CMR
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| P | CMP | sing | 1.78Å | 1.80Å | |
| P | OP1 | doub | 1.50Å | 1.45Å | |
| P | O5' | sing | 1.62Å | 1.61Å | |
| P | OP3 | sing | 1.62Å | 10.34Å | |
| CMP | HMP1 | sing | 1.09Å | 1.08Å | |
| CMP | HMP2 | sing | 1.09Å | 1.08Å | |
| CMP | HMP3 | sing | 1.09Å | 1.08Å | |
| O5' | C5' | sing | 1.42Å | 1.42Å | |
| C5' | C4' | sing | 1.52Å | 1.53Å | |
| C5' | H5' | sing | 1.09Å | 1.09Å | |
| C5' | H5'' | sing | 1.09Å | 1.09Å | |
| C4' | O4' | sing | 1.44Å | 1.42Å | |
| C4' | C3' | sing | 1.52Å | 1.54Å | |
| C4' | H4' | sing | 1.09Å | 1.09Å | |
| O4' | C1' | sing | 1.43Å | 1.41Å | |
| C1' | N1 | sing | 1.43Å | 1.50Å | |
| C1' | C2' | sing | 1.52Å | 1.53Å | |
| C1' | H1' | sing | 1.10Å | 1.10Å | |
| N1 | C6 | sing | 1.39Å | 1.37Å | |
| N1 | C2 | sing | 1.42Å | 1.41Å | |
| C6 | C5 | doub | 1.33Å | 1.35Å | |
| C6 | H6 | sing | 1.09Å | 1.08Å | |
| C5 | C4 | sing | 1.49Å | 1.42Å | |
| C5 | H5 | sing | 1.08Å | 1.08Å | |
| C4 | N4 | sing | 1.38Å | 1.31Å | |
| C4 | N3 | doub | 1.31Å | 1.33Å | |
| N4 | H41 | sing | 0.99Å | 1.01Å | |
| N4 | H42 | sing | 0.99Å | 1.02Å | |
| N3 | C2 | sing | 1.38Å | 1.36Å | |
| C2 | O2 | doub | 1.23Å | 1.24Å | |
| C3' | C2' | sing | 1.51Å | 1.53Å | |
| C3' | O3' | sing | 1.43Å | 1.42Å | |
| C3' | H3' | sing | 1.09Å | 1.09Å | |
| C2' | H2' | sing | 1.10Å | 1.09Å | |
| C2' | H2'' | sing | 1.09Å | 1.09Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| OP3 | HOP3 | sing | 0.98Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| CMP | P | OP1 | 117.2° | 113.7° |
| CMP | P | O5' | 112.3° | 105.7° |
| CMP | P | OP3 | 59.3° | 103.7° |
| P | CMP | HMP1 | 109.5° | 110.1° |
| P | CMP | HMP2 | 109.5° | 110.0° |
| P | CMP | HMP3 | 109.5° | 110.1° |
| OP1 | P | O5' | 105.4° | 114.3° |
| OP1 | P | OP3 | 137.9° | 114.0° |
| O5' | P | OP3 | 53.8° | 104.4° |
| P | O5' | C5' | 119.5° | 121.0° |
| P | OP3 | HOP3 | 59.3° | 118.9° |
| HMP1 | CMP | HMP2 | 109.4° | 108.8° |
| HMP1 | CMP | HMP3 | 109.4° | 108.9° |
| HMP2 | CMP | HMP3 | 109.5° | 108.9° |
| O5' | C5' | C4' | 113.6° | 108.9° |
| O5' | C5' | H5' | 108.8° | 109.0° |
| O5' | C5' | H5'' | 109.3° | 108.9° |
| C4' | C5' | H5' | 108.0° | 110.3° |
| C4' | C5' | H5'' | 108.8° | 110.3° |
| C5' | C4' | O4' | 110.1° | 107.9° |
| C5' | C4' | C3' | 113.0° | 112.9° |
