CM0

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
P	O5'	sing	1.62Å	1.58Å
P	O3P	sing	1.62Å	1.61Å
O5'	C5'	sing	1.42Å	1.43Å
P	O1P	doub	1.50Å	1.49Å
P	O2P	sing	1.62Å	1.50Å
C3'	C4'	sing	1.52Å	1.51Å
C5'	C4'	sing	1.52Å	1.50Å
N1	C2	sing	1.41Å	1.38Å
C4'	O4'	sing	1.44Å	1.45Å
C3'	C2'	sing	1.51Å	1.52Å
C2	O2	doub	1.23Å	1.23Å
C2	N3	sing	1.40Å	1.37Å
C5	C4	sing	1.48Å	1.48Å
N3	C4	sing	1.39Å	1.40Å
C4	O4	doub	1.23Å	1.22Å
C5	C6	doub	1.34Å	1.35Å
N1	C6	sing	1.39Å	1.38Å
C7	C8	sing	1.50Å	1.50Å
C5	O5	sing	1.38Å	1.33Å
C7	O5	sing	1.41Å	1.53Å
C8	O8	sing	1.36Å	1.37Å
N1	C1'	sing	1.43Å	1.48Å
C2'	C1'	sing	1.52Å	1.53Å
O4'	C1'	sing	1.44Å	1.42Å
C2'	O2'	sing	1.41Å	1.41Å
C8	O9	doub	1.22Å	1.22Å
C3'	O3'	sing	1.43Å	1.40Å
O2P	H2P	sing	0.98Å	0.95Å
O3P	H3P	sing	0.98Å	0.95Å
C5'	H5'1	sing	1.09Å	1.10Å
C5'	H5'2	sing	1.09Å	1.10Å
C4'	H4'	sing	1.09Å	1.10Å
C3'	H3'	sing	1.09Å	1.10Å
C1'	H1'	sing	1.09Å	1.10Å
C2'	H2'	sing	1.10Å	1.10Å
C6	H6	sing	1.09Å	1.08Å
N3	H3	sing	1.02Å	1.00Å
C7	H7C1	sing	1.09Å	1.10Å
C7	H7C2	sing	1.09Å	1.10Å
O8	H8	sing	0.98Å	0.95Å
O2'	HA	sing	0.97Å	0.95Å
O3'	HB	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O5'	P	O3P	102.1°	102.9°
P	O5'	C5'	121.9°	118.5°
O5'	P	O1P	110.1°	114.9°
O5'	P	O2P	106.2°	103.7°
O3P	P	O1P	107.2°	115.0°
O3P	P	O2P	109.0°	103.3°
P	O3P	H3P	109.5°	118.9°
O5'	C5'	C4'	109.1°	108.6°
O5'	C5'	H5'1	109.6°	109.2°
O5'	C5'	H5'2	109.7°	109.3°
O1P	P	O2P	120.7°	115.3°
P	O2P	H2P	109.5°	118.9°
C3'	C4'	C5'	112.7°	113.3°
C3'	C4'	O4'	104.5°	105.9°
C4'	C3'	C2'	103.6°	102.1°
C4'	C3'	O3'	110.8°	107.9°
C3'	C4'	H4'	110.6°	112.2°
C4'	C3'	H3'	114.1°	114.5°
C5'	C4'	O4'	109.1°	108.2°
C4'	C5'	H5'1	109.6°	110.1°
C4'	C5'	H5'2	109.7°	110.1°
C5'	C4'	H4'	106.1°	109.3°
N1	C2	O2	123.4°	123.7°
N1	C2	N3	114.6°	115.2°
C2	N1	C6	120.1°	120.1°
C2	N1	C1'	118.5°	119.9°
C4'	O4'	C1'	110.3°	109.2°
O4'	C4'	H4'	114.1°	107.7°
C3'	C2'	C1'	101.8°	102.0°
C3'	C2'	O2'	112.0°	112.3°
C2'	C3'	O3'	113.8°	110.3°
C2'	C3'	H3'	111.1°	114.0°
C3'	C2'	H2'	113.3°	110.1°
O2	C2	N3	122.0°	121.1°
C2	N3	C4	128.6°	126.9°
C2	N3	H3	115.7°	116.6°
C5	C4	N3	114.7°	114.6°
C5	C4	O4	129.7°	121.4°
C4	C5	C6	115.3°	119.1°
C4	C5	O5	119.8°	117.6°
N3	C4	O4	115.6°	124.1°
C4	N3	H3	115.7°	116.5°
C5	C6	N1	126.7°	124.1°
C6	C5	O5	125.0°	123.4°
C5	C6	H6	116.6°	120.9°
C6	N1	C1'	121.4°	119.9°
N1	C6	H6	116.6°	115.0°
