English 日本語简体中文繁體中文 한국어

✖

Menu

RCSB PDB PDBe BMRB Adv. Search Search help

Summary Geometry Related PDB entries

CLZ

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C1	N2	sing	1.33Å	1.34Å	Aromatic
C1	N5	sing	1.38Å	1.39Å
C1	C9	doub	1.42Å	1.47Å	Aromatic
N2	C3	doub	1.33Å	1.39Å	Aromatic
C3	N4	sing	1.32Å	1.39Å	Aromatic
C3	N6	sing	1.38Å	1.34Å
N4	C10	doub	1.34Å	1.41Å	Aromatic
N5	H51	sing	0.97Å	1.00Å
N5	H52	sing	0.97Å	1.00Å
N6	H61	sing	0.97Å	1.00Å
N6	H62	sing	0.97Å	1.00Å
C7	C8	doub	1.38Å	1.41Å	Aromatic
C7	C12	sing	1.40Å	1.42Å	Aromatic
C7	N13	sing	1.40Å	1.39Å
C8	C9	sing	1.40Å	1.43Å	Aromatic
C8	CL	sing	1.74Å	1.72Å
C9	C10	sing	1.42Å	1.42Å	Aromatic
C10	C11	sing	1.40Å	1.44Å	Aromatic
C11	C12	doub	1.36Å	1.37Å	Aromatic
C11	H11	sing	1.08Å	1.08Å
C12	H12	sing	1.08Å	1.08Å
N13	H131	sing	0.97Å	1.00Å
N13	H132	sing	0.97Å	1.00Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
N2	C1	N5	115.2°	120.8°
N2	C1	C9	120.7°	118.3°
C1	N2	C3	121.3°	121.4°
N5	C1	C9	123.8°	120.9°
C1	N5	H51	109.5°	120.0°
C1	N5	H52	109.5°	120.0°
C1	C9	C8	125.8°	121.9°
C1	C9	C10	116.3°	118.4°
N2	C3	N4	121.7°	122.8°
N2	C3	N6	119.8°	118.6°
N4	C3	N6	118.4°	118.6°
C3	N4	C10	118.3°	120.4°
C3	N6	H61	109.5°	120.0°
C3	N6	H62	109.4°	120.0°
N4	C10	C9	121.5°	118.7°
N4	C10	C11	117.2°	121.8°
H51	N5	H52	109.5°	120.0°
H61	N6	H62	109.5°	120.0°
C8	C7	C12	117.9°	120.5°
C8	C7	N13	120.9°	119.7°
C7	C8	C9	121.5°	119.4°
C7	C8	CL	115.5°	120.3°
C12	C7	N13	121.2°	119.8°
C7	C12	C11	123.4°	121.0°
C7	C12	H12	118.3°	119.5°
C7	N13	H131	109.5°	120.0°
C7	N13	H132	109.4°	120.0°
C9	C8	CL	122.9°	120.3°
C8	C9	C10	117.9°	119.7°
C9	C10	C11	121.2°	119.6°
C10	C11	C12	118.0°	119.8°
C10	C11	H11	121.0°	120.1°
C12	C11	H11	121.0°	120.1°
C11	C12	H12	118.3°	119.5°
H131	N13	H132	109.5°	120.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
N2	C1	N5	C9	173.9°	179.8°
C1	N2	C3	N4	2.3°	0.0°
C1	N2	C3	N6	178.9°	180.0°
N2	C1	N5	H51	0.0°	42.6°
N2	C1	N5	H52	120.0°	137.4°
N2	C1	C9	C8	175.5°	180.0°
N2	C1	C9	C10	4.6°	0.4°
N5	C1	N2	C3	179.2°	180.0°
C1	N5	H51	H52	120.0°	180.0°
N5	C1	C9	C8	2.0°	0.2°
N5	C1	C9	C10	178.2°	179.8°
C9	C1	N2	C3	5.2°	0.2°
C1	C9	C10	N4	1.3°	0.4°
C9	C1	N5	H51	173.9°	137.1°
C9	C1	N5	H52	66.1°	42.9°
C1	C9	C8	C7	179.7°	179.6°
C1	C9	C8	C10	179.8°	179.6°
C1	C9	C8	CL	1.8°	0.2°
C1	C9	C10	C11	179.5°	179.8°
N2	C3	N4	N6	178.9°	179.9°
N2	C3	N4	C10	1.1°	0.1°
N2	C3	N6	H61	0.0°	0.0°
N2	C3	N6	H62	120.0°	180.0°
N4	C3	N6	H61	178.8°	180.0°
N4	C3	N6	H62	58.8°	0.0°
C3	N4	C10	C9	1.4°	0.2°
C3	N4	C10	C11	176.8°	180.0°
N6	C3	N4	C10	177.8°	180.0°
C3	N6	H61	H62	120.0°	180.0°
N4	C10	C9	C8	178.8°	180.0°
N4	C10	C9	C11	178.2°	179.8°
N4	C10	C11	C12	178.8°	180.0°
N4	C10	C11	H11	1.2°	0.0°
C8	C7	C12	N13	179.9°	179.9°
C7	C8	C9	CL	177.8°	179.7°
C7	C8	C9	C10	0.5°	0.0°
C8	C7	C12	C11	0.2°	0.2°
C8	C7	C12	H12	179.8°	180.0°
C8	C7	N13	H131	180.0°	0.0°
C8	C7	N13	H132	60.0°	180.0°
C12	C7	C8	C9	0.3°	0.2°
C12	C7	C8	CL	178.3°	180.0°
C7	C12	C11	C10	0.3°	0.0°
C7	C12	C11	H12	180.0°	179.8°
C7	C12	C11	H11	179.7°	179.9°
C12	C7	N13	H131	0.1°	179.8°
C12	C7	N13	H132	119.9°	0.1°
N13	C7	C8	C9	179.7°	179.9°
N13	C7	C8	CL	1.7°	0.2°
N13	C7	C12	C11	179.8°	180.0°
N13	C7	C12	H12	0.2°	0.1°
C7	N13	H131	H132	120.0°	180.0°
C8	C9	C10	C11	0.7°	0.2°
CL	C8	C9	C10	178.3°	179.8°
C9	C10	C11	C12	0.6°	0.2°
C9	C10	C11	H11	179.4°	179.7°
C10	C11	C12	H11	180.0°	180.0°
C10	C11	C12	H12	179.7°	179.8°
H11	C11	C12	H12	0.3°	0.2°

224931

PDB entries from 2024-09-11

PDB statistics

PDBj update info

Contact PDBj

numon