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Summary Geometry Related PDB entries

Obsolete: CRY

CRY was replaced with GOL on

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O1	C1	sing	1.43Å	1.42Å
O1	HO1	sing	0.97Å	0.95Å
O2	C2	sing	1.43Å	1.52Å
O2	HO2	sing	0.97Å	0.95Å
O3	C3	sing	1.43Å	1.49Å
O3	HO3	sing	0.97Å	0.95Å
C1	C2	sing	1.53Å	1.51Å
C1	H11	sing	1.09Å	1.11Å
C1	H12	sing	1.09Å	1.11Å
C2	C3	sing	1.53Å	1.60Å
C2	H21	sing	1.09Å	1.12Å
C3	H31	sing	1.09Å	1.11Å
C3	H32	sing	1.09Å	1.12Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C1	O1	HO1	103.7°	106.9°
O1	C1	C2	103.7°	109.6°
O1	C1	H11	114.4°	109.4°
O1	C1	H12	114.4°	109.5°
C2	O2	HO2	106.8°	106.8°
O2	C2	C1	106.8°	109.4°
O2	C2	C3	109.9°	109.4°
O2	C2	H21	111.0°	109.4°
C3	O3	HO3	103.9°	106.9°
O3	C3	C2	103.9°	109.6°
O3	C3	H31	114.3°	109.4°
O3	C3	H32	114.3°	109.5°
C2	C1	H11	114.3°	109.5°
C2	C1	H12	114.4°	109.5°
C1	C2	C3	109.7°	109.6°
C1	C2	H21	111.2°	109.5°
H11	C1	H12	96.1°	109.4°
C3	C2	H21	108.2°	109.5°
C2	C3	H31	114.3°	109.5°
C2	C3	H32	114.3°	109.5°
H31	C3	H32	96.2°	109.4°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O1	C1	C2	O2	54.8°	59.9°
O1	C1	C2	H11	125.2°	120.0°
O1	C1	C2	H12	125.3°	120.1°
O1	C1	H11	H12	120.3°	120.0°
O1	C1	C2	C3	173.9°	180.0°
O1	C1	C2	H21	66.5°	60.0°
HO1	O1	C1	C2	180.0°	179.9°
HO1	O1	C1	H11	54.8°	60.1°
HO1	O1	C1	H12	54.7°	59.9°
O2	C2	C3	O3	0.2°	59.9°
O2	C2	C1	C3	119.1°	120.0°
O2	C2	C1	H21	121.2°	119.9°
O2	C2	C1	H11	180.0°	60.1°
O2	C2	C1	H12	70.5°	180.0°
O2	C2	C3	H21	121.3°	119.9°
O2	C2	C3	H31	125.5°	60.1°
O2	C2	C3	H32	125.0°	180.0°
HO2	O2	C2	C1	180.0°	60.0°
HO2	O2	C2	C3	61.0°	60.0°
HO2	O2	C2	H21	58.6°	180.0°
O3	C3	C2	C1	117.0°	180.0°
O3	C3	C2	H31	125.3°	120.0°
O3	C3	C2	H32	125.2°	120.1°
O3	C3	C2	H21	121.5°	60.0°
O3	C3	H31	H32	120.2°	120.0°
HO3	O3	C3	C2	180.0°	179.9°
HO3	O3	C3	H31	54.8°	60.1°
HO3	O3	C3	H32	54.7°	59.9°
C2	C1	H11	H12	120.3°	119.9°
C1	C2	C3	H21	121.5°	120.0°
C1	C2	C3	H31	8.3°	60.0°
C1	C2	C3	H32	117.8°	60.0°
H11	C1	C2	C3	60.9°	60.0°
H11	C1	C2	H21	58.8°	180.0°
H12	C1	C2	C3	48.6°	60.0°
H12	C1	C2	H21	168.3°	60.1°
C2	C3	H31	H32	120.2°	119.9°
H21	C2	C3	H31	113.2°	180.0°
H21	C2	C3	H32	3.7°	60.1°

226262

PDB entries from 2024-10-16

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