CJB
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
N1 | C2A | sing | 1.35Å | 1.40Å | |
N1 | C6A | sing | 1.37Å | 1.41Å | |
N1 | C1 | sing | 1.46Å | 1.49Å | |
O2A | C2A | doub | 1.22Å | 1.24Å | |
C2A | N3 | sing | 1.35Å | 1.40Å | |
N3 | C4A | sing | 1.35Å | 1.40Å | |
C4A | O4A | doub | 1.22Å | 1.23Å | |
C4A | C5A | sing | 1.42Å | 1.40Å | |
C5A | C6A | doub | 1.35Å | 1.40Å | |
C1 | O5 | sing | 1.43Å | 1.45Å | |
C1 | C2 | sing | 1.53Å | 1.55Å | |
O5 | C5 | sing | 1.43Å | 1.45Å | |
C5 | C6 | sing | 1.53Å | 1.53Å | |
C5 | C4 | sing | 1.53Å | 1.55Å | |
C6 | O6 | sing | 1.43Å | 1.43Å | |
C4 | O4 | sing | 1.43Å | 1.43Å | |
C4 | C3 | sing | 1.53Å | 1.54Å | |
C3 | O3 | sing | 1.43Å | 1.43Å | |
C3 | C2 | sing | 1.53Å | 1.54Å | |
C2 | O2 | sing | 1.43Å | 1.44Å | |
N3 | HN3 | sing | 0.97Å | 1.00Å | |
C5A | H5A | sing | 1.08Å | 1.08Å | |
C6A | H6 | sing | 1.08Å | 1.08Å | |
C1 | H1 | sing | 1.09Å | 1.10Å | |
C5 | H5 | sing | 1.09Å | 1.10Å | |
C6 | H61 | sing | 1.09Å | 1.10Å | |
C6 | H62 | sing | 1.09Å | 1.10Å | |
O6 | HO6 | sing | 0.97Å | 0.95Å | |
C4 | H4 | sing | 1.09Å | 1.10Å | |
O4 | HO4 | sing | 0.97Å | 0.95Å | |
C3 | H3 | sing | 1.09Å | 1.10Å | |
O3 | HO3 | sing | 0.97Å | 0.95Å | |
C2 | H2 | sing | 1.09Å | 1.10Å | |
O2 | HO2 | sing | 0.97Å | 0.95Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
C2A | N1 | C6A | 120.1° | 120.6° |
C2A | N1 | C1 | 118.1° | 119.7° |
N1 | C2A | O2A | 120.3° | 119.5° |
N1 | C2A | N3 | 118.9° | 120.9° |
C6A | N1 | C1 | 121.8° | 119.6° |
N1 | C6A | C5A | 120.9° | 119.6° |
N1 | C6A | H6 | 119.6° | 120.2° |
N1 | C1 | O5 | 109.9° | 109.5° |
N1 | C1 | C2 | 114.2° | 109.5° |
N1 | C1 | H1 | 107.7° | 109.5° |
O2A | C2A | N3 | 120.8° | 119.5° |
C2A | N3 | C4A | 120.7° | 120.3° |
C2A | N3 | HN3 | 119.6° | 119.8° |
N3 | C4A | O4A | 118.6° | 120.4° |
N3 | C4A | C5A | 120.8° | 119.4° |
C4A | N3 | HN3 | 119.7° | 119.9° |
O4A | C4A | C5A | 120.7° | 120.3° |
C4A | C5A | C6A | 118.5° | 119.1° |
C4A | C5A | H5A | 120.7° | 120.5° |
C6A | C5A | H5A | 120.7° | 120.4° |
C5A | C6A | H6 | 119.5° | 120.2° |
O5 | C1 | C2 | 109.6° | 109.4° |
C1 | O5 | C5 | 109.3° | 114.1° |
O5 | C1 | H1 | 108.2° | 109.5° |
C1 | C2 | C3 | 110.2° | 109.2° |
C1 | C2 | O2 | 110.7° | 109.5° |
C2 | C1 | H1 | 107.0° | 109.5° |
C1 | C2 | H2 | 107.7° | 109.5° |
O5 | C5 | C6 | 107.5° | 109.5° |
O5 | C5 | C4 | 112.4° | 109.4° |
O5 | C5 | H5 | 108.8° | 109.5° |
C6 | C5 | C4 | 112.6° | 109.5° |
C5 | C6 | O6 | 109.8° | 109.5° |
C6 | C5 | H5 | 107.8° | 109.5° |
C5 | C6 | H61 | 109.4° | 109.5° |
C5 | C6 | H62 | 109.4° | 109.4° |
C5 | C4 | O4 | 109.8° | 109.5° |
C5 | C4 | C3 | 112.0° | 109.1° |
C4 | C5 | H5 | 107.6° | 109.5° |
C5 | C4 | H4 | 107.8° | 109.5° |
