CLD
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
N | CA | sing | 1.47Å | 1.46Å | |
N | H | sing | 1.01Å | 1.02Å | |
N | H2 | sing | 1.01Å | 1.02Å | |
CA | CB | sing | 1.53Å | 1.53Å | |
CA | C | sing | 1.51Å | 1.53Å | |
CA | HA | sing | 1.09Å | 1.12Å | |
CB | OB3 | sing | 1.43Å | 1.41Å | |
CB | HB2 | sing | 1.09Å | 1.12Å | |
CB | HB3 | sing | 1.09Å | 1.12Å | |
OB3 | B | sing | 1.37Å | 1.43Å | |
C | O | doub | 1.21Å | 1.23Å | |
C | OXT | sing | 1.34Å | 1.34Å | |
OXT | HXT | sing | 0.97Å | 0.95Å | |
N9 | C8 | sing | 1.46Å | 1.46Å | |
N9 | C10 | sing | 1.35Å | 1.33Å | |
N9 | HN9 | sing | 0.97Å | 1.02Å | |
C8 | C7 | sing | 1.53Å | 1.55Å | |
C8 | B | sing | 1.60Å | 1.64Å | |
C8 | H8 | sing | 1.09Å | 1.12Å | |
C7 | C1 | sing | 1.51Å | 1.52Å | |
C7 | H71 | sing | 1.09Å | 1.11Å | |
C7 | H72 | sing | 1.09Å | 1.11Å | |
C1 | C2 | doub | 1.38Å | 1.40Å | Aromatic |
C1 | C6 | sing | 1.38Å | 1.40Å | Aromatic |
C2 | C3 | sing | 1.38Å | 1.40Å | Aromatic |
C2 | HC2 | sing | 1.08Å | 1.10Å | |
C3 | C4 | doub | 1.38Å | 1.39Å | Aromatic |
C3 | H3 | sing | 1.08Å | 1.10Å | |
C6 | C5 | doub | 1.38Å | 1.40Å | Aromatic |
C6 | H6 | sing | 1.08Å | 1.10Å | |
C5 | C4 | sing | 1.38Å | 1.39Å | Aromatic |
C5 | H5 | sing | 1.08Å | 1.10Å | |
C4 | CL4 | sing | 1.74Å | 1.79Å | |
OB1 | B | sing | 1.37Å | 1.51Å | |
OB1 | HOB1 | sing | 0.97Å | 0.95Å | |
OB2 | B | sing | 1.37Å | 1.51Å | |
OB2 | HOB2 | sing | 0.97Å | 0.95Å | |
C10 | O10 | doub | 1.21Å | 1.23Å | |
C10 | C11 | sing | 1.51Å | 1.53Å | |
C11 | H111 | sing | 1.09Å | 1.12Å | |
C11 | H112 | sing | 1.09Å | 1.12Å | |
C11 | H113 | sing | 1.09Å | 1.11Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
CA | N | H | 111.0° | 106.7° |
CA | N | H2 | 111.6° | 106.8° |
N | CA | CB | 111.0° | 109.4° |
N | CA | C | 109.2° | 109.5° |
N | CA | HA | 108.2° | 109.5° |
H | N | H2 | 111.6° | 106.7° |
CB | CA | C | 108.3° | 109.5° |
CB | CA | HA | 109.1° | 109.5° |
CA | CB | OB3 | 112.8° | 109.5° |
CA | CB | HB2 | 111.0° | 109.5° |
CA | CB | HB3 | 111.0° | 109.5° |
C | CA | HA | 111.0° | 109.5° |
CA | C | O | 120.2° | 120.1° |
CA | C | OXT | 116.1° | 119.9° |
OB3 | CB | HB2 | 111.0° | 109.5° |
OB3 | CB | HB3 | 111.0° | 109.5° |
CB | OB3 | B | 109.2° | 106.8° |
HB2 | CB | HB3 | 99.4° | 109.4° |
OB3 | B | C8 | 97.6° | 109.4° |
