CSL
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| P | O2P | sing | 1.61Å | 1.49Å | |
| P | O1P | doub | 1.48Å | 1.49Å | |
| P | O5' | sing | 1.61Å | 1.55Å | |
| P | O3P | sing | 1.61Å | 70.03Å | |
| O2P | HOP2 | sing | 0.97Å | 0.95Å | |
| O5' | C5' | sing | 1.43Å | 1.34Å | |
| C5' | C4' | sing | 1.53Å | 1.48Å | |
| C5' | H5'1 | sing | 1.09Å | 1.10Å | |
| C5' | H5'2 | sing | 1.09Å | 1.10Å | |
| C4' | O4' | sing | 1.44Å | 1.44Å | |
| C4' | C3' | sing | 1.55Å | 1.49Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| O4' | C1' | sing | 1.44Å | 1.41Å | |
| C1' | N1 | sing | 1.47Å | 1.43Å | |
| C1' | C2' | sing | 1.54Å | 1.52Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| N1 | C2 | sing | 1.35Å | 1.40Å | |
| N1 | C6 | sing | 1.36Å | 1.35Å | |
| C2 | O2 | doub | 1.22Å | 1.24Å | |
| C2 | N3 | sing | 1.33Å | 1.34Å | |
| N3 | C4 | doub | 1.33Å | 1.32Å | |
| C4 | N4 | sing | 1.38Å | 1.32Å | |
| C4 | C5 | sing | 1.41Å | 1.42Å | |
| N4 | HN41 | sing | 0.97Å | 1.00Å | |
| N4 | HN42 | sing | 0.97Å | 1.00Å | |
| C5 | C6 | doub | 1.35Å | 1.31Å | |
| C5 | H5 | sing | 1.08Å | 1.08Å | |
| C6 | H6 | sing | 1.08Å | 1.08Å | |
| C2' | SE2' | sing | 1.96Å | 1.88Å | |
| C2' | C3' | sing | 1.55Å | 1.52Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| SE2' | CA' | sing | 1.96Å | 1.89Å | |
| CA' | HA'1 | sing | 1.09Å | 1.10Å | |
| CA' | HA'2 | sing | 1.09Å | 1.10Å | |
| CA' | HA'3 | sing | 1.09Å | 1.10Å | |
| C3' | O3' | sing | 1.43Å | 1.40Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| O3' | H3T | sing | 0.97Å | 0.95Å | |
| O3P | HOP3 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O2P | P | O1P | 121.3° | 109.5° |
| O2P | P | O5' | 108.8° | 109.4° |
| O2P | P | O3P | 101.4° | 109.4° |
| P | O2P | HOP2 | 109.5° | 114.0° |
| O1P | P | O5' | 106.9° | 109.5° |
| O1P | P | O3P | 86.3° | 109.5° |
| O5' | P | O3P | 31.6° | 109.5° |
| P | O5' | C5' | 118.8° | 123.0° |
| P | O3P | HOP3 | 101.4° | 114.0° |
| O5' | C5' | C4' | 106.2° | 109.4° |
| O5' | C5' | H5'1 | 110.6° | 109.5° |
| O5' | C5' | H5'2 | 111.3° | 109.5° |
| C4' | C5' | H5'1 | 110.5° | 109.4° |
| C4' | C5' | H5'2 | 111.3° | 109.5° |
| C5' | C4' | O4' | 109.7° | 110.6° |
| C5' | C4' | C3' | 112.5° | 110.6° |
| C5' | C4' | H4' | 105.6° | 110.6° |
| H5'1 | C5' | H5'2 | 107.0° | 109.5° |
| O4' | C4' | C3' | 103.8° | 103.5° |
| O4' | C4' | H4' | 114.1° | 110.6° |
