CFZ

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O2P	P	doub	1.48Å	1.49Å
P	O5'	sing	1.61Å	1.59Å
P	O1P	sing	1.61Å	1.49Å
P	O3P	sing	1.61Å	1.60Å
C6	N1	sing	1.36Å	1.37Å
C2	N1	sing	1.35Å	1.40Å
N1	C1'	sing	1.47Å	1.47Å
N3	C2	sing	1.33Å	1.35Å
C2	O2	doub	1.22Å	1.24Å
C4	N3	doub	1.33Å	1.33Å
N4	C4	sing	1.38Å	1.33Å
C4	C5	sing	1.41Å	1.43Å
N4	HN4	sing	0.97Å	1.00Å
N4	HN4A	sing	0.97Å	1.00Å
C5	C6	doub	1.35Å	1.34Å
C5	H5	sing	1.08Å	1.08Å
C6	H6	sing	1.08Å	1.08Å
C2'	C1'	sing	1.54Å	1.52Å
C1'	O4'	sing	1.45Å	1.42Å
C1'	H1'	sing	1.09Å	1.10Å
O1P	HO1P	sing	0.97Å	0.95Å
C3'	C2'	sing	1.55Å	1.53Å
C2'	F2'	sing	1.40Å	1.41Å
C2'	H2'	sing	1.09Å	1.10Å
C3'	O3'	sing	1.43Å	1.43Å
C3'	C4'	sing	1.54Å	1.52Å
C3'	H3'	sing	1.09Å	1.10Å
O3'	HO3'	sing	0.97Å	0.95Å
O3P	HO3P	sing	0.97Å	0.95Å
O4'	C4'	sing	1.44Å	1.46Å
C5'	C4'	sing	1.53Å	1.51Å
C4'	H4'	sing	1.09Å	1.10Å
O5'	C5'	sing	1.43Å	1.42Å
C5'	H5'	sing	1.09Å	1.10Å
C5'	H5'A	sing	1.09Å	1.10Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O2P	P	O5'	108.1°	109.4°
O2P	P	O1P	120.0°	109.5°
O2P	P	O3P	108.6°	109.5°
O5'	P	O1P	108.7°	109.5°
O5'	P	O3P	103.9°	109.5°
P	O5'	C5'	120.3°	123.0°
O1P	P	O3P	106.4°	109.5°
P	O1P	HO1P	109.5°	114.0°
P	O3P	HO3P	109.5°	113.9°
C6	N1	C2	120.3°	120.4°
C6	N1	C1'	120.9°	119.8°
N1	C6	C5	121.0°	119.3°
N1	C6	H6	119.5°	120.4°
C2	N1	C1'	118.8°	119.8°
N1	C2	N3	119.3°	121.0°
N1	C2	O2	119.0°	119.5°
N1	C1'	C2'	113.3°	110.4°
N1	C1'	O4'	108.7°	110.4°
N1	C1'	H1'	106.4°	110.3°
N3	C2	O2	121.7°	119.5°
C2	N3	C4	120.0°	120.7°
N3	C4	N4	117.9°	120.2°
N3	C4	C5	121.9°	119.6°
N4	C4	C5	120.2°	120.2°
C4	N4	HN4	120.0°	120.1°
C4	N4	HN4A	120.0°	120.0°
C4	C5	C6	117.4°	119.0°
C4	C5	H5	121.3°	120.5°
HN4	N4	HN4A	120.0°	119.9°
C6	C5	H5	121.3°	120.5°
C5	C6	H6	119.5°	120.4°
C2'	C1'	O4'	105.9°	104.8°
C2'	C1'	H1'	109.1°	110.5°
C1'	C2'	C3'	101.5°	104.1°
C1'	C2'	F2'	112.1°	110.5°
C1'	C2'	H2'	113.7°	110.5°
O4'	C1'	H1'	113.7°	110.4°
C1'	O4'	C4'	109.7°	105.3°
C3'	C2'	F2'	111.6°	110.5°
C3'	C2'	H2'	114.3°	110.6°
C2'	C3'	O3'	113.5°	110.5°
