CSM
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| OP2 | P | doub | 1.48Å | 1.50Å | |
| OP3 | P | sing | 1.61Å | 1.59Å | |
| P | OP1 | sing | 1.61Å | 1.52Å | |
| P | O5' | sing | 1.61Å | 1.58Å | |
| C6 | N1 | sing | 1.37Å | 1.34Å | |
| N1 | C2 | sing | 1.35Å | 1.33Å | |
| N1 | C1' | sing | 1.46Å | 1.48Å | |
| N3 | C2 | sing | 1.35Å | 1.35Å | |
| C2 | O2 | doub | 1.22Å | 1.36Å | |
| C4 | N3 | sing | 1.35Å | 1.34Å | |
| O4 | C4 | doub | 1.22Å | 1.34Å | |
| C5 | C4 | sing | 1.42Å | 1.40Å | |
| C5 | C6 | doub | 1.35Å | 1.39Å | |
| C5 | H5 | sing | 1.08Å | 1.08Å | |
| C6 | H6 | sing | 1.08Å | 1.08Å | |
| O4' | C1' | sing | 1.44Å | 1.45Å | |
| C1' | C2' | sing | 1.56Å | 1.52Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| C3' | C2' | sing | 1.57Å | 1.51Å | |
| C2' | O2A | sing | 1.46Å | 1.45Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| C6' | O2A | sing | 1.44Å | 1.45Å | |
| C4' | C3' | sing | 1.57Å | 1.53Å | |
| C3' | O3' | sing | 1.43Å | 1.44Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| O4' | C4' | sing | 1.46Å | 1.42Å | |
| C5' | C4' | sing | 1.53Å | 1.51Å | |
| C4' | C6' | sing | 1.56Å | 1.53Å | |
| O5' | C5' | sing | 1.43Å | 1.43Å | |
| C5' | H5' | sing | 1.09Å | 1.10Å | |
| C5' | H5'A | sing | 1.09Å | 1.10Å | |
| C6' | C7' | sing | 1.53Å | 1.53Å | |
| C6' | H6' | sing | 1.09Å | 1.10Å | |
| C7' | O8' | sing | 1.43Å | 1.43Å | |
| C7' | H7' | sing | 1.09Å | 1.10Å | |
| C7' | H7'A | sing | 1.09Å | 1.10Å | |
| C9' | O8' | sing | 1.43Å | 1.42Å | |
| C9' | H9' | sing | 1.09Å | 1.10Å | |
| C9' | H9'A | sing | 1.09Å | 1.10Å | |
| C9' | H9'B | sing | 1.09Å | 1.10Å | |
| OP1 | HOP1 | sing | 0.97Å | 0.95Å | |
| OP3 | HOP3 | sing | 0.97Å | 0.95Å | |
| N3 | HN3 | sing | 0.97Å | 1.00Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| OP2 | P | OP3 | 109.4° | 109.5° |
| OP2 | P | OP1 | 122.8° | 109.5° |
| OP2 | P | O5' | 106.4° | 109.5° |
| OP3 | P | OP1 | 100.8° | 109.4° |
| OP3 | P | O5' | 109.0° | 109.4° |
| P | OP3 | HOP3 | 109.5° | 113.9° |
| OP1 | P | O5' | 107.8° | 109.5° |
| P | OP1 | HOP1 | 109.5° | 114.0° |
| P | O5' | C5' | 118.5° | 123.0° |
| C6 | N1 | C2 | 121.4° | 120.6° |
| C6 | N1 | C1' | 121.0° | 119.7° |
| N1 | C6 | C5 | 119.5° | 119.8° |
| N1 | C6 | H6 | 120.3° | 120.2° |
| C2 | N1 | C1' | 117.5° | 119.7° |