| C4' | O4' | C1' | 108.7° | 107.0° |
| C3' | C4' | H4' | 111.3° | 110.7° |
| C4' | C3' | C2' | 100.2° | 102.1° |
| C4' | C3' | O3' | 109.7° | 110.9° |
| C4' | C3' | H3' | 117.8° | 110.9° |
| O4' | C1' | N1 | 108.8° | 109.9° |
| O4' | C1' | C2' | 106.9° | 107.3° |
| O4' | C1' | H1' | 112.4° | 109.9° |
| N1 | C1' | C2' | 112.0° | 109.9° |
| N1 | C1' | H1' | 107.5° | 109.8° |
| C1' | N1 | C2 | 119.8° | 119.9° |
| C1' | N1 | C6 | 118.4° | 119.8° |
| C2' | C1' | H1' | 109.3° | 110.1° |
| C1' | C2' | SE2' | 109.5° | 110.5° |
| C1' | C2' | C3' | 100.9° | 104.2° |
| C1' | C2' | H2' | 117.3° | 110.5° |
| C2 | N1 | C6 | 121.8° | 120.3° |
| N1 | C2 | O2 | 120.6° | 119.4° |
| N1 | C2 | N3 | 118.2° | 121.1° |
| N1 | C6 | C5 | 119.9° | 119.3° |
| N1 | C6 | H6 | 120.1° | 120.3° |
| O2 | C2 | N3 | 121.3° | 119.5° |
| C2 | N3 | C4 | 119.7° | 120.7° |
| N3 | C4 | N4 | 117.7° | 120.2° |
| N3 | C4 | C5 | 122.6° | 119.6° |
| N4 | C4 | C5 | 119.7° | 120.2° |
| C4 | N4 | HN41 | 110.5° | 120.0° |
| C4 | N4 | HN42 | 124.7° | 120.0° |
| C4 | C5 | C6 | 117.9° | 119.0° |
| C4 | C5 | H5 | 121.0° | 120.5° |
| HN41 | N4 | HN42 | 124.8° | 120.0° |
| C6 | C5 | H5 | 121.1° | 120.5° |
| C5 | C6 | H6 | 120.0° | 120.3° |
| SE2' | C2' | C3' | 115.8° | 110.5° |
| SE2' | C2' | H2' | 102.8° | 110.4° |
| C2' | SE2' | CA' | 113.4° | 101.0° |
| C3' | C2' | H2' | 111.1° | 110.6° |
| C2' | C3' | O3' | 116.3° | 110.9° |
| C2' | C3' | H3' | 111.4° | 110.9° |
| SE2' | CA' | HA'1 | 109.5° | 109.5° |
| SE2' | CA' | HA'2 | 109.5° | 109.5° |
| SE2' | CA' | HA'3 | 109.5° | 109.5° |
| HA'1 | CA' | HA'2 | 109.5° | 109.5° |
| HA'1 | CA' | HA'3 | 109.4° | 109.5° |
| HA'2 | CA' | HA'3 | 109.5° | 109.4° |
| O3' | C3' | H3' | 102.2° | 110.9° |
| C3' | O3' | H3T | 109.5° | 114.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O2P | P | O1P | O5' | 125.3° | 120.0° |
| O2P | P | O1P | O3P | 101.1° | 120.0° |
| O2P | P | O5' | O3P | 81.1° | 119.9° |
| O2P | P | O5' | C5' | 32.8° | 175.0° |
| O2P | P | O3P | HOP3 | 180.0° | 60.0° |
| O1P | P | O5' | O3P | 51.5° | 120.0° |
| O1P | P | O2P | HOP2 | 75.6° | 60.0° |
| O1P | P | O5' | C5' | 165.4° | 55.0° |
| O1P | P | O3P | HOP3 | 58.8° | 180.0° |
| O5' | P | O2P | HOP2 | 48.9° | 180.0° |
| P | O5' | C5' | C4' | 174.5° | 180.0° |
| P | O5' | C5' | H5'1 | 54.5° | 60.1° |
| P | O5' | C5' | H5'2 | 64.3° | 60.0° |
| O5' | P | O3P | HOP3 | 72.6° | 60.0° |
