Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
N | CA1 | sing | 1.47Å | 1.47Å | |
N | HN1 | sing | 1.01Å | 1.00Å | |
N | HN2 | sing | 1.01Å | 1.00Å | |
CA1 | C1 | sing | 1.51Å | 1.51Å | |
CA1 | HA11 | sing | 1.09Å | 1.10Å | |
CA1 | HA12 | sing | 1.09Å | 1.10Å | |
C1 | N2 | doub | 1.30Å | 1.35Å | |
C1 | N3 | sing | 1.37Å | 1.34Å | |
N2 | CA2 | sing | 1.37Å | 1.36Å | |
N3 | C2 | sing | 1.35Å | 1.35Å | |
N3 | CA3 | sing | 1.46Å | 1.38Å | |
C2 | O2 | doub | 1.22Å | 1.29Å | |
C2 | CA2 | sing | 1.47Å | 1.39Å | |
CA2 | CB2 | doub | 1.38Å | 1.43Å | |
CA3 | C | sing | 1.51Å | 1.51Å | |
CA3 | HA31 | sing | 1.09Å | 1.10Å | |
CA3 | HA32 | sing | 1.09Å | 1.10Å | |
CB2 | CG2 | sing | 1.46Å | 1.40Å | |
CB2 | HB2 | sing | 1.08Å | 1.08Å | |
CG2 | CD1 | doub | 1.40Å | 1.40Å | Aromatic |
CG2 | CD2 | sing | 1.40Å | 1.40Å | Aromatic |
CD1 | CE1 | sing | 1.37Å | 1.40Å | Aromatic |
CD1 | HD1 | sing | 1.08Å | 1.08Å | |
CD2 | CE2 | doub | 1.37Å | 1.40Å | Aromatic |
CD2 | HD2 | sing | 1.08Å | 1.08Å | |
CE1 | CZ | doub | 1.39Å | 1.40Å | Aromatic |
CE1 | HE1 | sing | 1.08Å | 1.08Å | |
CE2 | CZ | sing | 1.39Å | 1.40Å | Aromatic |
CE2 | HE2 | sing | 1.08Å | 1.08Å | |
CZ | OH | sing | 1.36Å | 1.37Å | |
OH | HOH | sing | 0.97Å | 0.95Å | |
C | O | doub | 1.21Å | 1.23Å | |
C | OXT | sing | 1.34Å | 1.33Å | |
OXT | HXT | sing | 0.97Å | 0.95Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
CA1 | N | HN1 | 109.4° | 106.7° |
CA1 | N | HN2 | 109.5° | 106.7° |
N | CA1 | C1 | 101.5° | 109.5° |
N | CA1 | HA11 | 113.9° | 109.5° |
N | CA1 | HA12 | 112.2° | 109.4° |
HN1 | N | HN2 | 109.5° | 106.7° |
C1 | CA1 | HA11 | 113.9° | 109.5° |
C1 | CA1 | HA12 | 112.2° | 109.5° |
CA1 | C1 | N2 | 122.4° | 124.3° |
CA1 | C1 | N3 | 123.7° | 124.3° |
HA11 | CA1 | HA12 | 103.5° | 109.4° |
N2 | C1 | N3 | 113.8° | 111.4° |
C1 | N2 | CA2 | 101.3° | 109.3° |
C1 | N3 | C2 | 107.5° | 108.4° |
C1 | N3 | CA3 | 129.4° | 125.8° |
N2 | CA2 | C2 | 113.2° | 105.7° |
N2 | CA2 | CB2 | 125.0° | 127.2° |
C2 | N3 | CA3 | 123.2° | 125.8° |
N3 | C2 | O2 | 119.6° | 127.4° |
N3 | C2 | CA2 | 104.2° | 105.2° |
N3 | CA3 | C | 125.5° | 109.5° |
N3 | CA3 | HA31 | 100.6° | 109.5° |
N3 | CA3 | HA32 | 104.4° | 109.5° |
O2 | C2 | CA2 | 136.0° | 127.4° |
C2 | CA2 | CB2 | 121.7° | 127.1° |
CA2 | CB2 | CG2 | 130.7° | 120.0° |
CA2 | CB2 | HB2 | 114.7° | 120.0° |
C | CA3 | HA31 | 100.7° | 109.5° |
