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Summary Geometry Related PDB entries

CP

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
N	C	sing	1.35Å	1.34Å
N	HN1	sing	0.97Å	1.02Å
N	HN2	sing	0.97Å	1.02Å
C	O	doub	1.21Å	1.23Å
C	O4P	sing	1.35Å	1.44Å
O4P	P	sing	1.61Å	1.61Å
P	O1P	doub	1.48Å	1.57Å
P	O2P	sing	1.61Å	1.60Å
P	O3P	sing	1.61Å	1.60Å
O2P	HOP2	sing	0.97Å	0.95Å
O3P	HOP3	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C	N	HN1	118.9°	120.0°
C	N	HN2	115.8°	120.0°
N	C	O	115.9°	120.0°
N	C	O4P	119.0°	120.0°
HN1	N	HN2	125.2°	120.0°
O	C	O4P	125.1°	120.0°
C	O4P	P	120.9°	120.0°
O4P	P	O1P	104.4°	109.5°
O4P	P	O2P	110.1°	109.5°
O4P	P	O3P	109.3°	109.5°
O1P	P	O2P	112.4°	109.4°
O1P	P	O3P	110.6°	109.5°
O2P	P	O3P	109.9°	109.5°
P	O2P	HOP2	110.0°	106.8°
P	O3P	HOP3	109.3°	106.8°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C	N	HN1	HN2	179.4°	179.7°
N	C	O	O4P	179.5°	180.0°
N	C	O4P	P	171.7°	180.0°
HN1	N	C	O	0.5°	179.7°
HN1	N	C	O4P	180.0°	0.3°
HN2	N	C	O	180.0°	0.0°
HN2	N	C	O4P	0.5°	180.0°
O	C	O4P	P	8.8°	0.0°
C	O4P	P	O1P	168.2°	60.1°
C	O4P	P	O2P	47.3°	180.0°
C	O4P	P	O3P	73.4°	60.0°
O4P	P	O1P	O2P	119.4°	120.0°
O4P	P	O1P	O3P	117.4°	120.0°
O4P	P	O2P	O3P	120.4°	120.1°
O4P	P	O2P	HOP2	180.0°	180.0°
O4P	P	O3P	HOP3	180.0°	60.0°
O1P	P	O2P	O3P	123.6°	120.0°
O1P	P	O2P	HOP2	64.0°	60.0°
O1P	P	O3P	HOP3	65.6°	180.0°
O2P	P	O3P	HOP3	59.1°	60.0°
O3P	P	O2P	HOP2	59.6°	60.0°

218500

PDB entries from 2024-04-17

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