OB3 | B | OB1 | 120.2° | 109.5° |
OB3 | B | OB2 | 120.2° | 109.4° |
O | C | OXT | 123.5° | 120.0° |
C | OXT | HXT | 116.1° | 120.0° |
C8 | N9 | C10 | 122.8° | 120.0° |
C8 | N9 | HN9 | 123.6° | 120.0° |
N9 | C8 | C7 | 118.4° | 109.5° |
N9 | C8 | B | 107.7° | 109.4° |
N9 | C8 | H8 | 104.1° | 109.5° |
C10 | N9 | HN9 | 113.6° | 120.0° |
N9 | C10 | O10 | 121.4° | 120.0° |
N9 | C10 | C11 | 118.6° | 120.0° |
C7 | C8 | B | 108.4° | 109.4° |
C7 | C8 | H8 | 103.4° | 109.5° |
C8 | C7 | C1 | 114.6° | 109.4° |
C8 | C7 | H71 | 110.3° | 109.5° |
C8 | C7 | H72 | 110.4° | 109.5° |
B | C8 | H8 | 115.0° | 109.5° |
C8 | B | OB1 | 99.8° | 109.5° |
C8 | B | OB2 | 97.7° | 109.5° |
C1 | C7 | H71 | 110.3° | 109.5° |
C1 | C7 | H72 | 110.3° | 109.5° |
C7 | C1 | C2 | 120.9° | 120.0° |
C7 | C1 | C6 | 121.2° | 120.0° |
H71 | C7 | H72 | 100.0° | 109.5° |
C2 | C1 | C6 | 117.9° | 120.0° |
C1 | C2 | C3 | 121.5° | 120.0° |
C1 | C2 | HC2 | 119.2° | 120.0° |
C1 | C6 | C5 | 121.2° | 120.0° |
C1 | C6 | H6 | 119.3° | 120.0° |
C3 | C2 | HC2 | 119.4° | 120.0° |
C2 | C3 | C4 | 119.5° | 120.0° |
C2 | C3 | H3 | 120.8° | 120.0° |
C4 | C3 | H3 | 119.7° | 120.0° |
C3 | C4 | C5 | 120.3° | 120.0° |
C3 | C4 | CL4 | 117.8° | 120.0° |
C5 | C6 | H6 | 119.4° | 120.0° |
C6 | C5 | C4 | 119.6° | 119.9° |
C6 | C5 | H5 | 120.5° | 120.0° |
C4 | C5 | H5 | 119.9° | 120.0° |
C5 | C4 | CL4 | 121.9° | 120.0° |
B | OB1 | HOB1 | 120.1° | 106.8° |
OB1 | B | OB2 | 113.4° | 109.5° |
B | OB2 | HOB2 | 120.2° | 106.8° |
O10 | C10 | C11 | 118.4° | 120.0° |
C10 | C11 | H111 | 118.7° | 109.5° |
C10 | C11 | H112 | 108.9° | 109.4° |
C10 | C11 | H113 | 108.9° | 109.4° |
H111 | C11 | H112 | 108.9° | 109.5° |
H111 | C11 | H113 | 108.9° | 109.5° |
H112 | C11 | H113 | 101.2° | 109.5° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
CA | N | H | H2 | 125.2° | 113.9° |
N | CA | CB | C | 119.9° | 120.0° |
N | CA | CB | HA | 119.2° | 120.0° |
N | CA | C | HA | 119.2° | 120.0° |
N | CA | CB | OB3 | 77.7° | 65.0° |
N | CA | CB | HB2 | 47.6° | 175.0° |
N | CA | CB | HB3 | 157.1° | 55.0° |
N | CA | C | O | 152.2° | 20.0° |
N | CA | C | OXT | 31.1° | 160.0° |
H | N | CA | CB | 180.0° | 173.8° |
H | N | CA | C | 60.7° | 53.8° |
H | N | CA | HA | 60.3° | 66.2° |
H2 | N | CA | CB | 54.8° | 60.0° |
