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COD

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
N1C2sing1.32Å1.40ÅAromatic
N1C6doub1.33Å1.38ÅAromatic
C2N3doub1.32Å1.38ÅAromatic
C2HC2sing1.08Å1.10Å
N3C4sing1.33Å1.40ÅAromatic
C4C5doub1.41Å1.40ÅAromatic
C4N10sing1.37Å1.29ÅAromatic
C5C6sing1.41Å1.48ÅAromatic
C5N8sing1.35Å1.28ÅAromatic
C6N7sing1.38Å1.33Å
N7HN71sing0.97Å1.02Å
N7HN72sing0.97Å1.02Å
N8C9doub1.30Å1.42ÅAromatic
C9N10sing1.36Å1.43ÅAromatic
C9HC9sing1.08Å1.10Å
N10C11sing1.46Å1.46Å
C11C12sing1.55Å1.56Å
C11O17sing1.44Å1.43Å
C11HC11sing1.09Å1.11Å
C12O13sing1.43Å1.44Å
C12C14sing1.55Å1.53Å
C12HC12sing1.09Å1.12Å
O13HO13sing0.97Å0.95Å
C14O15sing1.43Å1.44Å
C14C16sing1.54Å1.51Å
C14HC14sing1.09Å1.12Å
O15HO15sing0.97Å0.95Å
C16O17sing1.44Å1.45Å
C16C18sing1.53Å1.52Å
C16HC16sing1.09Å1.11Å
C18O19sing1.43Å1.45Å
C18H181sing1.09Å1.12Å
C18H182sing1.09Å1.12Å
O19P20sing1.61Å1.62Å
P20O21sing1.61Å1.55Å
P20O22doub1.48Å1.56Å
P20O23sing1.61Å1.58Å
O21HO21sing0.97Å0.95Å
O23P24sing1.61Å1.56Å
P24O25sing1.61Å1.54Å
P24O26doub1.48Å1.55Å
P24O27sing1.61Å1.58Å
O25HO25sing0.97Å0.95Å
O27C28sing1.43Å1.40Å
C28C29sing1.53Å1.56Å
C28H281sing1.09Å1.11Å
C28H282sing1.09Å1.12Å
C29C30sing1.53Å1.57Å
C29C31sing1.53Å1.59Å
C29C32sing1.53Å1.58Å
C30H301sing1.09Å1.12Å
C30H302sing1.09Å1.12Å
C30H303sing1.09Å1.11Å
C31H311sing1.09Å1.12Å
C31H312sing1.09Å1.11Å
C31H313sing1.09Å1.11Å
C32O33sing1.43Å1.44Å
C32C34sing1.51Å1.58Å
C32HC32sing1.09Å1.11Å
O33HO33sing0.97Å0.95Å
C34O35doub1.21Å1.27Å
C34N36sing1.35Å1.37Å
N36C37sing1.46Å1.48Å
N36HN36sing0.97Å1.02Å
C37C38sing1.53Å1.55Å
C37H371sing1.09Å1.12Å
C37H372sing1.09Å1.11Å
C38C39sing1.51Å1.52Å
C38H381sing1.09Å1.12Å
C38H382sing1.09Å1.12Å
C39O40doub1.21Å1.24Å
C39N41sing1.35Å1.33Å
N41C42sing1.46Å1.53Å
N41HN41sing0.97Å1.02Å
C42C43sing1.53Å1.45Å
C42H421sing1.09Å1.12Å
C42H422sing1.09Å1.12Å
C43S44sing1.81Å1.73Å
C43H431sing1.09Å1.11Å
C43H432sing1.09Å1.12Å
S44HS44sing1.34Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C2N1C6121.0°121.2°
N1C2N3121.9°122.5°
N1C2HC2119.5°118.8°
N1C6C5117.8°118.5°
N1C6N7122.7°120.8°
N3C2HC2118.6°118.8°
C2N3C4119.4°120.6°
N3C4C5120.7°119.1°
N3C4N10133.8°134.9°
C5C4N10105.5°106.0°
C4C5C6119.3°118.1°
C4C5N8114.2°107.2°
C4N10C9109.5°107.4°
C4N10C11124.5°126.3°
C6C5N8126.5°134.7°
C5C6N7119.6°120.8°
C5N8C9104.9°109.4°
C6N7HN71122.7°120.0°
C6N7HN72107.5°120.0°
HN71N7HN72107.5°120.0°
N8C9N10105.9°110.0°
N8C9HC9126.8°125.0°