| C5' | C4' | H4' | 107.6° | 109.5° |
| H5' | C5' | H5'' | 108.3° | 109.3° |
| O4' | C4' | C3' | 108.9° | 106.2° |
| O4' | C4' | H4' | 108.1° | 107.9° |
| C4' | O4' | C1' | 110.1° | 109.3° |
| C3' | C4' | H4' | 109.2° | 112.2° |
| C4' | C3' | C2' | 102.1° | 103.1° |
| C4' | C3' | O3' | 107.8° | 109.9° |
| C4' | C3' | H3' | 110.9° | 113.5° |
| O4' | C1' | N1 | 107.2° | 109.3° |
| O4' | C1' | C2' | 104.5° | 107.4° |
| O4' | C1' | H1' | 109.6° | 108.0° |
| N1 | C1' | C2' | 114.3° | 112.8° |
| N1 | C1' | H1' | 111.7° | 107.8° |
| C1' | N1 | C6 | 119.3° | 118.6° |
| C1' | N1 | C2 | 120.6° | 122.0° |
| C2' | C1' | H1' | 109.3° | 111.5° |
| C1' | C2' | C3' | 104.4° | 102.5° |
| C1' | C2' | H2' | 111.6° | 110.6° |
| C1' | C2' | H2'' | 110.8° | 111.7° |
| C6 | N1 | C2 | 119.6° | 119.4° |
| N1 | C6 | C5 | 120.9° | 122.7° |
| N1 | C6 | H6 | 118.2° | 116.2° |
| N1 | C2 | N3 | 120.2° | 118.8° |
| N1 | C2 | O2 | 122.6° | 121.0° |
| C5 | C6 | H6 | 120.8° | 121.1° |
| C6 | C5 | C4 | 117.2° | 116.3° |
| C6 | C5 | H5 | 119.8° | 123.1° |
| C4 | C5 | H5 | 123.0° | 120.6° |
| C5 | C4 | N4 | 119.3° | 118.2° |
| C5 | C4 | N3 | 123.2° | 121.7° |
| N4 | C4 | N3 | 117.5° | 120.2° |
| C4 | N4 | H41 | 117.5° | 118.0° |
| C4 | N4 | H42 | 121.7° | 118.0° |
| C4 | N3 | C2 | 118.8° | 121.1° |
| H41 | N4 | H42 | 120.6° | 123.9° |
| N3 | C2 | O2 | 117.2° | 120.2° |
| C2' | C3' | O3' | 115.0° | 109.7° |
| C2' | C3' | H3' | 110.8° | 113.2° |
| C3' | C2' | H2' | 111.7° | 109.7° |
| C3' | C2' | H2'' | 108.5° | 114.1° |
| O3' | C3' | H3' | 109.9° | 107.4° |
| C3' | O3' | HO3' | 107.8° | 107.3° |
| H2' | C2' | H2'' | 109.7° | 108.3° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| CMP | P | OP1 | O5' | 125.8° | 121.5° |
| CMP | P | OP1 | OP3 | 73.3° | 118.6° |
| CMP | P | O5' | OP3 | 9.9° | 109.0° |
| P | CMP | HMP1 | HMP2 | 120.0° | 120.7° |
| P | CMP | HMP1 | HMP3 | 120.1° | 120.8° |
| P | CMP | HMP2 | HMP3 | 120.1° | 120.7° |
| CMP | P | O5' | C5' | 176.3° | 60.0° |
| CMP | P | OP3 | HOP3 | 180.0° | 175.5° |
| OP1 | P | O5' | OP3 | 138.7° | 125.2° |
| OP1 | P | CMP | HMP1 | 54.3° | 44.9° |
| OP1 | P | CMP | HMP2 | 174.3° | 164.8° |
| OP1 | P | CMP | HMP3 | 65.7° | 75.2° |
| OP1 | P | O5' | C5' | 47.5° | 174.2° |
| OP1 | P | OP3 | HOP3 | 82.2° | 51.4° |
| O5' | P | CMP | HMP1 | 68.0° | 81.3° |
| O5' | P | CMP | HMP2 | 51.9° | 38.7° |
