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CGR

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O2BPBsing1.62Å1.52Å
O2BHO2Bsing0.98Å0.95Å
PBO5'Rsing1.62Å1.61Å
PBO1Bdoub1.50Å1.51Å
PBO3sing1.61Å1.62Å
O3PAsing1.61Å1.62Å
PAO5'sing1.62Å1.60Å
PAO2Adoub1.50Å1.52Å
PAO1Asing1.62Å1.49Å
O1AHO1Asing0.98Å0.95Å
O5'RC5'Rsing1.42Å1.46Å
C5'RC4'Rsing1.52Å1.54Å
C5'RH51sing1.10Å1.10Å
C5'RH52sing1.09Å1.10Å
C4'RO4'Rsing1.44Å1.46Å
C4'RC3'Rsing1.52Å1.54Å
C4'RHC4'sing1.10Å1.10Å
O4'RC1'Rsing1.45Å1.45Å
C1'RC2'Rsing1.53Å1.53Å
C1'RN7sing1.45Å1.50Å
C1'RHC1'sing1.10Å1.10Å
C2'RO2'Rsing1.43Å1.45Å
C2'RC3'Rsing1.52Å1.54Å
C2'RHC2'sing1.09Å1.10Å
O2'RHO2sing0.97Å0.95Å
C3'RO3'Rsing1.41Å1.45Å
C3'RHC3'sing1.09Å1.10Å
O3'RHO3sing0.97Å0.95Å
N7C8sing1.47Å1.36Å
N7C5Asing1.39Å1.38Å
C8N9sing1.48Å1.35Å
C8H81sing1.09Å1.10Å
C8H82sing1.09Å1.10Å
N9C4Asing1.41Å1.33Å
N9C1'sing1.45Å1.48Å
C1'C2'sing1.53Å1.52Å
C1'O4'sing1.44Å1.42Å
C1'H1'sing1.10Å1.10Å
O4'C4'sing1.44Å1.45Å
C2'O2'sing1.43Å1.44Å
C2'C3'sing1.52Å1.51Å
C2'H2'sing1.09Å1.10Å
O2'HO2'sing0.97Å0.95Å
C3'O3'sing1.41Å1.45Å
C3'C4'sing1.52Å1.52Å
C3'H3'sing1.09Å1.10Å
O3'HO3'sing0.97Å0.95Å
C4'C5'sing1.52Å1.52Å
C4'H4'sing1.10Å1.10Å
C5'O5'sing1.42Å1.44Å
C5'H5'1sing1.10Å1.10Å
C5'H5'2sing1.10Å1.10Å
C4AC5Adoub1.35Å1.38Å
C4AN3Asing1.37Å1.35Å
C5AC6Asing1.47Å1.40Å
N3AC2Adoub1.31Å1.36Å
C2AN1Asing1.39Å1.37Å
C2AN2Asing1.37Å1.34Å
N2AH2A1sing0.99Å1.00Å
N2AH2A2sing0.99Å1.00Å
N1AC6Asing1.39Å1.37Å
N1AHN1Asing1.02Å1.00Å
C6AO6Adoub1.22Å1.25Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
PBO2BHO2B109.5°118.8°
O2BPBO5'R107.2°103.6°
O2BPBO1B123.2°115.3°
O2BPBO3113.4°103.5°
O5'RPBO1B104.0°115.4°
O5'RPBO3104.7°102.2°
PBO5'RC5'R119.8°119.7°
O1BPBO3102.6°115.1°
PBO3PA124.3°133.3°
O3PAO5'103.4°103.7°
O3PAO2A109.7°115.2°
O3PAO1A105.3°103.8°
O5'PAO2A111.5°114.5°
O5'PAO1A112.1°103.6°
PAO5'C5'120.5°119.5°
O2APAO1A114.0°114.6°
PAO1AHO1A109.5°118.8°
O5'RC5'RC4'R111.5°110.1°
O5'RC5'RH51108.8°107.1°
O5'RC5'RH52108.3°110.5°
C4'RC5'RH51108.8°110.2°
C4'RC5'RH52108.3°110.5°
C5'RC4'RO4'R113.5°109.9°