N10C9HC9127.3°125.0°
C9N10C11126.0°126.3°
N10C11C12117.2°110.7°
N10C11O17111.4°110.6°
N10C11HC11101.3°110.5°
C12C11O17105.4°103.5°
C12C11HC11107.8°110.6°
C11C12O13112.6°110.9°
C11C12C14101.3°102.0°
C11C12HC12114.8°110.9°
O17C11HC11114.0°110.7°
C11O17C16107.4°107.0°
O13C12C14114.7°110.9°
O13C12HC12101.4°110.9°
C12O13HO13112.6°106.7°
C14C12HC12112.7°111.0°
C12C14O15107.9°110.5°
C12C14C16101.6°104.0°
C12C14HC14116.3°110.4°
O15C14C16112.2°110.8°
O15C14HC14106.5°110.4°
C14O15HO15107.8°106.8°
C16C14HC14112.3°110.5°
C14C16O17110.1°107.4°
C14C16C18109.5°109.9°
C14C16HC16109.1°109.8°
O17C16C18109.5°109.9°
O17C16HC16109.0°109.9°
C18C16HC16109.6°109.9°
C16C18O19110.1°109.5°
C16C18H181112.0°109.5°
C16C18H182112.0°109.5°
O19C18H181111.9°109.5°
O19C18H182112.0°109.4°
C18O19P20121.6°106.8°
H181C18H18298.4°109.5°
O19P20O21110.9°109.5°
O19P20O22111.0°109.5°
O19P20O23101.1°109.5°
O21P20O22111.0°109.5°
O21P20O23111.6°109.4°
P20O21HO21110.9°106.8°
O22P20O23110.8°109.4°
P20O23P24127.5°106.8°
O23P24O25110.7°109.5°
O23P24O26107.7°109.4°
O23P24O27103.1°109.5°
O25P24O26111.3°109.5°
O25P24O27114.4°109.5°
P24O25HO25110.6°106.8°
O26P24O27109.2°109.5°
P24O27C28126.5°106.8°
O27C28C29105.1°109.5°
O27C28H281113.9°109.4°
O27C28H282113.9°109.4°
C29C28H281113.9°109.5°
C29C28H282113.8°109.5°
C28C29C30106.5°109.5°
C28C29C31110.6°109.5°
C28C29C32107.1°109.5°
H281C28H28296.6°109.5°
C30C29C31108.6°109.4°
C30C29C32112.4°109.5°
C29C30H301106.6°109.5°
C29C30H302113.3°109.5°
C29C30H303113.4°109.5°
C31C29C32111.5°109.5°
C29C31H311110.6°109.5°
C29C31H312111.8°109.5°
C29C31H313111.8°109.5°
C29C32O33110.3°109.5°
C29C32C34112.7°109.4°
C29C32HC32106.1°109.5°
H301C30H302113.3°109.5°
H301C30H303113.3°109.5°
H302C30H30397.1°109.5°
H311C31H312111.7°109.4°
H311C31H313111.9°109.4°
H312C31H31398.7°109.5°
O33C32C34107.6°109.5°
O33C32HC32111.2°109.5°
C32O33HO33110.4°106.8°
C34C32HC32108.9°109.5°
C32C34O35119.6°120.0°
C32C34N36116.4°120.0°
O35C34N36124.1°119.9°
C34N36C37123.9°120.0°
C34N36HN36113.7°119.9°
C37N36HN36122.4°120.0°
N36C37C38109.3°109.5°
N36C37H371112.3°109.5°
N36C37H372112.3°109.4°
C38C37H371112.3°109.5°
C38C37H372112.3°109.5°
C37C38C39110.8°109.5°
C37C38H381111.7°109.5°
C37C38H382111.7°109.5°
H371C37H37298.2°109.5°
C39C38H381111.7°109.4°
C39C38H382111.7°109.5°
C38C39O40122.0°120.0°
C38C39N41115.6°120.0°
H381C38H38298.6°109.5°
O40C39N41122.4°120.0°
C39N41C42125.8°120.0°
C39N41HN41109.3°120.0°