| O5' | P | CMP | HMP3 | 172.0° | 158.7° |
| P | O5' | C5' | C4' | 173.1° | 180.0° |
| P | O5' | C5' | H5' | 52.9° | 59.6° |
| P | O5' | C5' | H5'' | 65.2° | 59.6° |
| O5' | P | OP3 | HOP3 | 10.7° | 74.0° |
| OP3 | P | CMP | HMP1 | 77.3° | 169.3° |
| OP3 | P | CMP | HMP2 | 42.6° | 70.8° |
| OP3 | P | CMP | HMP3 | 162.7° | 49.2° |
| OP3 | P | O5' | C5' | 173.8° | 49.0° |
| HMP1 | CMP | HMP2 | HMP3 | 119.9° | 118.6° |
| O5' | C5' | C4' | H5' | 120.7° | 119.6° |
| O5' | C5' | C4' | H5'' | 121.9° | 119.5° |
| O5' | C5' | H5' | H5'' | 118.7° | 119.0° |
| O5' | C5' | C4' | O4' | 66.7° | 62.4° |
| O5' | C5' | C4' | C3' | 55.2° | 179.5° |
| O5' | C5' | C4' | H4' | 175.8° | 54.7° |
| C4' | C5' | H5' | H5'' | 117.6° | 121.5° |
| C5' | C4' | O4' | C3' | 124.3° | 121.4° |
| C5' | C4' | O4' | H4' | 117.2° | 118.2° |
| C5' | C4' | C3' | H4' | 119.6° | 124.3° |
| C5' | C4' | O4' | C1' | 136.5° | 108.6° |
| C5' | C4' | C3' | C2' | 114.1° | 88.8° |
| C5' | C4' | C3' | O3' | 124.4° | 154.2° |
| C5' | C4' | C3' | H3' | 4.0° | 34.0° |
| H5' | C5' | C4' | O4' | 172.6° | 57.1° |
| H5' | C5' | C4' | C3' | 65.5° | 60.0° |
| H5' | C5' | C4' | H4' | 55.0° | 174.3° |
| H5'' | C5' | C4' | O4' | 55.2° | 178.1° |
| H5'' | C5' | C4' | C3' | 177.2° | 61.0° |
| H5'' | C5' | C4' | H4' | 62.3° | 64.8° |
| O4' | C4' | C3' | H4' | 117.8° | 117.6° |
| C4' | O4' | C1' | N1 | 149.3° | 131.7° |
| C4' | O4' | C1' | C2' | 27.6° | 9.0° |
| C4' | O4' | C1' | H1' | 89.3° | 111.3° |
| O4' | C4' | C3' | C2' | 8.5° | 29.2° |
| O4' | C4' | C3' | O3' | 113.0° | 87.7° |
| O4' | C4' | C3' | H3' | 126.6° | 152.1° |
| C3' | C4' | O4' | C1' | 12.2° | 12.7° |
| C4' | C3' | C2' | C1' | 24.1° | 33.4° |
| C4' | C3' | C2' | O3' | 116.4° | 117.1° |
| C4' | C3' | C2' | H3' | 118.1° | 123.0° |
| C4' | C3' | O3' | H3' | 120.9° | 123.9° |
| C4' | C3' | C2' | H2' | 144.8° | 84.1° |
| C4' | C3' | C2' | H2'' | 94.1° | 154.3° |
| C4' | C3' | O3' | HO3' | 180.0° | 128.0° |
| H4' | C4' | O4' | C1' | 106.3° | 133.2° |
| H4' | C4' | C3' | C2' | 126.3° | 146.9° |
| H4' | C4' | C3' | O3' | 4.8° | 29.9° |
| H4' | C4' | C3' | H3' | 115.6° | 90.3° |
| O4' | C1' | N1 | C2' | 115.2° | 119.4° |
| O4' | C1' | N1 | H1' | 120.0° | 117.1° |
| O4' | C1' | C2' | H1' | 117.2° | 118.1° |
| O4' | C1' | N1 | C6 | 50.2° | 32.9° |
| O4' | C1' | N1 | C2 | 121.8° | 147.1° |
