CH
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| OP3 | P | sing | 1.48Å | 1.61Å | |
| OP3 | HOP3 | sing | 5.00Å | 0.95Å | |
| P | OP1 | doub | 1.61Å | 1.48Å | |
| P | OP2 | sing | 1.61Å | 1.47Å | |
| P | O5' | sing | 1.61Å | 1.64Å | |
| OP2 | HOP2 | sing | 0.97Å | 0.95Å | |
| O5' | C5' | sing | 1.43Å | 1.45Å | |
| C5' | C4' | sing | 1.53Å | 1.52Å | |
| C5' | H5' | sing | 1.09Å | 1.09Å | |
| C5' | H5'' | sing | 1.09Å | 1.09Å | |
| C4' | O4' | sing | 1.44Å | 1.42Å | |
| C4' | C3' | sing | 1.54Å | 1.53Å | |
| C4' | H4' | sing | 1.09Å | 1.09Å | |
| O4' | C1' | sing | 1.44Å | 1.41Å | |
| C3' | O3' | sing | 1.43Å | 1.44Å | |
| C3' | C2' | sing | 1.55Å | 1.53Å | |
| C3' | H3' | sing | 1.09Å | 1.09Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| C2' | O2' | sing | 1.43Å | 1.42Å | |
| C2' | C1' | sing | 1.54Å | 1.53Å | |
| C2' | H2' | sing | 1.09Å | 1.09Å | |
| O2' | HO2' | sing | 0.97Å | 0.96Å | |
| C1' | N1 | sing | 1.46Å | 1.49Å | |
| C1' | H1' | sing | 1.09Å | 1.09Å | |
| N1 | C2 | sing | 1.33Å | 1.40Å | |
| N1 | C6 | doub | 1.32Å | 1.39Å | |
| C2 | O2 | doub | 1.22Å | 1.23Å | |
| C2 | N3 | sing | 1.35Å | 1.38Å | |
| N3 | C4 | sing | 1.37Å | 1.37Å | |
| N3 | HN3 | sing | 0.97Å | 1.01Å | |
| C4 | N4 | sing | 1.37Å | 1.33Å | |
| C4 | C5 | doub | 1.39Å | 1.43Å | |
| N4 | H41 | sing | 0.97Å | 1.01Å | |
| N4 | H42 | sing | 0.97Å | 1.01Å | |
| C5 | C6 | sing | 1.39Å | 1.35Å | |
| C5 | H5 | sing | 1.08Å | 1.09Å | |
| C6 | H6 | sing | 1.08Å | 1.10Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| P | OP3 | HOP3 | 107.7° | 50.4° |
| OP3 | P | OP1 | 107.7° | 109.5° |
| OP3 | P | OP2 | 107.8° | 109.4° |
| OP3 | P | O5' | 103.4° | 109.4° |
| OP1 | P | OP2 | 118.3° | 109.5° |
| OP1 | P | O5' | 108.4° | 109.5° |
| OP2 | P | O5' | 110.1° | 109.5° |
| P | OP2 | HOP2 | 107.8° | 106.8° |
| P | O5' | C5' | 125.4° | 106.8° |
| O5' | C5' | C4' | 112.2° | 109.5° |
| O5' | C5' | H5' | 110.2° | 109.5° |
| O5' | C5' | H5'' | 107.5° | 109.5° |
| C4' | C5' | H5' | 109.6° | 109.5° |
| C4' | C5' | H5'' | 108.8° | 109.5° |
| C5' | C4' | O4' | 106.3° | 110.4° |
| C5' | C4' | C3' | 116.6° | 110.5° |
| C5' | C4' | H4' | 109.0° | 110.4° |
| H5' | C5' | H5'' | 108.4° | 109.4° |
| O4' | C4' | C3' | 105.7° | 104.8° |
| O4' | C4' | H4' | 109.5° | 110.4° |