C | CA3 | HA32 | 104.4° | 109.5° |
CA3 | C | O | 113.1° | 120.0° |
CA3 | C | OXT | 120.9° | 120.0° |
HA31 | CA3 | HA32 | 123.2° | 109.5° |
CG2 | CB2 | HB2 | 114.6° | 120.0° |
CB2 | CG2 | CD1 | 123.3° | 120.1° |
CB2 | CG2 | CD2 | 111.5° | 120.1° |
CD1 | CG2 | CD2 | 125.2° | 119.7° |
CG2 | CD1 | CE1 | 121.6° | 119.9° |
CG2 | CD1 | HD1 | 119.2° | 120.1° |
CG2 | CD2 | CE2 | 112.8° | 119.8° |
CG2 | CD2 | HD2 | 123.6° | 120.0° |
CE1 | CD1 | HD1 | 119.2° | 120.1° |
CD1 | CE1 | CZ | 113.9° | 120.1° |
CD1 | CE1 | HE1 | 123.1° | 119.9° |
CE2 | CD2 | HD2 | 123.6° | 120.1° |
CD2 | CE2 | CZ | 122.5° | 120.2° |
CD2 | CE2 | HE2 | 118.7° | 119.9° |
CZ | CE1 | HE1 | 123.1° | 119.9° |
CE1 | CZ | CE2 | 124.0° | 120.3° |
CE1 | CZ | OH | 122.0° | 119.9° |
CZ | CE2 | HE2 | 118.7° | 119.9° |
CE2 | CZ | OH | 114.0° | 119.9° |
CZ | OH | HOH | 109.5° | 106.8° |
O | C | OXT | 125.8° | 120.0° |
C | OXT | HXT | 109.5° | 120.0° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
CA1 | N | HN1 | HN2 | 120.0° | 113.8° |
N | CA1 | C1 | HA11 | 122.8° | 120.0° |
N | CA1 | C1 | HA12 | 120.0° | 120.0° |
N | CA1 | HA11 | HA12 | 122.1° | 119.9° |
N | CA1 | C1 | N2 | 89.3° | 0.1° |
N | CA1 | C1 | N3 | 86.7° | 179.7° |
HN1 | N | CA1 | C1 | 105.4° | 180.0° |
HN1 | N | CA1 | HA11 | 131.8° | 60.0° |
HN1 | N | CA1 | HA12 | 14.6° | 60.0° |
HN2 | N | CA1 | C1 | 134.6° | 66.2° |
HN2 | N | CA1 | HA11 | 11.8° | 53.8° |
HN2 | N | CA1 | HA12 | 105.4° | 173.8° |
C1 | CA1 | HA11 | HA12 | 122.1° | 120.0° |
CA1 | C1 | N2 | N3 | 176.3° | 179.7° |
CA1 | C1 | N2 | CA2 | 177.7° | 180.0° |
CA1 | C1 | N3 | C2 | 179.0° | 179.9° |
CA1 | C1 | N3 | CA3 | 2.2° | 0.2° |
HA11 | CA1 | C1 | N2 | 33.6° | 120.0° |
HA11 | CA1 | C1 | N3 | 150.4° | 59.7° |
HA12 | CA1 | C1 | N2 | 150.7° | 120.0° |
HA12 | CA1 | C1 | N3 | 33.3° | 60.3° |
N2 | C1 | N3 | C2 | 2.7° | 0.4° |
N2 | C1 | N3 | CA3 | 178.5° | 179.9° |
C1 | N2 | CA2 | C2 | 0.6° | 0.0° |
C1 | N2 | CA2 | CB2 | 179.5° | 180.0° |
N3 | C1 | N2 | CA2 | 1.3° | 0.2° |
C1 | N3 | C2 | CA3 | 178.8° | 179.7° |
C1 | N3 | C2 | O2 | 178.8° | 179.9° |
C1 | N3 | C2 | CA2 | 2.8° | 0.3° |
C1 | N3 | CA3 | C | 91.1° | 90.4° |
C1 | N3 | CA3 | HA31 | 20.4° | 29.6° |
C1 | N3 | CA3 | HA32 | 149.0° | 149.6° |
N2 | CA2 | C2 | N3 | 2.1° | 0.2° |
N2 | CA2 | C2 | O2 | 177.2° | 180.0° |
N2 | CA2 | C2 | CB2 | 179.0° | 179.9° |
N2 | CA2 | CB2 | CG2 | 0.1° | 5.3° |
N2 | CA2 | CB2 | HB2 | 179.9° | 174.8° |