C5'RC4'RC3'R109.0°115.3°
C5'RC4'RHC4'105.5°108.3°
H51C5'RH52111.1°108.4°
O4'RC4'RC3'R104.3°104.7°
O4'RC4'RHC4'110.1°107.7°
C4'RO4'RC1'R111.3°108.9°
C3'RC4'RHC4'114.6°110.7°
C4'RC3'RC2'R105.8°102.1°
C4'RC3'RO3'R108.8°112.9°
C4'RC3'RHC3'113.8°111.4°
O4'RC1'RC2'R104.5°106.8°
O4'RC1'RN7106.0°112.1°
O4'RC1'RHC1'116.1°105.6°
C2'RC1'RN7113.2°111.4°
C2'RC1'RHC1'109.3°111.4°
C1'RC2'RO2'R109.4°109.4°
C1'RC2'RC3'R106.9°102.8°
C1'RC2'RHC2'111.7°114.3°
N7C1'RHC1'107.9°109.5°
C1'RN7C8122.3°122.5°
C1'RN7C5A132.7°129.1°
O2'RC2'RC3'R110.8°111.4°
O2'RC2'RHC2'107.9°106.7°
C2'RO2'RHO2109.5°107.2°
C3'RC2'RHC2'110.3°112.3°
C2'RC3'RO3'R113.6°112.6°
C2'RC3'RHC3'109.1°109.1°
O3'RC3'RHC3'106.0°108.6°
C3'RO3'RHO3109.5°106.4°
C8N7C5A104.9°108.4°
N7C8N9110.4°102.0°
N7C8H81109.2°110.8°
N7C8H82109.0°110.8°
N7C5AC4A108.9°112.1°
N7C5AC6A132.0°127.2°
N9C8H81109.2°111.1°
N9C8H82109.0°110.8°
C8N9C4A108.6°110.2°
C8N9C1'127.9°123.3°
H81C8H82110.2°111.0°
C4AN9C1'123.4°125.9°
N9C4AC5A107.2°107.1°
N9C4AN3A131.2°129.0°
N9C1'C2'111.2°112.9°
N9C1'O4'108.0°111.2°
N9C1'H1'108.4°109.5°
C2'C1'O4'106.6°106.8°
C2'C1'H1'109.7°109.9°
C1'C2'O2'108.3°108.8°
C1'C2'C3'101.8°102.6°
C1'C2'H2'117.5°115.0°
O4'C1'H1'112.9°106.4°
C1'O4'C4'108.3°109.0°
O4'C4'C3'107.3°105.6°
O4'C4'C5'107.5°109.0°
O4'C4'H4'113.9°108.6°
O2'C2'C3'116.0°109.6°
O2'C2'H2'103.8°107.1°
C2'O2'HO2'109.5°107.2°
C3'C2'H2'110.1°113.7°
C2'C3'O3'108.5°113.2°
C2'C3'C4'103.7°102.0°
C2'C3'H3'113.9°110.1°
O3'C3'C4'110.1°112.3°
O3'C3'H3'108.0°108.3°
C3'O3'HO3'109.5°106.4°
C4'C3'H3'112.5°110.8°
C3'C4'C5'114.2°114.8°
C3'C4'H4'107.2°110.0°
C5'C4'H4'107.0°108.7°
C4'C5'O5'111.4°110.6°
C4'C5'H5'1108.9°110.4°
C4'C5'H5'2108.4°110.0°
O5'C5'H5'1108.8°111.3°
O5'C5'H5'2108.4°108.4°
H5'1C5'H5'2110.9°106.1°
C5AC4AN3A121.6°123.9°
C4AC5AC6A119.1°120.6°
C4AN3AC2A118.7°117.2°
C5AC6AN1A118.6°111.8°
C5AC6AO6A122.4°123.6°
N3AC2AN1A122.0°122.2°
N3AC2AN2A118.7°122.2°
N1AC2AN2A119.3°115.5°
C2AN1AC6A119.9°124.2°
C2AN1AHN1A120.0°117.9°
C2AN2AH2A1110.2°118.3°
C2AN2AH2A2124.9°118.3°
H2A1N2AH2A2124.9°123.4°