H2 | N | CA | C | 174.1° | 60.0° |
H2 | N | CA | HA | 64.9° | 180.0° |
CB | CA | C | HA | 119.7° | 120.0° |
CA | CB | OB3 | HB2 | 125.3° | 120.0° |
CA | CB | OB3 | HB3 | 125.2° | 120.0° |
CA | CB | HB2 | HB3 | 116.9° | 120.0° |
CA | CB | OB3 | B | 111.2° | 180.0° |
CB | CA | C | O | 86.7° | 100.0° |
CB | CA | C | OXT | 89.9° | 80.0° |
C | CA | CB | OB3 | 162.4° | 175.1° |
C | CA | CB | HB2 | 72.3° | 55.0° |
C | CA | CB | HB3 | 37.2° | 64.9° |
CA | C | O | OXT | 176.4° | 179.9° |
CA | C | OXT | HXT | 180.0° | 180.0° |
HA | CA | CB | OB3 | 41.5° | 55.0° |
HA | CA | CB | HB2 | 166.7° | 65.1° |
HA | CA | CB | HB3 | 83.7° | 175.0° |
HA | CA | C | O | 33.0° | 140.0° |
HA | CA | C | OXT | 150.3° | 40.0° |
OB3 | CB | HB2 | HB3 | 116.9° | 120.0° |
CB | OB3 | B | C8 | 160.0° | 180.0° |
CB | OB3 | B | OB1 | 54.0° | 60.0° |
CB | OB3 | B | OB2 | 96.5° | 60.1° |
HB2 | CB | OB3 | B | 14.1° | 60.0° |
HB3 | CB | OB3 | B | 123.6° | 60.0° |
OB3 | B | C8 | N9 | 141.0° | 48.7° |
OB3 | B | C8 | C7 | 89.8° | 168.6° |
OB3 | B | C8 | OB1 | 122.5° | 120.0° |
OB3 | B | C8 | OB2 | 122.0° | 119.9° |
OB3 | B | C8 | H8 | 25.4° | 71.3° |
OB3 | B | OB1 | OB2 | 152.3° | 120.0° |
OB3 | B | OB1 | HOB1 | 180.0° | 55.0° |
OB3 | B | OB2 | HOB2 | 179.9° | 60.0° |
O | C | OXT | HXT | 3.4° | 0.1° |
C8 | N9 | C10 | HN9 | 180.0° | 179.9° |
N9 | C8 | C7 | B | 123.0° | 120.0° |
N9 | C8 | C7 | H8 | 114.5° | 120.0° |
N9 | C8 | B | H8 | 115.6° | 120.0° |
N9 | C8 | C7 | C1 | 52.0° | 180.0° |
N9 | C8 | C7 | H71 | 177.2° | 60.0° |
N9 | C8 | C7 | H72 | 73.2° | 60.0° |
N9 | C8 | B | OB1 | 96.5° | 71.3° |
N9 | C8 | B | OB2 | 19.0° | 168.6° |
C8 | N9 | C10 | O10 | 80.3° | 5.2° |
C8 | N9 | C10 | C11 | 113.8° | 174.8° |
C10 | N9 | C8 | C7 | 128.1° | 136.0° |
C10 | N9 | C8 | B | 108.6° | 104.0° |
C10 | N9 | C8 | H8 | 14.0° | 16.0° |
N9 | C10 | O10 | C11 | 165.9° | 180.0° |
N9 | C10 | C11 | H111 | 180.0° | 180.0° |
N9 | C10 | C11 | H112 | 54.8° | 60.1° |
N9 | C10 | C11 | H113 | 54.7° | 60.0° |
HN9 | N9 | C8 | C7 | 51.9° | 43.9° |
HN9 | N9 | C8 | B | 71.4° | 76.0° |
HN9 | N9 | C8 | H8 | 166.0° | 164.0° |
HN9 | N9 | C10 | O10 | 99.7° | 174.9° |
HN9 | N9 | C10 | C11 | 66.1° | 5.1° |
C7 | C8 | B | H8 | 115.2° | 120.0° |
C8 | C7 | C1 | H71 | 125.2° | 120.0° |
C8 | C7 | C1 | H72 | 125.2° | 120.0° |