N3 | C2 | O2 | CA2 | 174.4° | 179.8° |
N3 | C2 | CA2 | CB2 | 178.9° | 179.7° |
C2 | N3 | CA3 | C | 87.5° | 89.9° |
C2 | N3 | CA3 | HA31 | 161.1° | 150.1° |
C2 | N3 | CA3 | HA32 | 32.5° | 30.1° |
CA3 | N3 | C2 | O2 | 2.4° | 0.1° |
CA3 | N3 | C2 | CA2 | 178.4° | 180.0° |
N3 | CA3 | C | HA31 | 111.4° | 120.0° |
N3 | CA3 | C | HA32 | 120.0° | 120.0° |
N3 | CA3 | HA31 | HA32 | 115.2° | 120.0° |
N3 | CA3 | C | O | 156.5° | 0.0° |
N3 | CA3 | C | OXT | 18.6° | 180.0° |
O2 | C2 | CA2 | CB2 | 3.9° | 0.1° |
C2 | CA2 | CB2 | CG2 | 178.7° | 174.8° |
C2 | CA2 | CB2 | HB2 | 1.3° | 5.1° |
CA2 | CB2 | CG2 | HB2 | 180.0° | 180.0° |
CA2 | CB2 | CG2 | CD1 | 0.6° | 6.0° |
CA2 | CB2 | CG2 | CD2 | 179.9° | 174.2° |
C | CA3 | HA31 | HA32 | 115.2° | 120.0° |
CA3 | C | O | OXT | 174.8° | 179.9° |
CA3 | C | OXT | HXT | 174.5° | 180.0° |
HA31 | CA3 | C | O | 92.0° | 120.0° |
HA31 | CA3 | C | OXT | 92.9° | 60.0° |
HA32 | CA3 | C | O | 36.5° | 120.0° |
HA32 | CA3 | C | OXT | 138.6° | 60.0° |
CB2 | CG2 | CD1 | CD2 | 179.2° | 179.8° |
CB2 | CG2 | CD1 | CE1 | 179.7° | 180.0° |
CB2 | CG2 | CD1 | HD1 | 0.4° | 0.0° |
CB2 | CG2 | CD2 | CE2 | 180.0° | 179.8° |
CB2 | CG2 | CD2 | HD2 | 0.0° | 0.2° |
HB2 | CB2 | CG2 | CD1 | 179.4° | 174.0° |
HB2 | CB2 | CG2 | CD2 | 0.1° | 5.7° |
CG2 | CD1 | CE1 | HD1 | 180.0° | 180.0° |
CD1 | CG2 | CD2 | CE2 | 0.8° | 0.5° |
CD1 | CG2 | CD2 | HD2 | 179.2° | 180.0° |
CG2 | CD1 | CE1 | CZ | 0.5° | 0.0° |
CG2 | CD1 | CE1 | HE1 | 179.5° | 180.0° |
CD2 | CG2 | CD1 | CE1 | 0.5° | 0.2° |
CD2 | CG2 | CD1 | HD1 | 179.5° | 179.8° |
CG2 | CD2 | CE2 | HD2 | 180.0° | 179.5° |
CG2 | CD2 | CE2 | CZ | 1.1° | 0.5° |
CG2 | CD2 | CE2 | HE2 | 178.9° | 179.8° |
CD1 | CE1 | CZ | HE1 | 180.0° | 179.9° |
CD1 | CE1 | CZ | CE2 | 0.9° | 0.0° |
CD1 | CE1 | CZ | OH | 179.9° | 180.0° |
HD1 | CD1 | CE1 | CZ | 179.6° | 180.0° |
HD1 | CD1 | CE1 | HE1 | 0.5° | 0.0° |
CD2 | CE2 | CZ | CE1 | 1.3° | 0.3° |
CD2 | CE2 | CZ | HE2 | 180.0° | 179.7° |
CD2 | CE2 | CZ | OH | 179.4° | 179.8° |
HD2 | CD2 | CE2 | CZ | 178.9° | 180.0° |
HD2 | CD2 | CE2 | HE2 | 1.1° | 0.2° |
CE1 | CZ | CE2 | OH | 179.3° | 179.9° |
CE1 | CZ | CE2 | HE2 | 178.7° | 180.0° |
CE1 | CZ | OH | HOH | 6.2° | 90.1° |
HE1 | CE1 | CZ | CE2 | 179.1° | 180.0° |
HE1 | CE1 | CZ | OH | 0.1° | 0.1° |
CE2 | CZ | OH | HOH | 174.5° | 90.0° |
HE2 | CE2 | CZ | OH | 0.6° | 0.0° |
O | C | OXT | HXT | 0.0° | 0.1° |