C6AN1AHN1A120.0°117.9°
N1AC6AO6A119.0°124.6°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O2BPBO5'RO1B131.9°127.0°
O2BPBO5'RO3120.8°107.4°
O2BPBO1BO3129.3°120.5°
O2BPBO3PA26.5°74.8°
O2BPBO5'RC5'R178.0°77.4°
HO2BO2BPBO5'R54.4°41.9°
HO2BO2BPBO1B65.9°168.9°
HO2BO2BPBO3169.4°64.5°
O5'RPBO1BO3108.9°118.7°
O5'RPBO3PA90.0°177.8°
PBO5'RC5'RC4'R116.5°124.3°
PBO5'RC5'RH513.5°115.9°
PBO5'RC5'RH52124.4°2.0°
O1BPBO3PA161.6°52.0°
O1BPBO5'RC5'R50.1°49.6°
PBO3PAO5'50.0°166.2°
PBO3PAO2A69.1°67.9°
PBO3PAO1A167.7°58.2°
O3PBO5'RC5'R57.3°175.2°
O3PAO5'O2A117.9°126.3°
O3PAO5'O1A112.9°108.2°
O3PAO2AO1A117.8°120.4°
O3PAO1AHO1A137.2°144.4°
O3PAO5'C5'176.4°49.8°
O5'PAO2AO1A128.2°119.5°
O5'PAO1AHO1A111.1°107.5°
PAO5'C5'C4'151.7°129.3°
PAO5'C5'H5'188.3°6.2°
PAO5'C5'H5'232.5°110.0°
O2APAO1AHO1A16.8°17.9°
O2APAO5'C5'58.5°176.1°
O1APAO5'C5'70.7°58.4°
O5'RC5'RC4'RH51120.0°117.9°
O5'RC5'RC4'RH52119.1°122.3°
O5'RC5'RH51H52119.2°119.2°
O5'RC5'RC4'RO4'R47.9°63.9°
O5'RC5'RC4'RC3'R163.7°54.2°
O5'RC5'RC4'RHC4'72.8°178.7°
C4'RC5'RH51H52119.1°121.1°
C5'RC4'RO4'RC3'R118.6°124.5°
C5'RC4'RO4'RHC4'118.0°117.7°
C5'RC4'RC3'RHC4'117.9°123.3°
C5'RC4'RO4'RC1'R90.6°150.3°
C5'RC4'RC3'RC2'R104.0°158.8°
C5'RC4'RC3'RO3'R133.7°80.0°
C5'RC4'RC3'RHC3'15.7°42.5°
H51C5'RC4'RO4'R167.9°54.0°
H51C5'RC4'RC3'R76.3°172.1°
H51C5'RC4'RHC4'47.2°63.3°
H52C5'RC4'RO4'R71.2°173.8°
H52C5'RC4'RC3'R44.6°68.1°
H52C5'RC4'RHC4'168.1°56.5°
O4'RC4'RC3'RHC4'120.5°115.7°
C4'RO4'RC1'RC2'R26.3°3.4°
C4'RO4'RC1'RN793.5°125.6°
C4'RO4'RC1'RHC1'146.8°115.3°
O4'RC4'RC3'RC2'R17.6°37.8°
O4'RC4'RC3'RO3'R104.7°159.0°
O4'RC4'RC3'RHC3'137.3°78.5°
C3'RC4'RO4'RC1'R28.0°25.9°
C4'RC3'RC2'RC1'R2.6°34.8°
C4'RC3'RC2'RO2'R121.7°82.3°
C4'RC3'RC2'RO3'R119.2°121.4°
C4'RC3'RC2'RHC3'122.8°118.0°
C4'RC3'RC2'RHC2'119.0°158.1°
C4'RC3'RO3'RHC3'122.8°124.1°
C4'RC3'RO3'RHO386.8°57.3°
HC4'C4'RO4'RC1'R151.4°91.9°
HC4'C4'RC3'RC2'R138.1°77.9°
HC4'C4'RC3'RO3'R15.7°43.3°
HC4'C4'RC3'RHC3'102.2°165.8°
O4'RC1'RC2'RN7114.9°122.7°
O4'RC1'RC2'RHC1'124.9°114.8°
O4'RC1'RN7HC1'125.0°116.8°