C42N41HN41124.9°120.0°
N41C42C43107.9°109.5°
N41C42H421112.8°109.5°
N41C42H422112.8°109.4°
C43C42H421112.8°109.5°
C43C42H422112.8°109.5°
C42C43S44105.6°109.5°
C42C43H431113.6°109.5°
C42C43H432113.7°109.5°
H421C42H42297.6°109.5°
S44C43H431113.7°109.5°
S44C43H432113.7°109.5°
C43S44HS44105.6°100.0°
H431C43H43296.8°109.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
N1C2N3HC2180.0°180.0°
N1C2N3C40.0°0.2°
C2N1C6C50.3°0.0°
C2N1C6N7180.0°180.0°
C6N1C2N30.3°0.0°
C6N1C2HC2179.7°180.0°
N1C6C5C40.1°0.3°
N1C6C5N7179.7°180.0°
N1C6C5N8179.9°180.0°
N1C6N7HN71180.0°0.1°
N1C6N7HN7254.8°180.0°
C2N3C4C50.2°0.5°
C2N3C4N10179.8°179.6°
HC2C2N3C4180.0°179.8°
N3C4C5N10179.7°179.3°
N3C4C5C60.2°0.6°
N3C4C5N8179.9°179.7°
N3C4N10C9179.9°179.5°
N3C4N10C110.9°0.7°
C4C5C6N8180.0°179.7°
C4C5C6N7179.8°179.7°
C4C5N8C90.0°0.3°
C5C4N10C90.3°0.4°
C5C4N10C11179.5°179.9°
N10C4C5C6179.9°179.8°
N10C4C5N80.2°0.4°
C4N10C9N80.3°0.2°
C4N10C9C11179.2°179.8°
C4N10C9HC9179.7°179.8°
C4N10C11C12125.3°94.1°
C4N10C11O17113.2°151.8°
C4N10C11HC118.4°28.8°
C5C6N7HN710.3°179.9°
C5C6N7HN72124.9°0.0°
C6C5N8C9179.9°180.0°
N8C5C6N70.1°0.0°
C5N8C9N100.2°0.0°
C5N8C9HC9179.8°180.0°
C6N7HN71HN72125.2°179.9°
N8C9N10HC9180.0°180.0°
N8C9N10C11179.5°180.0°
C9N10C11C1255.6°85.6°
C9N10C11O1765.9°28.5°
C9N10C11HC11172.5°151.5°
HC9C9N10C110.5°0.0°
N10C11C12O17124.6°118.6°
N10C11C12HC11113.3°122.9°
N10C11O17HC11113.9°122.9°
N10C11C12O1375.9°86.2°
N10C11C12C14161.2°155.7°
N10C11C12HC1239.5°37.5°
N10C11O17C16151.6°158.7°
C12C11O17HC11118.0°118.5°
C11C12O13C14115.1°112.6°
C11C12O13HC12123.2°123.7°
C11C12C14HC12123.1°118.2°
C11C12O13HO13180.0°179.9°
C11C12C14O1584.0°97.9°
C11C12C14C1634.2°21.0°
C11C12C14HC14156.5°139.6°
C12C11O17C1623.5°40.1°
O17C11C12O13159.6°155.2°
O17C11C12C1436.6°37.1°
O17C11C12HC1285.1°81.1°
C11O17C16C140.9°26.4°
C11O17C16C18121.4°145.9°
C11O17C16HC16118.7°93.0°
HC11C11C12O1337.5°36.7°
HC11C11C12C1485.5°81.4°
HC11C11C12HC12152.9°160.3°
HC11C11O17C1694.5°78.4°
O13C12C14HC12115.3°123.6°
O13C12C14O1537.6°20.2°
O13C12C14C16155.7°139.2°
O13C12C14HC1482.0°102.3°
C14C12O13HO1364.9°67.3°
C12C14O15C16111.2°114.8°
C12C14O15HC14125.6°122.5°
C12C14C16HC14125.0°118.5°
C12C14O15HO15180.0°61.4°
C12C14C16O1722.2°1.9°
C12C14C16C1898.3°121.4°
C12C14C16HC16141.8°117.6°
HC12C12O13HO1356.8°56.4°
HC12C12C14O15152.9°143.8°
HC12C12C14C1688.9°97.2°
HC12C12C14HC1433.4°21.3°
O15C14C16HC14120.0°122.7°
O15C14C16O1792.9°120.6°
