English 日本語简体中文繁體中文 한국어

✖

Menu

RCSB PDB PDBe BMRB Adv. Search Search help

Summary Geometry Related PDB entries

CIT

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C1	O1	doub	1.21Å	1.10Å
C1	O2	sing	1.34Å	1.19Å
C1	C2	sing	1.51Å	1.55Å
O2	HO2	sing	0.97Å	0.95Å
C2	C3	sing	1.53Å	1.56Å
C2	H21	sing	1.09Å	1.12Å
C2	H22	sing	1.09Å	1.11Å
C3	O7	sing	1.43Å	1.46Å
C3	C4	sing	1.53Å	1.55Å
C3	C6	sing	1.51Å	1.51Å
O7	HO7	sing	0.97Å	0.95Å
C4	C5	sing	1.51Å	1.51Å
C4	H41	sing	1.09Å	1.11Å
C4	H42	sing	1.09Å	1.11Å
C5	O3	doub	1.21Å	1.33Å
C5	O4	sing	1.34Å	1.20Å
O4	HO4	sing	0.97Å	0.95Å
C6	O5	doub	1.21Å	1.28Å
C6	O6	sing	1.34Å	1.27Å
O6	HO6	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O1	C1	O2	129.6°	120.0°
O1	C1	C2	120.5°	120.0°
O2	C1	C2	109.8°	120.0°
C1	O2	HO2	129.6°	120.0°
C1	C2	C3	120.4°	109.5°
C1	C2	H21	108.3°	109.4°
C1	C2	H22	108.3°	109.5°
C3	C2	H21	108.3°	109.5°
C3	C2	H22	108.3°	109.5°
C2	C3	O7	111.5°	109.4°
C2	C3	C4	108.5°	109.5°
C2	C3	C6	110.0°	109.5°
H21	C2	H22	101.6°	109.4°
O7	C3	C4	104.4°	109.4°
O7	C3	C6	110.0°	109.4°
C3	O7	HO7	111.5°	106.8°
C4	C3	C6	112.4°	109.5°
C3	C4	C5	112.1°	109.5°
C3	C4	H41	111.3°	109.5°
C3	C4	H42	111.3°	109.5°
C3	C6	O5	116.4°	120.0°
C3	C6	O6	118.3°	119.9°
C5	C4	H41	111.2°	109.4°
C5	C4	H42	111.2°	109.5°
C4	C5	O3	114.2°	120.0°
C4	C5	O4	126.3°	120.0°
H41	C4	H42	99.1°	109.4°
O3	C5	O4	119.3°	120.0°
C5	O4	HO4	126.3°	120.0°
O5	C6	O6	125.2°	120.0°
C6	O6	HO6	118.3°	120.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O1	C1	O2	C2	176.2°	179.9°
O1	C1	O2	HO2	179.9°	0.1°
O1	C1	C2	C3	95.0°	0.0°
O1	C1	C2	H21	30.3°	120.0°
O1	C1	C2	H22	139.8°	120.0°
O2	C1	C2	C3	88.4°	179.9°
O2	C1	C2	H21	146.3°	60.1°
O2	C1	C2	H22	36.9°	59.9°
C2	C1	O2	HO2	3.8°	180.0°
C1	C2	C3	H21	125.3°	120.0°
C1	C2	C3	H22	125.3°	120.1°
C1	C2	H21	H22	114.0°	120.0°
C1	C2	C3	O7	57.6°	60.0°
C1	C2	C3	C4	56.9°	179.9°
C1	C2	C3	C6	179.8°	60.0°
C3	C2	H21	H22	113.9°	120.0°
C2	C3	O7	C4	117.0°	120.0°
C2	C3	O7	C6	122.2°	120.0°
C2	C3	C4	C6	121.8°	120.1°
C2	C3	O7	HO7	179.9°	60.0°
C2	C3	C4	C5	172.7°	179.9°
C2	C3	C4	H41	62.1°	60.0°
C2	C3	C4	H42	47.4°	60.0°
C2	C3	C6	O5	71.8°	120.0°
C2	C3	C6	O6	105.6°	60.0°
H21	C2	C3	O7	177.1°	60.0°
H21	C2	C3	C4	68.4°	60.0°
H21	C2	C3	C6	54.9°	180.0°
H22	C2	C3	O7	67.7°	180.0°
H22	C2	C3	C4	177.8°	60.0°
H22	C2	C3	C6	54.5°	60.1°
O7	C3	C4	C6	119.1°	120.0°
O7	C3	C4	C5	68.3°	60.0°
O7	C3	C4	H41	56.9°	60.0°
O7	C3	C4	H42	166.5°	180.0°
O7	C3	C6	O5	165.1°	0.0°
O7	C3	C6	O6	17.5°	180.0°
C4	C3	O7	HO7	62.9°	60.0°
C3	C4	C5	H41	125.3°	120.0°
C3	C4	C5	H42	125.3°	120.0°
C3	C4	H41	H42	117.2°	120.0°
C3	C4	C5	O3	173.2°	0.0°
C3	C4	C5	O4	11.9°	179.9°
C4	C3	C6	O5	49.2°	120.0°
C4	C3	C6	O6	133.4°	60.0°
C6	C3	O7	HO7	57.8°	180.0°
C6	C3	C4	C5	50.8°	60.0°
C6	C3	C4	H41	176.1°	180.0°
C6	C3	C4	H42	74.4°	60.1°
C3	C6	O5	O6	177.2°	180.0°
C3	C6	O6	HO6	179.9°	180.0°
C5	C4	H41	H42	117.1°	120.0°
C4	C5	O3	O4	175.2°	179.9°
C4	C5	O4	HO4	180.0°	180.0°
H41	C4	C5	O3	47.9°	120.0°
H41	C4	C5	O4	137.2°	60.1°
H42	C4	C5	O3	61.5°	120.0°
H42	C4	C5	O4	113.3°	59.9°
O3	C5	O4	HO4	5.4°	0.1°
O5	C6	O6	HO6	3.0°	0.0°

238268

PDB entries from 2025-07-02

PDB statistics

PDBj update info

Contact PDBj

numon