| N1 | C2 | N3 | 121.3° | 121.0° |
| N1 | C2 | O2 | 118.8° | 119.5° |
| N1 | C1' | O4' | 110.3° | 110.3° |
| N1 | C1' | C2' | 115.0° | 110.2° |
| N1 | C1' | H1' | 108.9° | 110.2° |
| N3 | C2 | O2 | 119.9° | 119.5° |
| C2 | N3 | C4 | 119.2° | 120.3° |
| C2 | N3 | HN3 | 120.4° | 119.8° |
| N3 | C4 | O4 | 118.4° | 120.4° |
| N3 | C4 | C5 | 120.9° | 119.4° |
| C4 | N3 | HN3 | 120.4° | 119.9° |
| O4 | C4 | C5 | 120.7° | 120.3° |
| C4 | C5 | C6 | 117.6° | 119.0° |
| C4 | C5 | H5 | 121.2° | 120.5° |
| C6 | C5 | H5 | 121.2° | 120.5° |
| C5 | C6 | H6 | 120.3° | 120.1° |
| O4' | C1' | C2' | 104.6° | 105.3° |
| O4' | C1' | H1' | 109.3° | 110.4° |
| C1' | O4' | C4' | 103.9° | 106.9° |
| C2' | C1' | H1' | 108.4° | 110.3° |
| C1' | C2' | C3' | 99.0° | 99.1° |
| C1' | C2' | O2A | 105.3° | 103.8° |
| C1' | C2' | H2' | 115.4° | 116.4° |
| C3' | C2' | O2A | 102.9° | 101.2° |
| C3' | C2' | H2' | 115.5° | 117.4° |
| C2' | C3' | C4' | 91.5° | 93.2° |
| C2' | C3' | O3' | 110.8° | 112.6° |
| C2' | C3' | H3' | 113.8° | 112.5° |
| O2A | C2' | H2' | 116.6° | 116.3° |
| C2' | O2A | C6' | 107.3° | 106.9° |
| O2A | C6' | C4' | 100.9° | 105.3° |
| O2A | C6' | C7' | 113.9° | 110.3° |
| O2A | C6' | H6' | 110.3° | 110.3° |
| C4' | C3' | O3' | 109.9° | 112.6° |
| C4' | C3' | H3' | 113.5° | 112.6° |
| C3' | C4' | O4' | 102.4° | 101.2° |
| C3' | C4' | C5' | 114.4° | 116.7° |
| C3' | C4' | C6' | 105.1° | 99.0° |
| O3' | C3' | H3' | 115.0° | 112.1° |
| C3' | O3' | HO3' | 109.5° | 114.0° |
| O4' | C4' | C5' | 112.1° | 116.9° |
| O4' | C4' | C6' | 103.5° | 103.8° |
| C5' | C4' | C6' | 117.7° | 116.4° |
| C4' | C5' | O5' | 106.8° | 109.5° |
| C4' | C5' | H5' | 110.2° | 109.5° |
| C4' | C5' | H5'A | 110.1° | 109.5° |
| C4' | C6' | C7' | 113.2° | 110.3° |
| C4' | C6' | H6' | 109.2° | 110.3° |
| O5' | C5' | H5' | 110.1° | 109.4° |
| O5' | C5' | H5'A | 110.1° | 109.4° |
| H5' | C5' | H5'A | 109.5° | 109.4° |
| C7' | C6' | H6' | 109.1° | 110.4° |
| C6' | C7' | O8' | 108.7° | 109.5° |
| C6' | C7' | H7' | 109.6° | 109.5° |
| C6' | C7' | H7'A | 109.7° | 109.5° |
| O8' | C7' | H7' | 109.7° | 109.5° |
| O8' | C7' | H7'A | 109.6° | 109.5° |
| C7' | O8' | C9' | 113.4° | 114.0° |
| H7' | C7' | H7'A | 109.5° | 109.4° |
| O8' | C9' | H9' | 109.5° | 109.4° |
| O8' | C9' | H9'A | 109.4° | 109.5° |