O6 | C6 | H61 | 109.4° | 109.5° |
O6 | C6 | H62 | 109.4° | 109.5° |
C6 | O6 | HO6 | 109.5° | 114.0° |
O4 | C4 | C3 | 110.0° | 109.5° |
O4 | C4 | H4 | 109.3° | 109.5° |
C4 | O4 | HO4 | 109.5° | 114.0° |
C4 | C3 | O3 | 109.6° | 109.5° |
C4 | C3 | C2 | 110.8° | 109.0° |
C3 | C4 | H4 | 107.9° | 109.6° |
C4 | C3 | H3 | 108.5° | 109.6° |
O3 | C3 | C2 | 109.7° | 109.5° |
O3 | C3 | H3 | 109.9° | 109.6° |
C3 | O3 | HO3 | 109.5° | 114.0° |
C3 | C2 | O2 | 111.3° | 109.5° |
C2 | C3 | H3 | 108.4° | 109.6° |
C3 | C2 | H2 | 107.7° | 109.5° |
O2 | C2 | H2 | 109.1° | 109.6° |
C2 | O2 | HO2 | 109.5° | 114.0° |
H61 | C6 | H62 | 109.5° | 109.4° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
C2A | N1 | C6A | C1 | 179.2° | 179.7° |
N1 | C2A | O2A | N3 | 179.3° | 180.0° |
N1 | C2A | N3 | C4A | 0.3° | 0.0° |
C2A | N1 | C6A | C5A | 0.8° | 0.0° |
C2A | N1 | C1 | O5 | 99.8° | 125.0° |
C2A | N1 | C1 | C2 | 136.5° | 115.0° |
N1 | C2A | N3 | HN3 | 179.7° | 180.0° |
C2A | N1 | C6A | H6 | 179.2° | 180.0° |
C2A | N1 | C1 | H1 | 17.8° | 5.0° |
C6A | N1 | C2A | O2A | 179.8° | 180.0° |
C6A | N1 | C2A | N3 | 0.9° | 0.0° |
N1 | C6A | C5A | C4A | 0.0° | 0.0° |
N1 | C6A | C5A | H6 | 180.0° | 180.0° |
C6A | N1 | C1 | O5 | 79.4° | 54.7° |
C6A | N1 | C1 | C2 | 44.2° | 65.2° |
N1 | C6A | C5A | H5A | 180.0° | 179.9° |
C6A | N1 | C1 | H1 | 162.9° | 174.7° |
C1 | N1 | C2A | O2A | 0.6° | 0.3° |
C1 | N1 | C2A | N3 | 179.8° | 179.7° |
C1 | N1 | C6A | C5A | 180.0° | 179.7° |
N1 | C1 | O5 | C2 | 126.3° | 120.0° |
N1 | C1 | O5 | H1 | 117.4° | 120.0° |
N1 | C1 | C2 | H1 | 119.1° | 120.0° |
N1 | C1 | O5 | C5 | 167.6° | 178.8° |
N1 | C1 | C2 | C3 | 174.7° | 177.6° |
N1 | C1 | C2 | O2 | 51.2° | 62.5° |
C1 | N1 | C6A | H6 | 0.0° | 0.3° |
N1 | C1 | C2 | H2 | 68.0° | 57.7° |
O2A | C2A | N3 | C4A | 179.5° | 180.0° |
O2A | C2A | N3 | HN3 | 0.5° | 0.0° |
C2A | N3 | C4A | HN3 | 180.0° | 180.0° |
C2A | N3 | C4A | O4A | 179.7° | 179.9° |
C2A | N3 | C4A | C5A | 0.5° | 0.0° |
N3 | C4A | O4A | C5A | 179.7° | 179.9° |
N3 | C4A | C5A | C6A | 0.6° | 0.0° |
N3 | C4A | C5A | H5A | 179.4° | 180.0° |
O4A | C4A | C5A | C6A | 179.6° | 180.0° |
O4A | C4A | N3 | HN3 | 0.3° | 0.0° |
O4A | C4A | C5A | H5A | 0.4° | 0.1° |
C4A | C5A | C6A | H5A | 180.0° | 179.9° |
C5A | C4A | N3 | HN3 | 179.5° | 179.9° |
C4A | C5A | C6A | H6 | 180.0° | 180.0° |
O5 | C1 | C2 | H1 | 117.1° | 120.0° |
C1 | O5 | C5 | C6 | 174.3° | 178.8° |
C1 | O5 | C5 | C4 | 61.2° | 61.2° |
O5 | C1 | C2 | C3 | 61.4° | 57.6° |
O5 | C1 | C2 | O2 | 175.0° | 177.5° |
C1 | O5 | C5 | H5 | 57.9° | 58.8° |
O5 | C1 | C2 | H2 | 55.8° | 62.3° |
C2 | C1 | O5 | C5 | 66.0° | 61.2° |
C1 | C2 | C3 | C4 | 50.9° | 57.0° |
C1 | C2 | C3 | O3 | 172.0° | 176.8° |