C2'	C3'	C4'	100.2°	104.1°
C2'	C3'	H3'	114.1°	110.5°
F2'	C2'	H2'	104.0°	110.5°
O3'	C3'	C4'	112.5°	110.5°
O3'	C3'	H3'	102.1°	110.5°
C3'	O3'	HO3'	109.5°	113.9°
C4'	C3'	H3'	115.0°	110.6°
C3'	C4'	O4'	102.9°	104.8°
C3'	C4'	C5'	117.3°	110.4°
C3'	C4'	H4'	108.7°	110.4°
O4'	C4'	C5'	109.1°	110.4°
O4'	C4'	H4'	116.9°	110.4°
C5'	C4'	H4'	102.4°	110.4°
C4'	C5'	O5'	110.4°	109.5°
C4'	C5'	H5'	109.2°	109.5°
C4'	C5'	H5'A	109.2°	109.5°
O5'	C5'	H5'	109.2°	109.5°
O5'	C5'	H5'A	109.2°	109.4°
H5'	C5'	H5'A	109.7°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O2P	P	O5'	O1P	131.8°	120.0°
O2P	P	O5'	O3P	115.2°	120.0°
O2P	P	O1P	O3P	123.5°	120.0°
O2P	P	O1P	HO1P	0.0°	60.0°
O2P	P	O3P	HO3P	0.0°	180.0°
O2P	P	O5'	C5'	173.6°	55.0°
O5'	P	O1P	O3P	111.4°	120.0°
O5'	P	O1P	HO1P	125.1°	180.0°
O5'	P	O3P	HO3P	114.9°	60.0°
P	O5'	C5'	C4'	165.9°	180.0°
P	O5'	C5'	H5'	45.9°	60.0°
P	O5'	C5'	H5'A	74.0°	60.0°
O1P	P	O3P	HO3P	130.4°	60.0°
O1P	P	O5'	C5'	41.8°	175.0°
O3P	P	O1P	HO1P	123.6°	60.0°
O3P	P	O5'	C5'	71.2°	65.0°
C6	N1	C2	C1'	179.5°	179.7°
C6	N1	C2	N3	1.2°	0.3°
C6	N1	C2	O2	178.7°	179.8°
N1	C6	C5	C4	0.1°	0.6°
N1	C6	C5	H6	180.0°	179.5°
N1	C6	C5	H5	180.0°	179.7°
C6	N1	C1'	C2'	103.1°	117.9°
C6	N1	C1'	O4'	14.3°	126.7°
C6	N1	C1'	H1'	137.0°	4.5°
N1	C2	N3	O2	179.9°	180.0°
N1	C2	N3	C4	0.5°	0.1°
C2	N1	C6	C5	1.0°	0.6°
C2	N1	C6	H6	179.0°	180.0°
C2	N1	C1'	C2'	77.4°	61.8°
C2	N1	C1'	O4'	165.2°	53.6°
C2	N1	C1'	H1'	42.5°	175.8°
C1'	N1	C2	N3	178.3°	179.9°
C1'	N1	C2	O2	1.8°	0.1°
C1'	N1	C6	C5	178.5°	179.7°
C1'	N1	C6	H6	1.5°	0.3°
N1	C1'	C2'	O4'	119.0°	118.8°
N1	C1'	C2'	H1'	118.3°	122.3°
N1	C1'	O4'	H1'	118.2°	122.2°
N1	C1'	C2'	C3'	90.7°	142.8°
N1	C1'	C2'	F2'	150.1°	98.6°
N1	C1'	C2'	H2'	32.5°	24.0°
N1	C1'	O4'	C4'	119.7°	159.4°
C2	N3	C4	N4	179.4°	180.0°
C2	N3	C4	C5	0.4°	0.0°
O2	C2	N3	C4	179.4°	179.9°
N3	C4	N4	C5	179.9°	179.9°
N3	C4	N4	HN4	0.0°	0.1°
N3	C4	N4	HN4A	180.0°	180.0°
N3	C4	C5	C6	0.7°	0.3°
N3	C4	C5	H5	179.3°	180.0°
C4	N4	HN4	HN4A	180.0°	180.0°
N4	C4	C5	C6	179.2°	179.6°