| O3P | P | O2P | HOP2 | 17.0° | 60.0° |
| O3P | P | O5' | C5' | 114.0° | 65.1° |
| O5' | C5' | C4' | H5'1 | 120.0° | 120.0° |
| O5' | C5' | C4' | H5'2 | 121.3° | 120.0° |
| O5' | C5' | H5'1 | H5'2 | 121.3° | 120.1° |
| O5' | C5' | C4' | O4' | 58.3° | 66.5° |
| O5' | C5' | C4' | C3' | 56.7° | 179.5° |
| O5' | C5' | C4' | H4' | 178.3° | 56.5° |
| C4' | C5' | H5'1 | H5'2 | 121.3° | 120.0° |
| C5' | C4' | O4' | C3' | 120.4° | 118.4° |
| C5' | C4' | O4' | H4' | 118.2° | 122.9° |
| C5' | C4' | C3' | H4' | 118.3° | 123.0° |
| C5' | C4' | O4' | C1' | 147.8° | 158.6° |
| C5' | C4' | C3' | C2' | 160.7° | 155.5° |
| C5' | C4' | C3' | O3' | 76.5° | 86.3° |
| C5' | C4' | C3' | H3' | 39.7° | 37.3° |
| H5'1 | C5' | C4' | O4' | 178.3° | 53.5° |
| H5'1 | C5' | C4' | C3' | 63.3° | 60.5° |
| H5'1 | C5' | C4' | H4' | 58.3° | 176.4° |
| H5'2 | C5' | C4' | O4' | 63.0° | 173.5° |
| H5'2 | C5' | C4' | C3' | 178.0° | 59.5° |
| H5'2 | C5' | C4' | H4' | 60.4° | 63.6° |
| O4' | C4' | C3' | H4' | 123.2° | 118.6° |
| C4' | O4' | C1' | N1 | 121.7° | 146.0° |
| C4' | O4' | C1' | C2' | 0.6° | 26.6° |
| C4' | O4' | C1' | H1' | 119.4° | 93.1° |
| O4' | C4' | C3' | C2' | 42.2° | 37.0° |
| O4' | C4' | C3' | O3' | 165.0° | 155.2° |
| O4' | C4' | C3' | H3' | 78.7° | 81.1° |
| C3' | C4' | O4' | C1' | 27.3° | 40.1° |
| C4' | C3' | C2' | C1' | 40.5° | 20.9° |
| C4' | C3' | C2' | SE2' | 77.6° | 97.8° |
| C4' | C3' | C2' | O3' | 118.1° | 118.2° |
| C4' | C3' | C2' | H3' | 125.4° | 118.2° |
| C4' | C3' | C2' | H2' | 165.6° | 139.6° |
| C4' | C3' | O3' | H3' | 125.8° | 123.7° |
| C4' | C3' | O3' | H3T | 144.8° | 61.5° |
| H4' | C4' | O4' | C1' | 94.0° | 78.5° |
| H4' | C4' | C3' | C2' | 81.0° | 81.5° |
| H4' | C4' | C3' | O3' | 41.8° | 36.7° |
| H4' | C4' | C3' | H3' | 158.1° | 160.3° |
| O4' | C1' | N1 | C2' | 117.9° | 117.8° |
| O4' | C1' | N1 | H1' | 122.0° | 121.0° |
| O4' | C1' | C2' | H1' | 122.0° | 119.6° |
| O4' | C1' | N1 | C2 | 160.1° | 53.5° |
| O4' | C1' | N1 | C6 | 21.6° | 126.7° |
| O4' | C1' | C2' | SE2' | 97.0° | 120.7° |
| O4' | C1' | C2' | C3' | 25.6° | 2.1° |
| O4' | C1' | C2' | H2' | 146.4° | 116.8° |
| N1 | C1' | C2' | H1' | 119.0° | 121.1° |
| C1' | N1 | C2 | C6 | 178.3° | 179.7° |
| C1' | N1 | C2 | O2 | 1.2° | 0.0° |
| C1' | N1 | C2 | N3 | 179.8° | 180.0° |
| C1' | N1 | C6 | C5 | 179.9° | 179.8° |
| C1' | N1 | C6 | H6 | 0.1° | 0.0° |
| N1 | C1' | C2' | SE2' | 143.9° | 119.9° |