| O4' | C1' | C2' | C3' | 32.1° | 26.9° |
| O4' | C1' | C2' | H2' | 153.0° | 90.0° |
| O4' | C1' | C2' | H2'' | 84.5° | 149.4° |
| N1 | C1' | C2' | H1' | 126.0° | 121.4° |
| C1' | N1 | C6 | C2 | 172.0° | 180.0° |
| C1' | N1 | C6 | C5 | 169.2° | 180.0° |
| C1' | N1 | C6 | H6 | 8.0° | 0.0° |
| C1' | N1 | C2 | N3 | 170.8° | 180.0° |
| C1' | N1 | C2 | O2 | 9.5° | 0.0° |
| N1 | C1' | C2' | C3' | 148.9° | 147.4° |
| N1 | C1' | C2' | H2' | 90.2° | 30.6° |
| N1 | C1' | C2' | H2'' | 32.3° | 90.1° |
| C2' | C1' | N1 | C6 | 65.0° | 86.5° |
| C2' | C1' | N1 | C2 | 123.0° | 93.5° |
| C1' | C2' | C3' | H2' | 120.7° | 117.5° |
| C1' | C2' | C3' | H2'' | 118.2° | 120.8° |
| C1' | C2' | C3' | O3' | 92.3° | 83.6° |
| C1' | C2' | C3' | H3' | 142.2° | 156.4° |
| C1' | C2' | H2' | H2'' | 123.1° | 122.7° |
| H1' | C1' | N1 | C6 | 170.3° | 150.0° |
| H1' | C1' | N1 | C2 | 1.7° | 30.0° |
| H1' | C1' | C2' | C3' | 85.1° | 91.2° |
| H1' | C1' | C2' | H2' | 35.8° | 151.9° |
| H1' | C1' | C2' | H2'' | 158.3° | 31.3° |
| N1 | C6 | C5 | H6 | 177.1° | 180.0° |
| N1 | C6 | C5 | C4 | 2.1° | 0.0° |
| N1 | C6 | C5 | H5 | 179.2° | 179.9° |
| C6 | N1 | C2 | N3 | 1.1° | 0.0° |
| C6 | N1 | C2 | O2 | 178.5° | 180.0° |
| C2 | N1 | C6 | C5 | 2.9° | 0.0° |
| C2 | N1 | C6 | H6 | 179.9° | 180.0° |
| N1 | C2 | N3 | C4 | 1.4° | 0.0° |
| N1 | C2 | N3 | O2 | 179.7° | 180.0° |
| C6 | C5 | C4 | H5 | 178.7° | 179.9° |
| C6 | C5 | C4 | N4 | 178.1° | 180.0° |
| C6 | C5 | C4 | N3 | 0.6° | 0.0° |
| H6 | C6 | C5 | C4 | 179.2° | 180.0° |
| H6 | C6 | C5 | H5 | 2.1° | 0.0° |
| C5 | C4 | N4 | N3 | 178.8° | 180.0° |
| C5 | C4 | N4 | H41 | 173.8° | 17.7° |
| C5 | C4 | N4 | H42 | 1.6° | 162.4° |
| C5 | C4 | N3 | C2 | 2.3° | 0.0° |
| H5 | C5 | C4 | N4 | 3.2° | 0.1° |
| H5 | C5 | C4 | N3 | 178.1° | 179.9° |
| C4 | N4 | H41 | H42 | 175.4° | 179.9° |
| N4 | C4 | N3 | C2 | 176.4° | 180.0° |
| N3 | C4 | N4 | H41 | 7.4° | 162.3° |
| N3 | C4 | N4 | H42 | 177.2° | 17.6° |
| C4 | N3 | C2 | O2 | 178.9° | 180.0° |
| C2' | C3' | O3' | H3' | 125.9° | 123.4° |
| C3' | C2' | H2' | H2'' | 120.4° | 125.1° |
| C2' | C3' | O3' | HO3' | 66.9° | 119.3° |
| O3' | C3' | C2' | H2' | 28.4° | 158.9° |
| O3' | C3' | C2' | H2'' | 149.5° | 37.2° |
| H3' | C3' | C2' | H2' | 97.0° | 38.9° |
| H3' | C3' | C2' | H2'' | 24.0° | 82.7° |
| H3' | C3' | O3' | HO3' | 59.1° | 4.1° |