| O8' | C9' | H9'B | 109.5° | 109.4° |
| H9' | C9' | H9'A | 109.5° | 109.5° |
| H9' | C9' | H9'B | 109.4° | 109.5° |
| H9'A | C9' | H9'B | 109.5° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| OP2 | P | OP3 | OP1 | 130.7° | 120.0° |
| OP2 | P | OP3 | O5' | 116.0° | 120.0° |
| OP2 | P | OP1 | O5' | 124.1° | 120.0° |
| OP2 | P | O5' | C5' | 175.4° | 55.0° |
| OP2 | P | OP1 | HOP1 | 0.0° | 180.0° |
| OP2 | P | OP3 | HOP3 | 0.0° | 60.0° |
| OP3 | P | OP1 | O5' | 114.2° | 119.9° |
| OP3 | P | O5' | C5' | 57.5° | 175.1° |
| OP3 | P | OP1 | HOP1 | 121.7° | 60.0° |
| OP1 | P | O5' | C5' | 51.2° | 65.0° |
| OP1 | P | OP3 | HOP3 | 130.7° | 60.1° |
| P | O5' | C5' | C4' | 150.4° | 180.0° |
| P | O5' | C5' | H5' | 30.8° | 59.9° |
| P | O5' | C5' | H5'A | 90.0° | 60.0° |
| O5' | P | OP1 | HOP1 | 124.1° | 60.0° |
| O5' | P | OP3 | HOP3 | 116.0° | 180.0° |
| C6 | N1 | C2 | C1' | 176.6° | 179.7° |
| C6 | N1 | C2 | N3 | 1.1° | 0.3° |
| C6 | N1 | C2 | O2 | 178.5° | 179.7° |
| N1 | C6 | C5 | C4 | 1.6° | 0.5° |
| N1 | C6 | C5 | H6 | 180.0° | 179.5° |
| N1 | C6 | C5 | H5 | 178.4° | 179.7° |
| C6 | N1 | C1' | O4' | 23.4° | 20.8° |
| C6 | N1 | C1' | C2' | 94.7° | 95.1° |
| C6 | N1 | C1' | H1' | 143.4° | 142.9° |
| N1 | C2 | N3 | O2 | 179.6° | 180.0° |
| N1 | C2 | N3 | C4 | 0.2° | 0.0° |
| C2 | N1 | C6 | C5 | 1.9° | 0.5° |
| C2 | N1 | C6 | H6 | 178.1° | 180.0° |
| C2 | N1 | C1' | O4' | 153.2° | 159.0° |
| C2 | N1 | C1' | C2' | 88.7° | 85.2° |
| C2 | N1 | C1' | H1' | 33.2° | 36.8° |
| N1 | C2 | N3 | HN3 | 179.8° | 180.0° |
| C1' | N1 | C2 | N3 | 175.5° | 180.0° |
| C1' | N1 | C2 | O2 | 4.9° | 0.0° |
| C1' | N1 | C6 | C5 | 174.6° | 179.7° |
| C1' | N1 | C6 | H6 | 5.4° | 0.3° |
| N1 | C1' | O4' | C2' | 124.3° | 118.9° |
| N1 | C1' | O4' | H1' | 119.8° | 122.1° |
| N1 | C1' | C2' | H1' | 122.2° | 121.9° |
| N1 | C1' | C2' | C3' | 84.7° | 86.9° |
| N1 | C1' | C2' | O2A | 169.1° | 169.2° |
| N1 | C1' | C2' | H2' | 39.1° | 40.0° |
| N1 | C1' | O4' | C4' | 124.9° | 122.2° |
| C2 | N3 | C4 | HN3 | 180.0° | 180.0° |
| C2 | N3 | C4 | O4 | 179.1° | 180.0° |
| C2 | N3 | C4 | C5 | 0.1° | 0.0° |
| O2 | C2 | N3 | C4 | 179.5° | 179.9° |
| O2 | C2 | N3 | HN3 | 0.5° | 0.0° |
| N3 | C4 | O4 | C5 | 179.1° | 180.0° |
| N3 | C4 | C5 | C6 | 0.7° | 0.3° |
| N3 | C4 | C5 | H5 | 179.4° | 180.0° |