N4	C4	C5	H5	0.8°	0.1°
C5	C4	N4	HN4	179.9°	180.0°
C5	C4	N4	HN4A	0.1°	0.1°
C4	C5	C6	H5	180.0°	179.7°
C4	C5	C6	H6	179.9°	180.0°
H5	C5	C6	H6	0.1°	0.3°
C2'	C1'	O4'	H1'	119.8°	119.0°
C1'	C2'	C3'	F2'	119.6°	118.6°
C1'	C2'	C3'	H2'	122.8°	118.7°
C1'	C2'	F2'	H2'	123.3°	122.6°
C1'	C2'	C3'	O3'	162.3°	118.6°
C1'	C2'	C3'	C4'	42.1°	0.0°
C1'	C2'	C3'	H3'	81.3°	118.8°
C2'	C1'	O4'	C4'	2.3°	40.5°
O4'	C1'	C2'	C3'	28.3°	24.0°
O4'	C1'	C2'	F2'	90.9°	142.6°
O4'	C1'	C2'	H2'	151.5°	94.8°
C1'	O4'	C4'	C3'	24.9°	40.5°
C1'	O4'	C4'	C5'	150.2°	159.4°
C1'	O4'	C4'	H4'	94.2°	78.3°
H1'	C1'	C2'	C3'	151.0°	94.9°
H1'	C1'	C2'	F2'	31.9°	23.7°
H1'	C1'	C2'	H2'	85.8°	146.3°
H1'	C1'	O4'	C4'	122.1°	78.4°
C3'	C2'	F2'	H2'	123.6°	122.7°
C2'	C3'	O3'	C4'	112.9°	114.6°
C2'	C3'	O3'	H3'	123.2°	122.7°
C2'	C3'	C4'	H3'	122.8°	118.7°
C2'	C3'	O3'	HO3'	180.0°	61.5°
C2'	C3'	C4'	O4'	41.3°	24.0°
C2'	C3'	C4'	C5'	161.1°	142.9°
C2'	C3'	C4'	H4'	83.4°	94.8°
F2'	C2'	C3'	O3'	42.7°	0.0°
F2'	C2'	C3'	C4'	77.5°	118.6°
F2'	C2'	C3'	H3'	159.1°	122.6°
H2'	C2'	C3'	O3'	74.9°	122.7°
H2'	C2'	C3'	C4'	164.9°	118.7°
H2'	C2'	C3'	H3'	41.5°	0.0°
O3'	C3'	C4'	H3'	116.3°	122.6°
O3'	C3'	C4'	O4'	162.2°	142.6°
O3'	C3'	C4'	C5'	78.0°	98.4°
O3'	C3'	C4'	H4'	37.6°	23.8°
C4'	C3'	O3'	HO3'	67.1°	176.1°
C3'	C4'	O4'	C5'	125.3°	118.9°
C3'	C4'	O4'	H4'	119.1°	118.8°
C3'	C4'	C5'	H4'	118.9°	122.3°
C3'	C4'	C5'	O5'	57.6°	175.0°
C3'	C4'	C5'	H5'	177.6°	55.0°
C3'	C4'	C5'	H5'A	62.4°	65.0°
H3'	C3'	O3'	HO3'	56.8°	61.2°
H3'	C3'	C4'	O4'	81.5°	94.7°
H3'	C3'	C4'	C5'	38.3°	24.2°
H3'	C3'	C4'	H4'	153.9°	146.4°
O4'	C4'	C5'	H4'	124.6°	122.3°
O4'	C4'	C5'	O5'	58.9°	69.6°
O4'	C4'	C5'	H5'	61.1°	170.4°
O4'	C4'	C5'	H5'A	178.9°	50.4°
C4'	C5'	O5'	H5'	120.0°	120.0°
C4'	C5'	O5'	H5'A	120.0°	120.0°
C4'	C5'	H5'	H5'A	119.6°	120.0°
H4'	C4'	C5'	O5'	176.5°	52.7°
H4'	C4'	C5'	H5'	63.5°	67.3°
H4'	C4'	C5'	H5'A	56.5°	172.7°
O5'	C5'	H5'	H5'A	119.6°	119.9°

Definition date:	2010-04-13
Last modified:	2011-06-04
Release status:	REL
Processing site:	PDBJ
Derived from:	3AGV