O15C14C16C18146.7°119.8°
O15C14C16HC1626.7°1.2°
C16C14O15HO1568.8°176.2°
C14C16O17C18120.5°119.5°
C14C16O17HC16119.6°119.4°
C14C16C18HC16119.6°120.9°
C14C16C18O1958.6°179.7°
C14C16C18H181176.1°59.7°
C14C16C18H18266.6°60.3°
HC14C14O15HO1554.4°61.1°
HC14C14C16O17147.2°116.6°
HC14C14C16C1826.7°2.9°
HC14C14C16HC1693.2°123.9°
O17C16C18HC16119.6°121.1°
O17C16C18O1962.2°61.7°
O17C16C18H18163.0°58.2°
O17C16C18H182172.5°178.3°
C16C18O19H181125.3°120.0°
C16C18O19H182125.3°120.0°
C16C18H181H182117.9°120.1°
C16C18O19P20175.1°180.0°
HC16C16C18O19178.2°59.4°
HC16C16C18H18156.5°179.3°
HC16C16C18H18252.9°60.6°
O19C18H181H182117.9°120.0°
C18O19P20O21164.3°60.0°
C18O19P20O2271.8°60.0°
C18O19P20O2345.9°180.0°
H181C18O19P2059.6°60.0°
H182C18O19P2049.8°60.0°
O19P20O21O22123.9°120.0°
O19P20O21O23111.9°120.1°
O19P20O22O23111.5°120.1°
O19P20O21HO21180.0°60.0°
O19P20O23P2489.1°180.0°
O21P20O22O23124.6°119.9°
O21P20O23P2428.9°60.0°
O22P20O21HO2156.1°180.0°
O22P20O23P24153.1°60.0°
O23P20O21HO2168.1°60.0°
P20O23P24O2555.2°60.0°
P20O23P24O2666.7°60.0°
P20O23P24O27178.0°180.0°
O23P24O25O26119.7°120.0°
O23P24O25O27115.9°120.0°
O23P24O26O27111.2°120.0°
O23P24O25HO25180.0°60.0°
O23P24O27C28179.6°180.0°
O25P24O26O27127.3°120.0°
O25P24O27C2860.1°60.0°
O26P24O25HO2560.3°180.0°
O26P24O27C2865.4°60.0°
O27P24O25HO2564.1°60.0°
P24O27C28C29178.6°180.0°
P24O27C28H28156.1°60.0°
P24O27C28H28253.3°60.0°
O27C28C29H281125.3°120.0°
O27C28C29H282125.3°119.9°
O27C28H281H282119.8°119.9°
O27C28C29C3057.9°60.0°
O27C28C29C3159.9°60.0°
O27C28C29C32178.4°180.0°
C29C28H281H282119.7°120.1°
C28C29C30C31119.1°120.0°
C28C29C30C32117.0°120.0°
C28C29C31C32119.0°120.0°
C28C29C30H301180.0°53.0°
C28C29C30H30254.8°67.0°
C28C29C30H30354.7°173.0°
C28C29C31H311180.0°63.8°
C28C29C31H31254.8°176.2°
C28C29C31H31354.7°56.2°
C28C29C32O3358.4°65.8°
C28C29C32C34178.7°54.1°
C28C29C32HC3262.2°174.1°
H281C28C29C30176.8°60.0°
H281C28C29C3165.4°179.9°
H281C28C29C3256.3°60.1°
H282C28C29C3067.3°180.0°
H282C28C29C31174.8°60.0°
H282C28C29C3253.1°60.0°
C30C29C31C32124.4°120.0°
C29C30H301H302125.3°120.0°
C29C30H301H303125.3°120.0°
C29C30H302H303119.3°120.0°
C30C29C31H31163.4°176.2°
C30C29C31H31261.8°56.2°
C30C29C31H313171.3°63.8°
C30C29C32O3358.2°174.1°
C30C29C32C3462.1°65.9°
C30C29C32HC32178.8°54.1°
C31C29C30H30160.9°173.0°
C31C29C30H302173.9°53.0°
C31C29C30H30364.4°67.0°
C29C31H311H312125.2°120.1°
C29C31H311H313125.3°120.0°