| C4' | O4' | C1' | 110.4° | 105.3° |
| C3' | C4' | H4' | 109.4° | 110.4° |
| C4' | C3' | O3' | 110.0° | 110.5° |
| C4' | C3' | C2' | 98.8° | 104.1° |
| C4' | C3' | H3' | 111.0° | 110.6° |
| O4' | C1' | C2' | 103.9° | 104.9° |
| O4' | C1' | N1 | 109.9° | 110.4° |
| O4' | C1' | H1' | 99.6° | 110.3° |
| O3' | C3' | C2' | 112.2° | 110.5° |
| O3' | C3' | H3' | 109.9° | 110.5° |
| C3' | O3' | HO3' | 110.0° | 106.8° |
| C2' | C3' | H3' | 114.4° | 110.6° |
| C3' | C2' | O2' | 116.0° | 110.5° |
| C3' | C2' | C1' | 100.1° | 104.0° |
| C3' | C2' | H2' | 107.2° | 110.5° |
| O2' | C2' | C1' | 111.7° | 110.8° |
| O2' | C2' | H2' | 109.6° | 110.5° |
| C2' | O2' | HO2' | 105.9° | 106.8° |
| C1' | C2' | H2' | 111.9° | 110.4° |
| C2' | C1' | N1 | 117.0° | 110.4° |
| C2' | C1' | H1' | 112.9° | 110.4° |
| N1 | C1' | H1' | 111.7° | 110.4° |
| C1' | N1 | C2 | 116.5° | 119.4° |
| C1' | N1 | C6 | 121.8° | 119.4° |
| C2 | N1 | C6 | 121.7° | 121.2° |
| N1 | C2 | O2 | 123.3° | 119.4° |
| N1 | C2 | N3 | 115.9° | 121.2° |
| N1 | C6 | C5 | 122.1° | 120.0° |
| N1 | C6 | H6 | 120.5° | 120.0° |
| O2 | C2 | N3 | 120.8° | 119.4° |
| C2 | N3 | C4 | 123.3° | 120.0° |
| C2 | N3 | HN3 | 116.7° | 120.0° |
| C4 | N3 | HN3 | 120.0° | 120.0° |
| N3 | C4 | N4 | 118.3° | 120.6° |
| N3 | C4 | C5 | 119.8° | 118.8° |
| N4 | C4 | C5 | 121.9° | 120.6° |
| C4 | N4 | H41 | 119.9° | 120.0° |
| C4 | N4 | H42 | 120.0° | 120.0° |
| C4 | C5 | C6 | 117.2° | 118.8° |
| C4 | C5 | H5 | 120.4° | 120.6° |
| H41 | N4 | H42 | 120.1° | 120.0° |
| C6 | C5 | H5 | 122.3° | 120.6° |
| C5 | C6 | H6 | 117.4° | 120.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| OP3 | P | OP1 | OP2 | 122.4° | 120.0° |
| OP3 | P | OP1 | O5' | 111.3° | 120.0° |
| OP3 | P | OP2 | O5' | 112.2° | 119.9° |
| OP3 | P | OP2 | HOP2 | 180.0° | 60.0° |
| OP3 | P | O5' | C5' | 36.2° | 55.0° |
| HOP3 | OP3 | P | OP1 | 180.0° | 88.7° |
| HOP3 | OP3 | P | OP2 | 51.3° | 151.3° |
| HOP3 | OP3 | P | O5' | 65.3° | 31.4° |
| OP1 | P | OP2 | O5' | 125.4° | 120.1° |
| OP1 | P | OP2 | HOP2 | 57.6° | 60.0° |
| OP1 | P | O5' | C5' | 150.3° | 65.0° |
| OP2 | P | O5' | C5' | 78.8° | 175.0° |
| O5' | P | OP2 | HOP2 | 67.9° | 179.9° |
| P | O5' | C5' | C4' | 78.1° | 180.0° |
| P | O5' | C5' | H5' | 159.5° | 60.0° |
| P | O5' | C5' | H5'' | 41.5° | 60.0° |