O4'RC1'RC2'RO2'R106.5°98.1°
O4'RC1'RC2'RC3'R13.5°20.3°
O4'RC1'RC2'RHC2'134.2°142.3°
O4'RC1'RN7C822.1°25.6°
O4'RC1'RN7C5A156.1°157.5°
C2'RC1'RN7HC1'121.1°123.6°
C1'RC2'RO2'RC3'R117.6°112.9°
C1'RC2'RO2'RHC2'121.6°124.2°
C1'RC2'RC3'RHC2'121.6°123.3°
C1'RC2'RO2'RHO2160.9°87.8°
C1'RC2'RC3'RO3'R116.6°156.2°
C1'RC2'RC3'RHC3'125.4°83.2°
C2'RC1'RN7C8136.1°94.0°
C2'RC1'RN7C5A42.2°82.9°
N7C1'RC2'RO2'R138.7°139.2°
N7C1'RC2'RC3'R101.3°102.3°
N7C1'RC2'RHC2'19.4°19.7°
C1'RN7C8C5A178.7°177.5°
C1'RN7C8N9178.9°179.5°
C1'RN7C8H8161.1°61.2°
C1'RN7C8H8259.2°62.5°
C1'RN7C5AC4A178.7°179.2°
C1'RN7C5AC6A3.6°0.3°
HC1'C1'RC2'RO2'R18.4°16.7°
HC1'C1'RC2'RC3'R138.4°135.1°
HC1'C1'RC2'RHC2'100.9°102.9°
HC1'C1'RN7C8102.9°142.4°
HC1'C1'RN7C5A78.9°40.7°
O2'RC2'RC3'RHC2'119.3°119.6°
O2'RC2'RC3'RO3'R2.4°39.1°
O2'RC2'RC3'RHC3'115.5°159.8°
C3'RC2'RO2'RHO281.6°159.3°
C2'RC3'RO3'RHC3'119.7°121.0°
C2'RC3'RO3'RHO3155.7°57.7°
HC2'C2'RO2'RHO239.2°36.4°
HC2'C2'RC3'RO3'R121.8°80.5°
HC2'C2'RC3'RHC3'3.8°40.2°
HC3'C3'RO3'RHO336.0°178.6°
N7C8N9H81120.0°118.1°
N7C8N9H82119.7°118.0°
N7C8H81H82119.6°123.6°
N7C8N9C4A0.1°3.2°
N7C8N9C1'179.0°174.8°
C8N7C5AC4A0.2°1.9°
C8N7C5AC6A177.9°177.0°
C5AN7C8N90.2°3.0°
C5AN7C8H81120.2°121.3°
C5AN7C8H82119.5°115.0°
N7C5AC4AN90.1°0.2°
N7C5AC4AC6A178.1°179.0°
N7C5AC4AN3A179.6°179.4°
N7C5AC6AN1A179.7°179.4°
N7C5AC6AO6A0.2°0.3°
N9C8H81H82119.6°123.7°
C8N9C4AC1'178.9°171.4°
C8N9C1'C2'9.3°50.1°
C8N9C1'O4'125.9°70.0°
C8N9C1'H1'111.5°172.8°
C8N9C4AC5A0.0°2.2°
C8N9C4AN3A179.5°177.3°
H81C8N9C4A120.1°121.3°
H81C8N9C1'61.0°67.0°
H82C8N9C4A119.5°114.9°
H82C8N9C1'59.3°56.8°
C4AN9C1'C2'169.5°139.6°
C4AN9C1'O4'52.8°100.3°
C4AN9C1'H1'69.8°16.9°
N9C4AC5AN3A179.5°179.6°
N9C4AC5AC6A178.2°179.2°
N9C4AN3AC2A179.4°179.5°
N9C1'C2'O4'117.5°122.5°
N9C1'C2'H1'119.9°122.5°
N9C1'O4'H1'119.8°119.1°
N9C1'O4'C4'144.8°121.1°
N9C1'C2'O2'84.6°145.9°
N9C1'C2'C3'152.7°98.1°
N9C1'C2'H2'32.4°25.8°
C1'N9C4AC5A178.9°173.6°
C1'N9C4AN3A0.5°6.0°
C2'C1'O4'H1'120.6°117.3°
C2'C1'O4'C4'25.1°2.5°
C1'C2'O2'C3'113.6°111.4°
C1'C2'O2'H2'125.6°124.9°