| O4 | C4 | C5 | C6 | 178.4° | 179.7° |
| O4 | C4 | C5 | H5 | 1.6° | 0.0° |
| O4 | C4 | N3 | HN3 | 0.9° | 0.0° |
| C4 | C5 | C6 | H5 | 180.0° | 179.7° |
| C4 | C5 | C6 | H6 | 178.4° | 180.0° |
| C5 | C4 | N3 | HN3 | 179.9° | 180.0° |
| H5 | C5 | C6 | H6 | 1.6° | 0.2° |
| O4' | C1' | C2' | H1' | 116.6° | 119.1° |
| O4' | C1' | C2' | C3' | 36.5° | 32.1° |
| O4' | C1' | C2' | O2A | 69.6° | 71.9° |
| O4' | C1' | C2' | H2' | 160.4° | 159.0° |
| C1' | O4' | C4' | C3' | 37.3° | 37.8° |
| C1' | O4' | C4' | C5' | 160.3° | 165.7° |
| C1' | O4' | C4' | C6' | 71.8° | 64.6° |
| C1' | C2' | C3' | O2A | 108.0° | 106.2° |
| C1' | C2' | C3' | H2' | 123.8° | 126.2° |
| C1' | C2' | O2A | H2' | 129.3° | 129.2° |
| C1' | C2' | O2A | C6' | 63.1° | 64.6° |
| C1' | C2' | C3' | C4' | 54.8° | 51.0° |
| C1' | C2' | C3' | O3' | 166.8° | 167.1° |
| C1' | C2' | C3' | H3' | 61.8° | 65.1° |
| C2' | C1' | O4' | C4' | 0.6° | 3.3° |
| H1' | C1' | C2' | C3' | 153.1° | 151.2° |
| H1' | C1' | C2' | O2A | 47.0° | 47.2° |
| H1' | C1' | C2' | H2' | 83.0° | 81.9° |
| H1' | C1' | O4' | C4' | 115.4° | 115.7° |
| C3' | C2' | O2A | H2' | 127.5° | 128.4° |
| C3' | C2' | O2A | C6' | 40.1° | 37.8° |
| C2' | C3' | C4' | O3' | 112.8° | 116.1° |
| C2' | C3' | C4' | H3' | 116.8° | 116.0° |
| C2' | C3' | O3' | H3' | 130.8° | 128.1° |
| C2' | C3' | O3' | HO3' | 180.0° | 61.4° |
| C2' | C3' | C4' | O4' | 58.1° | 55.0° |
| C2' | C3' | C4' | C5' | 179.6° | 176.9° |
| C2' | C3' | C4' | C6' | 49.8° | 51.1° |
| O2A | C2' | C3' | C4' | 53.3° | 55.1° |
| O2A | C2' | C3' | O3' | 58.8° | 61.0° |
| O2A | C2' | C3' | H3' | 169.8° | 171.2° |
| C2' | O2A | C6' | C4' | 6.4° | 3.3° |
| C2' | O2A | C6' | C7' | 128.0° | 122.3° |
| C2' | O2A | C6' | H6' | 108.9° | 115.6° |
| H2' | C2' | O2A | C6' | 167.6° | 166.2° |
| H2' | C2' | C3' | C4' | 178.6° | 177.2° |
| H2' | C2' | C3' | O3' | 69.4° | 66.7° |
| H2' | C2' | C3' | H3' | 62.0° | 61.1° |
| O2A | C6' | C4' | C3' | 28.9° | 32.1° |
| O2A | C6' | C4' | O4' | 78.2° | 71.9° |
| O2A | C6' | C4' | C5' | 157.5° | 158.1° |
| O2A | C6' | C4' | C7' | 122.1° | 118.9° |
| O2A | C6' | C4' | H6' | 116.2° | 118.9° |
| O2A | C6' | C7' | H6' | 123.7° | 122.1° |
| O2A | C6' | C7' | O8' | 53.4° | 69.1° |
| O2A | C6' | C7' | H7' | 66.5° | 50.9° |
| O2A | C6' | C7' | H7'A | 173.2° | 170.9° |