| O5' | C5' | C4' | H5' | 122.8° | 120.1° |
| O5' | C5' | C4' | H5'' | 118.9° | 120.0° |
| O5' | C5' | H5' | H5'' | 117.4° | 120.0° |
| O5' | C5' | C4' | O4' | 53.0° | 66.4° |
| O5' | C5' | C4' | C3' | 170.5° | 178.2° |
| O5' | C5' | C4' | H4' | 65.0° | 55.8° |
| C4' | C5' | H5' | H5'' | 118.6° | 119.9° |
| C5' | C4' | O4' | C3' | 124.5° | 118.9° |
| C5' | C4' | O4' | H4' | 117.7° | 122.3° |
| C5' | C4' | C3' | H4' | 124.3° | 122.3° |
| C5' | C4' | O4' | C1' | 114.3° | 159.5° |
| C5' | C4' | C3' | O3' | 158.9° | 98.4° |
| C5' | C4' | C3' | C2' | 83.5° | 143.0° |
| C5' | C4' | C3' | H3' | 37.0° | 24.2° |
| H5' | C5' | C4' | O4' | 175.8° | 173.5° |
| H5' | C5' | C4' | C3' | 66.7° | 58.1° |
| H5' | C5' | C4' | H4' | 57.8° | 64.2° |
| H5'' | C5' | C4' | O4' | 65.9° | 53.6° |
| H5'' | C5' | C4' | C3' | 51.6° | 61.9° |
| H5'' | C5' | C4' | H4' | 176.1° | 175.8° |
| O4' | C4' | C3' | H4' | 117.9° | 118.8° |
| O4' | C4' | C3' | O3' | 83.2° | 142.7° |
| O4' | C4' | C3' | C2' | 34.4° | 24.1° |
| O4' | C4' | C3' | H3' | 154.9° | 94.7° |
| C4' | O4' | C1' | C2' | 18.7° | 40.5° |
| C4' | O4' | C1' | N1 | 144.7° | 159.4° |
| C4' | O4' | C1' | H1' | 97.9° | 78.4° |
| C3' | C4' | O4' | C1' | 10.2° | 40.5° |
| C4' | C3' | O3' | C2' | 109.0° | 114.7° |
| C4' | C3' | O3' | H3' | 122.6° | 122.7° |
| C4' | C3' | C2' | H3' | 118.0° | 118.8° |
| C4' | C3' | O3' | HO3' | 180.0° | 180.0° |
| C4' | C3' | C2' | O2' | 164.1° | 118.8° |
| C4' | C3' | C2' | C1' | 43.8° | 0.1° |
| C4' | C3' | C2' | H2' | 73.0° | 118.6° |
| H4' | C4' | O4' | C1' | 128.1° | 78.3° |
| H4' | C4' | C3' | O3' | 34.6° | 23.9° |
| H4' | C4' | C3' | C2' | 152.3° | 94.7° |
| H4' | C4' | C3' | H3' | 87.2° | 146.5° |
| O4' | C1' | C2' | C3' | 39.8° | 23.9° |
| O4' | C1' | C2' | O2' | 163.1° | 142.6° |
| O4' | C1' | C2' | N1 | 121.4° | 118.8° |
| O4' | C1' | C2' | H1' | 106.9° | 118.9° |
| O4' | C1' | C2' | H2' | 73.5° | 94.7° |
| O4' | C1' | N1 | H1' | 109.6° | 122.2° |
| O4' | C1' | N1 | C2 | 92.6° | 57.1° |
| O4' | C1' | N1 | C6 | 87.1° | 123.0° |
| O3' | C3' | C2' | H3' | 126.1° | 122.6° |
| O3' | C3' | C2' | O2' | 48.2° | 0.1° |
| O3' | C3' | C2' | C1' | 72.1° | 118.8° |
| O3' | C3' | C2' | H2' | 171.0° | 122.7° |
| C2' | C3' | O3' | HO3' | 71.0° | 65.4° |
| C3' | C2' | O2' | C1' | 113.8° | 114.7° |