C29C31H312H313117.7°120.1°
C31C29C32O33179.5°54.1°
C31C29C32C3460.1°174.1°
C31C29C32HC3258.9°65.9°
C32C29C30H30163.0°67.0°
C32C29C30H30262.2°173.0°
C32C29C30H303171.7°53.0°
C32C29C31H31161.0°56.2°
C32C29C31H312173.8°63.8°
C32C29C31H31364.3°176.2°
C29C32O33C34123.3°120.0°
C29C32O33HC32117.5°120.0°
C29C32C34HC32117.4°120.0°
C29C32O33HO33180.0°59.9°
C29C32C34O3591.8°109.2°
C29C32C34N3688.1°70.8°
H301C30H302H303119.1°120.0°
H311C31H312H313117.8°119.9°
O33C32C34HC32120.7°120.0°
O33C32C34O35146.4°10.8°
O33C32C34N3633.8°169.2°
C34C32O33HO3356.7°60.1°
C32C34O35N36179.8°180.0°
C32C34N36C37180.0°176.3°
C32C34N36HN360.0°3.7°
HC32C32O33HO3362.5°179.9°
HC32C32C34O3525.7°130.8°
HC32C32C34N36154.5°49.1°
O35C34N36C370.2°3.7°
O35C34N36HN36179.8°176.3°
C34N36C37HN36180.0°179.9°
C34N36C37C3899.6°180.0°
C34N36C37H371135.1°60.0°
C34N36C37H37225.6°60.1°
N36C37C38H371125.3°120.0°
N36C37C38H372125.3°119.9°
N36C37H371H372118.2°120.0°
N36C37C38C3976.4°179.9°
N36C37C38H38148.9°60.0°
N36C37C38H382158.3°60.1°
HN36N36C37C3880.4°0.1°
HN36N36C37H37144.9°120.0°
HN36N36C37H372154.4°120.0°
C38C37H371H372118.2°120.0°
C37C38C39H381125.3°120.0°
C37C38C39H382125.3°120.0°
C37C38H381H382117.6°120.0°
C37C38C39O4077.6°0.0°
C37C38C39N41102.1°180.0°
H371C37C38C39158.3°60.0°
H371C37C38H38176.4°180.0°
H371C37C38H38233.0°60.0°
H372C37C38C3948.8°60.0°
H372C37C38H381174.2°59.9°
H372C37C38H38276.4°180.0°
C39C38H381H382117.6°120.0°
C38C39O40N41179.7°180.0°
C38C39N41C42179.9°179.9°
C38C39N41HN410.1°0.0°
H381C38C39O40157.1°120.0°
H381C38C39N4123.2°60.0°
H382C38C39O4047.7°120.0°
H382C38C39N41132.6°60.0°
O40C39N41C420.2°0.0°
O40C39N41HN41179.8°180.0°
C39N41C42HN41180.0°179.9°
C39N41C42C4387.8°180.0°
C39N41C42H421146.9°60.0°
C39N41C42H42237.5°60.0°
N41C42C43H421125.3°120.0°
N41C42C43H422125.3°120.0°
N41C42H421H422118.7°119.9°
N41C42C43S44180.0°180.0°
N41C42C43H43154.7°59.9°
N41C42C43H43254.7°60.0°
HN41N41C42C4392.2°0.1°
HN41N41C42H42133.1°120.0°
HN41N41C42H422142.5°120.0°
C43C42H421H422118.8°120.0°
C42C43S44H431125.2°120.1°
C42C43S44H432125.3°120.0°
C42C43H431H432119.6°120.0°
C42C43S44HS44180.0°180.0°
H421C42C43S4454.7°60.0°
H421C42C43H431180.0°180.0°
H421C42C43H43270.5°60.0°
H422C42C43S4454.7°60.0°
H422C42C43H43170.5°60.0°
H422C42C43H432180.0°180.0°
S44C43H431H432119.6°119.9°
H431C43S44HS4454.8°59.9°
H432C43S44HS4454.7°60.0°

224201

PDB entries from 2024-08-28

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