| C4' | C3' | O3' | H3' | 129.5° | 128.2° |
| C4' | C3' | O3' | HO3' | 80.4° | 165.2° |
| C3' | C4' | O4' | C5' | 123.1° | 127.9° |
| C3' | C4' | O4' | C6' | 109.1° | 102.3° |
| C3' | C4' | C5' | C6' | 124.1° | 116.5° |
| C3' | C4' | C5' | O5' | 46.3° | 175.0° |
| C3' | C4' | C5' | H5' | 165.9° | 55.0° |
| C3' | C4' | C5' | H5'A | 73.3° | 65.0° |
| C3' | C4' | C6' | C7' | 93.2° | 86.8° |
| C3' | C4' | C6' | H6' | 145.0° | 151.1° |
| O3' | C3' | C4' | O4' | 170.8° | 171.1° |
| O3' | C3' | C4' | C5' | 67.6° | 60.8° |
| O3' | C3' | C4' | C6' | 63.0° | 65.0° |
| H3' | C3' | O3' | HO3' | 49.2° | 66.7° |
| H3' | C3' | C4' | O4' | 58.8° | 61.0° |
| H3' | C3' | C4' | C5' | 62.7° | 67.1° |
| H3' | C3' | C4' | C6' | 166.7° | 167.1° |
| O4' | C4' | C5' | C6' | 119.9° | 123.5° |
| O4' | C4' | C5' | O5' | 69.7° | 65.0° |
| O4' | C4' | C5' | H5' | 49.9° | 175.0° |
| O4' | C4' | C5' | H5'A | 170.8° | 55.0° |
| O4' | C4' | C6' | C7' | 159.7° | 169.2° |
| O4' | C4' | C6' | H6' | 38.0° | 47.1° |
| C4' | C5' | O5' | H5' | 119.6° | 120.1° |
| C4' | C5' | O5' | H5'A | 119.6° | 120.0° |
| C4' | C5' | H5' | H5'A | 121.3° | 120.1° |
| C5' | C4' | C6' | C7' | 35.4° | 39.1° |
| C5' | C4' | C6' | H6' | 86.3° | 83.0° |
| C6' | C4' | C5' | O5' | 170.4° | 58.5° |
| C6' | C4' | C5' | H5' | 70.0° | 61.5° |
| C6' | C4' | C5' | H5'A | 50.8° | 178.4° |
| C4' | C6' | C7' | H6' | 121.8° | 122.1° |
| C4' | C6' | C7' | O8' | 168.0° | 175.0° |
| C4' | C6' | C7' | H7' | 48.1° | 65.0° |
| C4' | C6' | C7' | H7'A | 72.2° | 55.0° |
| O5' | C5' | H5' | H5'A | 121.2° | 119.9° |
| C6' | C7' | O8' | H7' | 119.9° | 120.0° |
| C6' | C7' | O8' | H7'A | 119.9° | 120.0° |
| C6' | C7' | H7' | H7'A | 120.4° | 120.0° |
| C6' | C7' | O8' | C9' | 79.5° | 180.0° |
| H6' | C6' | C7' | O8' | 70.3° | 52.9° |
| H6' | C6' | C7' | H7' | 169.8° | 173.0° |
| H6' | C6' | C7' | H7'A | 49.6° | 67.0° |
| O8' | C7' | H7' | H7'A | 120.3° | 120.0° |
| C7' | O8' | C9' | H9' | 180.0° | 180.0° |
| C7' | O8' | C9' | H9'A | 60.0° | 60.0° |
| C7' | O8' | C9' | H9'B | 60.0° | 60.0° |
| H7' | C7' | O8' | C9' | 160.6° | 60.0° |
| H7'A | C7' | O8' | C9' | 40.3° | 60.0° |
| O8' | C9' | H9' | H9'A | 120.0° | 120.0° |
| O8' | C9' | H9' | H9'B | 120.0° | 120.0° |
| O8' | C9' | H9'A | H9'B | 120.0° | 120.0° |
| H9' | C9' | H9'A | H9'B | 120.0° | 120.1° |