C8 | C7 | H71 | H72 | 116.2° | 120.0° |
C8 | C7 | C1 | C2 | 67.2° | 90.0° |
C8 | C7 | C1 | C6 | 112.2° | 90.3° |
C7 | C8 | B | OB1 | 32.7° | 48.6° |
C7 | C8 | B | OB2 | 148.2° | 71.4° |
B | C8 | C7 | C1 | 175.0° | 60.0° |
B | C8 | C7 | H71 | 59.8° | 60.0° |
B | C8 | C7 | H72 | 49.8° | 180.0° |
C8 | B | OB1 | OB2 | 102.9° | 120.0° |
C8 | B | OB1 | HOB1 | 75.2° | 65.0° |
C8 | B | OB2 | HOB2 | 76.5° | 60.0° |
H8 | C8 | C7 | C1 | 62.5° | 60.0° |
H8 | C8 | C7 | H71 | 62.7° | NaN° |
H8 | C8 | C7 | H72 | 172.3° | 60.0° |
H8 | C8 | B | OB1 | 147.9° | 168.7° |
H8 | C8 | B | OB2 | 96.6° | 48.6° |
C1 | C7 | H71 | H72 | 116.2° | 120.0° |
C7 | C1 | C2 | C6 | 179.4° | 179.7° |
C7 | C1 | C2 | C3 | 179.1° | 180.0° |
C7 | C1 | C2 | HC2 | 0.9° | 0.0° |
C7 | C1 | C6 | C5 | 179.2° | 179.8° |
C7 | C1 | C6 | H6 | 0.8° | 0.3° |
H71 | C7 | C1 | C2 | 167.6° | 30.0° |
H71 | C7 | C1 | C6 | 13.1° | 149.7° |
H72 | C7 | C1 | C2 | 58.1° | 150.0° |
H72 | C7 | C1 | C6 | 122.6° | 29.7° |
C1 | C2 | C3 | HC2 | 180.0° | 180.0° |
C1 | C2 | C3 | C4 | 0.2° | 0.0° |
C1 | C2 | C3 | H3 | 179.8° | 179.9° |
C2 | C1 | C6 | C5 | 0.1° | 0.5° |
C2 | C1 | C6 | H6 | 179.9° | 180.0° |
C6 | C1 | C2 | C3 | 0.3° | 0.3° |
C6 | C1 | C2 | HC2 | 179.7° | 179.7° |
C1 | C6 | C5 | H6 | 180.0° | 179.5° |
C1 | C6 | C5 | C4 | 0.1° | 0.5° |
C1 | C6 | C5 | H5 | 179.8° | 179.7° |
C2 | C3 | C4 | H3 | 180.0° | 179.9° |
C2 | C3 | C4 | C5 | 0.1° | 0.0° |
C2 | C3 | C4 | CL4 | 179.7° | 180.0° |
HC2 | C2 | C3 | C4 | 179.8° | 180.0° |
HC2 | C2 | C3 | H3 | 0.2° | 0.1° |
C3 | C4 | C5 | C6 | 0.2° | 0.2° |
C3 | C4 | C5 | CL4 | 179.7° | 180.0° |
C3 | C4 | C5 | H5 | 179.7° | 180.0° |
H3 | C3 | C4 | C5 | 179.9° | 179.9° |
H3 | C3 | C4 | CL4 | 0.3° | 0.1° |
C6 | C5 | C4 | H5 | 180.0° | 179.8° |
C6 | C5 | C4 | CL4 | 179.5° | 179.7° |
H6 | C6 | C5 | C4 | 179.9° | 180.0° |
H6 | C6 | C5 | H5 | 0.2° | 0.2° |
H5 | C5 | C4 | CL4 | 0.5° | 0.0° |
OB1 | B | OB2 | HOB2 | 27.8° | 180.0° |
HOB1 | OB1 | B | OB2 | 27.7° | 175.0° |
O10 | C10 | C11 | H111 | 13.8° | 0.0° |
O10 | C10 | C11 | H112 | 139.0° | 120.0° |
O10 | C10 | C11 | H113 | 111.5° | 120.0° |
C10 | C11 | H111 | H112 | 125.3° | 119.9° |
C10 | C11 | H111 | H113 | 125.3° | 120.0° |
C10 | C11 | H112 | H113 | 114.7° | 120.0° |
H111 | C11 | H112 | H113 | 114.6° | 120.1° |