C1'C2'C3'H2'125.4°124.8°
C1'C2'O2'HO2'53.7°122.3°
C1'C2'C3'O3'86.1°156.5°
C1'C2'C3'C4'31.0°35.6°
C1'C2'C3'H3'153.6°82.1°
O4'C1'C2'O2'157.8°91.6°
O4'C1'C2'C3'35.2°24.4°
O4'C1'C2'H2'85.1°148.3°
C1'O4'C4'C3'4.6°20.7°
C1'O4'C4'C5'127.8°144.5°
C1'O4'C4'H4'113.8°97.2°
H1'C1'O4'C4'95.4°119.8°
H1'C1'C2'O2'35.3°23.4°
H1'C1'C2'C3'87.4°139.4°
H1'C1'C2'H2'152.3°96.7°
O4'C4'C3'C2'17.4°35.3°
O4'C4'C3'O3'98.5°156.9°
O4'C4'C3'C5'119.0°120.0°
O4'C4'C3'H4'122.7°116.9°
O4'C4'C3'H3'141.0°81.8°
O4'C4'C5'H4'122.7°118.2°
O4'C4'C5'O5'67.4°171.8°
O4'C4'C5'H5'152.6°48.2°
O4'C4'C5'H5'2173.4°68.6°
O2'C2'C3'H2'117.4°119.7°
O2'C2'C3'O3'31.2°41.0°
O2'C2'C3'C4'148.2°79.9°
O2'C2'C3'H3'89.2°162.5°
C3'C2'O2'HO2'167.3°10.9°
C2'C3'O3'C4'112.9°114.8°
C2'C3'O3'H3'124.0°122.4°
C2'C3'C4'H3'123.6°117.1°
C2'C3'O3'HO3'30.6°173.3°
C2'C3'C4'C5'101.6°155.4°
C2'C3'C4'H4'140.1°81.6°
H2'C2'O2'HO2'71.9°112.8°
H2'C2'C3'O3'148.5°78.7°
H2'C2'C3'C4'94.4°160.4°
H2'C2'C3'H3'28.2°42.7°
O3'C3'C4'H3'120.5°121.4°
O3'C3'C4'C5'142.5°83.1°
O3'C3'C4'H4'24.2°39.9°
C4'C3'O3'HO3'143.5°58.5°
C3'C4'C5'H4'118.4°123.7°
C3'C4'C5'O5'51.5°53.6°
C3'C4'C5'H5'1171.5°70.0°
C3'C4'C5'H5'267.8°173.3°
H3'C3'O3'HO3'93.4°64.3°
H3'C3'C4'C5'22.0°38.2°
H3'C3'C4'H4'96.3°161.3°
C4'C5'O5'H5'1120.0°123.1°
C4'C5'O5'H5'2119.2°120.6°
C4'C5'H5'1H5'2119.2°119.1°
H4'C4'C5'O5'169.9°70.1°
H4'C4'C5'H5'170.1°166.3°
H4'C4'C5'H5'250.7°49.6°
O5'C5'H5'1H5'2119.2°117.7°
C5AC4AN3AC2A1.2°0.0°
C4AC5AC6AN1A2.2°0.6°
C4AC5AC6AO6A177.8°179.1°
N3AC4AC5AC6A2.3°0.4°
C4AN3AC2AN1A0.1°0.1°
C4AN3AC2AN2A180.0°180.0°
C5AC6AN1AC2A1.1°0.5°
C5AC6AN1AO6A179.9°179.7°
C5AC6AN1AHN1A178.9°179.8°
N3AC2AN1AN2A179.9°179.8°
N3AC2AN2AH2A1179.9°0.2°
N3AC2AN2AH2A20.1°179.7°
N3AC2AN1AC6A0.0°0.1°
N3AC2AN1AHN1A180.0°179.8°
N1AC2AN2AH2A10.0°179.6°
N1AC2AN2AH2A2180.0°0.4°
C2AN1AC6AHN1A180.0°179.7°
C2AN1AC6AO6A178.9°179.2°
C2AN2AH2A1H2A2180.0°180.0°
N2AC2AN1AC6A179.9°179.7°
N2AC2AN1AHN1A0.1°0.0°
HN1AN1AC6AO6A1.1°0.5°

218853

PDB entries from 2024-04-24

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