C1 | C2 | C3 | O2 | 123.2° | 119.9° |
C1 | C2 | C3 | H2 | 117.2° | 119.9° |
C1 | C2 | O2 | H2 | 118.3° | 120.2° |
C1 | C2 | C3 | H3 | 68.0° | 62.9° |
C1 | C2 | O2 | HO2 | 180.0° | 179.9° |
O5 | C5 | C6 | C4 | 124.4° | 119.9° |
O5 | C5 | C6 | H5 | 117.2° | 120.1° |
O5 | C5 | C4 | H5 | 119.8° | 120.0° |
O5 | C5 | C6 | O6 | 70.9° | 65.0° |
O5 | C5 | C4 | O4 | 173.9° | 177.5° |
O5 | C5 | C4 | C3 | 51.4° | 57.6° |
C5 | O5 | C1 | H1 | 50.3° | 58.8° |
O5 | C5 | C6 | H61 | 49.2° | 175.0° |
O5 | C5 | C6 | H62 | 169.1° | 55.0° |
O5 | C5 | C4 | H4 | 67.2° | 62.4° |
C6 | C5 | C4 | H5 | 118.5° | 120.0° |
C5 | C6 | O6 | H61 | 120.0° | 120.0° |
C5 | C6 | O6 | H62 | 120.0° | 120.0° |
C6 | C5 | C4 | O4 | 64.5° | 62.5° |
C6 | C5 | C4 | C3 | 173.1° | 177.6° |
C5 | C6 | H61 | H62 | 119.8° | 120.0° |
C5 | C6 | O6 | HO6 | 180.0° | 180.0° |
C6 | C5 | C4 | H4 | 54.5° | 57.6° |
C4 | C5 | C6 | O6 | 53.5° | 175.1° |
C5 | C4 | O4 | C3 | 123.7° | 119.7° |
C5 | C4 | O4 | H4 | 118.0° | 120.1° |
C5 | C4 | C3 | H4 | 118.5° | 119.9° |
C5 | C4 | C3 | O3 | 167.1° | 176.8° |
C5 | C4 | C3 | C2 | 45.9° | 57.0° |
C4 | C5 | C6 | H61 | 173.6° | 55.0° |
C4 | C5 | C6 | H62 | 66.5° | 64.9° |
C5 | C4 | O4 | HO4 | 180.0° | 180.0° |
C5 | C4 | C3 | H3 | 72.9° | 63.0° |
O6 | C6 | C5 | H5 | 172.0° | 55.0° |
O6 | C6 | H61 | H62 | 119.9° | 120.0° |
O4 | C4 | C3 | H4 | 119.2° | 120.2° |
O4 | C4 | C3 | O3 | 70.5° | 63.3° |
O4 | C4 | C3 | C2 | 168.3° | 176.9° |
O4 | C4 | C5 | H5 | 54.1° | 57.5° |
O4 | C4 | C3 | H3 | 49.5° | 56.9° |
C4 | C3 | O3 | C2 | 121.8° | 119.5° |
C4 | C3 | O3 | H3 | 119.1° | 120.2° |
C4 | C3 | C2 | H3 | 118.9° | 120.0° |
C4 | C3 | C2 | O2 | 174.1° | 176.9° |
C3 | C4 | C5 | H5 | 68.4° | 62.4° |
C3 | C4 | O4 | HO4 | 56.4° | 60.4° |
C4 | C3 | O3 | HO3 | 180.0° | 60.1° |
C4 | C3 | C2 | H2 | 66.3° | 62.9° |
O3 | C3 | C2 | H3 | 120.0° | 120.3° |
O3 | C3 | C2 | O2 | 64.8° | 63.3° |
O3 | C3 | C4 | H4 | 48.7° | 56.9° |
O3 | C3 | C2 | H2 | 54.8° | 56.9° |
C3 | C2 | O2 | H2 | 118.8° | 120.2° |
C3 | C2 | C1 | H1 | 55.6° | 62.3° |
C2 | C3 | C4 | H4 | 72.6° | 62.9° |
C2 | C3 | O3 | HO3 | 58.2° | 179.6° |
C3 | C2 | O2 | HO2 | 57.1° | 60.4° |
O2 | C2 | C1 | H1 | 67.9° | 57.5° |
O2 | C2 | C3 | H3 | 55.2° | 57.0° |
H5A | C5A | C6A | H6 | 0.0° | 0.1° |
H1 | C1 | C2 | H2 | 172.9° | 177.7° |
H5 | C5 | C6 | H61 | 68.0° | 65.0° |
H5 | C5 | C6 | H62 | 51.9° | 175.1° |
H5 | C5 | C4 | H4 | 173.0° | 177.6° |
H61 | C6 | O6 | HO6 | 60.0° | 60.0° |
H62 | C6 | O6 | HO6 | 60.0° | 60.0° |
H4 | C4 | O4 | HO4 | 62.0° | 59.9° |
H4 | C4 | C3 | H3 | 168.6° | 177.1° |
H3 | C3 | O3 | HO3 | 60.9° | 60.1° |
H3 | C3 | C2 | H2 | 174.8° | 177.2° |
H2 | C2 | O2 | HO2 | 61.7° | 59.8° |