C8	C7	O5	121.6°	109.8°
C7	C8	O8	122.6°	110.2°
C7	C8	O9	118.3°	125.8°
C8	C7	H7C1	105.6°	109.4°
C8	C7	H7C2	102.8°	110.1°
C5	O5	C7	136.1°	112.8°
O5	C7	H7C1	105.6°	108.3°
O5	C7	H7C2	102.8°	109.0°
O8	C8	O9	119.1°	124.0°
C8	O8	H8	109.5°	111.9°
N1	C1'	C2'	115.4°	112.5°
N1	C1'	O4'	108.3°	109.0°
N1	C1'	H1'	105.6°	107.3°
C2'	C1'	O4'	107.4°	106.5°
C1'	C2'	O2'	110.8°	112.6°
C2'	C1'	H1'	106.4°	112.6°
C1'	C2'	H2'	114.5°	111.1°
O4'	C1'	H1'	113.9°	108.9°
O2'	C2'	H2'	104.6°	108.6°
C2'	O2'	HA	109.5°	107.2°
O3'	C3'	H3'	103.9°	107.8°
C3'	O3'	HB	109.5°	106.4°
H5'1	C5'	H5'2	109.2°	109.6°
H7C1	C7	H7C2	119.5°	110.2°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O5'	P	O3P	O1P	115.7°	125.8°
O5'	P	O3P	O2P	112.1°	107.7°
O5'	P	O1P	O2P	124.2°	120.6°
P	O5'	C5'	C4'	174.5°	150.0°
O5'	P	O2P	H2P	155.1°	175.4°
O5'	P	O3P	H3P	120.1°	173.8°
P	O5'	C5'	H5'1	65.5°	90.0°
P	O5'	C5'	H5'2	54.4°	29.9°
O3P	P	O5'	C5'	176.5°	54.2°
O3P	P	O1P	O2P	125.5°	120.1°
O3P	P	O2P	H2P	45.8°	77.5°
C5'	O5'	P	O1P	69.9°	180.0°
C5'	O5'	P	O2P	62.4°	53.2°
O5'	C5'	C4'	C3'	49.2°	179.5°
O5'	C5'	C4'	H5'1	120.0°	119.5°
O5'	C5'	C4'	H5'2	120.1°	119.6°
O5'	C5'	C4'	O4'	66.4°	62.4°
O5'	C5'	H5'1	H5'2	120.1°	119.6°
O5'	C5'	C4'	H4'	170.3°	54.6°
O1P	P	O2P	H2P	78.8°	48.8°
O1P	P	O3P	H3P	4.4°	48.1°
O2P	P	O3P	H3P	127.8°	78.5°
C3'	C4'	C5'	O4'	115.6°	117.1°
C3'	C4'	C5'	H4'	121.1°	125.9°
C3'	C4'	O4'	H4'	120.9°	120.2°
C4'	C3'	C2'	O3'	120.3°	114.5°
C4'	C3'	C2'	H3'	122.9°	124.0°
C4'	C3'	C2'	C1'	33.5°	37.1°
C3'	C4'	O4'	C1'	20.0°	12.8°
C4'	C3'	C2'	O2'	84.9°	158.0°
C4'	C3'	O3'	H3'	122.9°	124.2°
C3'	C4'	C5'	H5'1	70.8°	60.0°
C3'	C4'	C5'	H5'2	169.3°	60.9°
C4'	C3'	C2'	H2'	157.0°	80.9°
C4'	C3'	O3'	HB	167.3°	15.1°
C5'	C4'	O4'	H4'	118.4°	118.1°
C5'	C4'	C3'	C2'	151.8°	86.9°
C5'	C4'	O4'	C1'	140.7°	109.0°
C5'	C4'	C3'	O3'	85.8°	156.8°
C4'	C5'	H5'1	H5'2	120.2°	121.2°
C5'	C4'	C3'	H3'	31.0°	36.8°
N1	C2	O2	N3	180.0°	179.9°
N1	C2	N3	C4	0.2°	0.0°
C2	N1	C6	C5	1.7°	0.0°
C2	N1	C6	C1'	179.5°	180.0°
C2	N1	C1'	C2'	68.5°	94.4°
C2	N1	C1'	O4'	171.0°	147.7°
C2	N1	C1'	H1'	48.7°	30.0°
C2	N1	C6	H6	178.3°	179.9°
N1	C2	N3	H3	179.8°	180.0°
O4'	C4'	C3'	C2'	33.5°	31.5°
C4'	O4'	C1'	N1	123.6°	132.9°
C4'	O4'	C1'	C2'	1.7°	11.3°
O4'	C4'	C3'	O3'	155.8°	84.7°
O4'	C4'	C5'	H5'1	173.6°	57.1°
O4'	C4'	C5'	H5'2	53.7°	178.0°
O4'	C4'	C3'	H3'	87.4°	155.2°