| N1 | C1' | C2' | C3' | 93.4° | 121.5° |
| N1 | C1' | C2' | H2' | 27.4° | 2.6° |
| C2' | C1' | N1 | C2 | 82.0° | 64.2° |
| C2' | C1' | N1 | C6 | 96.3° | 115.5° |
| C1' | C2' | SE2' | C3' | 113.3° | 114.8° |
| C1' | C2' | SE2' | H2' | 125.4° | 122.6° |
| C1' | C2' | C3' | H2' | 125.1° | 118.8° |
| C1' | C2' | SE2' | CA' | 45.9° | 180.0° |
| C1' | C2' | C3' | O3' | 158.6° | 139.0° |
| C1' | C2' | C3' | H3' | 84.9° | 97.3° |
| H1' | C1' | N1 | C2 | 38.1° | 174.6° |
| H1' | C1' | N1 | C6 | 143.6° | 5.7° |
| H1' | C1' | C2' | SE2' | 24.9° | 1.2° |
| H1' | C1' | C2' | C3' | 147.6° | 117.5° |
| H1' | C1' | C2' | H2' | 91.6° | 123.7° |
| N1 | C2 | O2 | N3 | 178.6° | 180.0° |
| N1 | C2 | N3 | C4 | 1.7° | 0.0° |
| C2 | N1 | C6 | C5 | 1.6° | 0.5° |
| C2 | N1 | C6 | H6 | 178.4° | 179.7° |
| C6 | N1 | C2 | O2 | 179.5° | 179.7° |
| C6 | N1 | C2 | N3 | 1.9° | 0.3° |
| N1 | C6 | C5 | C4 | 1.0° | 0.5° |
| N1 | C6 | C5 | H6 | 180.0° | 179.8° |
| N1 | C6 | C5 | H5 | 179.0° | 179.7° |
| O2 | C2 | N3 | C4 | 179.7° | 180.0° |
| C2 | N3 | C4 | N4 | 179.8° | 180.0° |
| C2 | N3 | C4 | C5 | 1.2° | 0.0° |
| N3 | C4 | N4 | C5 | 179.0° | 180.0° |
| N3 | C4 | N4 | HN41 | 180.0° | 0.0° |
| N3 | C4 | N4 | HN42 | 0.0° | 180.0° |
| N3 | C4 | C5 | C6 | 0.8° | 0.3° |
| N3 | C4 | C5 | H5 | 179.2° | 180.0° |
| C4 | N4 | HN41 | HN42 | 180.0° | 180.0° |
| N4 | C4 | C5 | C6 | 179.8° | 179.7° |
| N4 | C4 | C5 | H5 | 0.2° | 0.0° |
| C5 | C4 | N4 | HN41 | 1.0° | 180.0° |
| C5 | C4 | N4 | HN42 | 179.0° | 0.0° |
| C4 | C5 | C6 | H5 | 180.0° | 179.8° |
| C4 | C5 | C6 | H6 | 179.0° | 179.7° |
| H5 | C5 | C6 | H6 | 1.0° | 0.1° |
| SE2' | C2' | C3' | H2' | 116.8° | 122.6° |
| C2' | SE2' | CA' | HA'1 | 134.9° | 60.0° |
| C2' | SE2' | CA' | HA'2 | 14.8° | 180.0° |
| C2' | SE2' | CA' | HA'3 | 105.2° | 60.0° |
| SE2' | C2' | C3' | O3' | 40.5° | 20.4° |
| SE2' | C2' | C3' | H3' | 157.0° | 144.0° |
| C3' | C2' | SE2' | CA' | 67.3° | 65.2° |
| C2' | C3' | O3' | H3' | 121.5° | 123.7° |
| C2' | C3' | O3' | H3T | 32.1° | 174.1° |
| H2' | C2' | SE2' | CA' | 171.3° | 57.5° |
| H2' | C2' | C3' | O3' | 76.3° | 102.2° |
| H2' | C2' | C3' | H3' | 40.2° | 21.5° |
| SE2' | CA' | HA'1 | HA'2 | 120.0° | 120.0° |
| SE2' | CA' | HA'1 | HA'3 | 120.0° | 120.0° |
| SE2' | CA' | HA'2 | HA'3 | 120.0° | 120.0° |
| HA'1 | CA' | HA'2 | HA'3 | 120.0° | 120.0° |
| H3' | C3' | O3' | H3T | 89.5° | 62.2° |