| C3' | C2' | O2' | H2' | 121.5° | 122.6° |
| C3' | C2' | C1' | H2' | 113.3° | 118.6° |
| C3' | C2' | O2' | HO2' | 173.8° | 61.4° |
| C3' | C2' | C1' | N1 | 161.2° | 142.7° |
| C3' | C2' | C1' | H1' | 67.1° | 95.0° |
| H3' | C3' | O3' | HO3' | 57.5° | 57.3° |
| H3' | C3' | C2' | O2' | 77.9° | 122.5° |
| H3' | C3' | C2' | C1' | 161.8° | 118.6° |
| H3' | C3' | C2' | H2' | 44.9° | 0.1° |
| O2' | C2' | C1' | H2' | 123.4° | 122.7° |
| O2' | C2' | C1' | N1 | 75.5° | 98.6° |
| O2' | C2' | C1' | H1' | 56.2° | 23.7° |
| C1' | C2' | O2' | HO2' | 72.4° | 176.1° |
| C2' | C1' | N1 | H1' | 132.2° | 122.3° |
| C2' | C1' | N1 | C2 | 149.2° | 58.4° |
| C2' | C1' | N1 | C6 | 31.1° | 121.5° |
| H2' | C2' | O2' | HO2' | 52.3° | 61.2° |
| H2' | C2' | C1' | N1 | 47.9° | 24.2° |
| H2' | C2' | C1' | H1' | 179.6° | 146.5° |
| C1' | N1 | C2 | C6 | 179.7° | 179.9° |
| C1' | N1 | C2 | O2 | 0.3° | 0.1° |
| C1' | N1 | C2 | N3 | 179.6° | 179.7° |
| C1' | N1 | C6 | C5 | 179.6° | 180.0° |
| C1' | N1 | C6 | H6 | 0.1° | 0.1° |
| H1' | C1' | N1 | C2 | 17.0° | 179.3° |
| H1' | C1' | N1 | C6 | 163.3° | 0.8° |
| N1 | C2 | O2 | N3 | 179.9° | 179.8° |
| N1 | C2 | N3 | C4 | 0.0° | 0.5° |
| N1 | C2 | N3 | HN3 | 179.9° | 180.0° |
| C2 | N1 | C6 | C5 | 0.0° | 0.1° |
| C2 | N1 | C6 | H6 | 179.6° | 179.9° |
| C6 | N1 | C2 | O2 | 180.0° | 180.0° |
| C6 | N1 | C2 | N3 | 0.1° | 0.2° |
| N1 | C6 | C5 | C4 | 0.1° | 0.1° |
| N1 | C6 | C5 | H6 | 179.5° | 179.9° |
| N1 | C6 | C5 | H5 | 179.5° | 179.9° |
| O2 | C2 | N3 | C4 | 179.9° | 179.7° |
| O2 | C2 | N3 | HN3 | 0.0° | 0.2° |
| C2 | N3 | C4 | HN3 | 180.0° | 179.5° |
| C2 | N3 | C4 | N4 | 179.5° | 179.7° |
| C2 | N3 | C4 | C5 | 0.1° | 0.5° |
| N3 | C4 | N4 | C5 | 179.7° | 179.7° |
| N3 | C4 | N4 | H41 | 0.5° | 179.6° |
| N3 | C4 | N4 | H42 | 179.5° | 0.5° |
| N3 | C4 | C5 | C6 | 0.2° | 0.3° |
| N3 | C4 | C5 | H5 | 179.5° | 179.8° |
| HN3 | N3 | C4 | N4 | 0.4° | 0.3° |
| HN3 | N3 | C4 | C5 | 179.9° | 180.0° |
| C4 | N4 | H41 | H42 | 180.0° | 179.9° |
| N4 | C4 | C5 | C6 | 179.5° | 180.0° |
| N4 | C4 | C5 | H5 | 0.9° | 0.1° |
| C5 | C4 | N4 | H41 | 179.8° | 0.1° |
| C5 | C4 | N4 | H42 | 0.2° | 179.8° |
| C4 | C5 | C6 | H5 | 179.6° | 180.0° |
| C4 | C5 | C6 | H6 | 179.4° | 179.9° |
| H5 | C5 | C6 | H6 | 0.9° | 0.1° |