C4'	O4'	C1'	H1'	119.3°	110.3°
C3'	C2'	C1'	N1	98.6°	150.0°
C3'	C2'	C1'	O2'	119.3°	120.6°
C3'	C2'	C1'	H2'	122.6°	117.3°
C3'	C2'	C1'	O4'	22.3°	30.7°
C3'	C2'	O2'	H2'	123.2°	122.0°
C2'	C3'	O3'	H3'	120.9°	125.1°
C2'	C3'	C4'	H4'	89.7°	148.7°
C3'	C2'	C1'	H1'	144.6°	88.5°
C3'	C2'	O2'	HA	5.2°	167.7°
C2'	C3'	O3'	HB	76.5°	95.6°
O2	C2	N3	C4	179.8°	180.0°
O2	C2	N1	C6	178.3°	180.0°
O2	C2	N1	C1'	2.2°	0.0°
O2	C2	N3	H3	0.2°	0.1°
C2	N3	C4	C5	1.3°	0.0°
C2	N3	C4	H3	180.0°	180.0°
C2	N3	C4	O4	178.3°	179.9°
N3	C2	N1	C6	1.7°	0.0°
N3	C2	N1	C1'	177.8°	180.0°
C5	C4	N3	O4	179.6°	180.0°
C4	C5	C6	O5	178.8°	179.9°
C4	C5	C6	N1	0.0°	0.1°
C4	C5	O5	C7	0.8°	180.0°
C4	C5	C6	H6	180.0°	179.9°
C5	C4	N3	H3	178.7°	179.9°
N3	C4	C5	C6	1.3°	0.1°
N3	C4	C5	O5	179.8°	180.0°
O4	C4	C5	C6	178.2°	179.9°
O4	C4	C5	O5	0.6°	0.1°
O4	C4	N3	H3	1.7°	0.1°
C5	C6	N1	H6	180.0°	179.9°
C6	C5	O5	C7	177.9°	0.1°
C5	C6	N1	C1'	177.8°	180.0°
N1	C6	C5	O5	178.7°	180.0°
C6	N1	C1'	C2'	111.0°	85.6°
C6	N1	C1'	O4'	9.5°	32.3°
C6	N1	C1'	H1'	131.8°	150.0°
C8	C7	O5	C5	0.6°	179.3°
C8	C7	O5	H7C1	120.0°	119.3°
C8	C7	O5	H7C2	114.0°	120.8°
C7	C8	O8	O9	179.5°	180.0°
C8	C7	H7C1	H7C2	115.0°	121.2°
C7	C8	O8	H8	179.5°	180.0°
O5	C5	C6	H6	1.2°	0.1°
C5	O5	C7	H7C1	119.4°	60.0°
C5	O5	C7	H7C2	114.6°	59.9°
O5	C7	C8	O8	90.7°	178.6°
O5	C7	C8	O9	88.8°	1.3°
O5	C7	H7C1	H7C2	115.0°	119.2°
O8	C8	C7	H7C1	149.3°	59.9°
O8	C8	C7	H7C2	23.3°	61.3°
N1	C1'	C2'	O4'	120.9°	119.3°
N1	C1'	C2'	H1'	116.7°	121.4°
N1	C1'	O4'	H1'	117.1°	116.8°
N1	C1'	C2'	O2'	142.0°	89.4°
N1	C1'	C2'	H2'	24.0°	32.7°
C1'	N1	C6	H6	2.2°	0.1°
C2'	C1'	O4'	H1'	117.6°	121.6°
C1'	C2'	O2'	H2'	123.9°	123.5°
C1'	C2'	C3'	O3'	153.9°	77.4°
C1'	C2'	C3'	H3'	89.3°	161.1°
C1'	C2'	O2'	HA	118.2°	53.2°
O4'	C1'	C2'	O2'	97.0°	151.3°
C1'	O4'	C4'	H4'	100.9°	133.0°
O4'	C1'	C2'	H2'	144.9°	86.6°
O2'	C2'	C3'	O3'	35.4°	43.5°
O2'	C2'	C3'	H3'	152.2°	78.0°
O2'	C2'	C1'	H1'	25.3°	32.1°
O9	C8	C7	H7C1	31.2°	120.0°
O9	C8	C7	H7C2	157.2°	118.7°
O9	C8	O8	H8	0.0°	0.0°
O3'	C3'	C4'	H4'	32.7°	32.5°
O3'	C3'	C2'	H2'	82.7°	164.6°
H5'1	C5'	C4'	H4'	50.3°	174.1°
H5'2	C5'	C4'	H4'	69.6°	65.0°
H4'	C4'	C3'	H3'	149.5°	87.6°
H3'	C3'	C2'	H2'	34.1°	43.1°
H3'	C3'	O3'	HB	44.4°	139.3°
H1'	C1'	C2'	H2'	92.8°	154.2°
H2'	C2'	O2'	HA	117.9°	70.3°

Definition date:	2007-03-21
Last modified:	2011-06-04
Release status:	REL
Processing site:	RCSB