CFZ
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
O2P | P | doub | 1.48Å | 1.49Å | |
P | O5' | sing | 1.61Å | 1.59Å | |
P | O1P | sing | 1.61Å | 1.49Å | |
P | O3P | sing | 1.61Å | 1.60Å | |
C6 | N1 | sing | 1.36Å | 1.37Å | |
C2 | N1 | sing | 1.35Å | 1.40Å | |
N1 | C1' | sing | 1.47Å | 1.47Å | |
N3 | C2 | sing | 1.33Å | 1.35Å | |
C2 | O2 | doub | 1.22Å | 1.24Å | |
C4 | N3 | doub | 1.33Å | 1.33Å | |
N4 | C4 | sing | 1.38Å | 1.33Å | |
C4 | C5 | sing | 1.41Å | 1.43Å | |
N4 | HN4 | sing | 0.97Å | 1.00Å | |
N4 | HN4A | sing | 0.97Å | 1.00Å | |
C5 | C6 | doub | 1.35Å | 1.34Å | |
C5 | H5 | sing | 1.08Å | 1.08Å | |
C6 | H6 | sing | 1.08Å | 1.08Å | |
C2' | C1' | sing | 1.54Å | 1.52Å | |
C1' | O4' | sing | 1.45Å | 1.42Å | |
C1' | H1' | sing | 1.09Å | 1.10Å | |
O1P | HO1P | sing | 0.97Å | 0.95Å | |
C3' | C2' | sing | 1.55Å | 1.53Å | |
C2' | F2' | sing | 1.40Å | 1.41Å | |
C2' | H2' | sing | 1.09Å | 1.10Å | |
C3' | O3' | sing | 1.43Å | 1.43Å | |
C3' | C4' | sing | 1.54Å | 1.52Å | |
C3' | H3' | sing | 1.09Å | 1.10Å | |
O3' | HO3' | sing | 0.97Å | 0.95Å | |
O3P | HO3P | sing | 0.97Å | 0.95Å | |
O4' | C4' | sing | 1.44Å | 1.46Å | |
C5' | C4' | sing | 1.53Å | 1.51Å | |
C4' | H4' | sing | 1.09Å | 1.10Å | |
O5' | C5' | sing | 1.43Å | 1.42Å | |
C5' | H5' | sing | 1.09Å | 1.10Å | |
C5' | H5'A | sing | 1.09Å | 1.10Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
O2P | P | O5' | 108.1° | 109.4° |
O2P | P | O1P | 120.0° | 109.5° |
O2P | P | O3P | 108.6° | 109.5° |
O5' | P | O1P | 108.7° | 109.5° |
O5' | P | O3P | 103.9° | 109.5° |
P | O5' | C5' | 120.3° | 123.0° |
O1P | P | O3P | 106.4° | 109.5° |
P | O1P | HO1P | 109.5° | 114.0° |
P | O3P | HO3P | 109.5° | 113.9° |
C6 | N1 | C2 | 120.3° | 120.4° |
C6 | N1 | C1' | 120.9° | 119.8° |
N1 | C6 | C5 | 121.0° | 119.3° |
N1 | C6 | H6 | 119.5° | 120.4° |
C2 | N1 | C1' | 118.8° | 119.8° |
N1 | C2 | N3 | 119.3° | 121.0° |
N1 | C2 | O2 | 119.0° | 119.5° |
N1 | C1' | C2' | 113.3° | 110.4° |
N1 | C1' | O4' | 108.7° | 110.4° |
N1 | C1' | H1' | 106.4° | 110.3° |
N3 | C2 | O2 | 121.7° | 119.5° |
C2 | N3 | C4 | 120.0° | 120.7° |
N3 | C4 | N4 | 117.9° | 120.2° |
N3 | C4 | C5 | 121.9° | 119.6° |
N4 | C4 | C5 | 120.2° | 120.2° |
C4 | N4 | HN4 | 120.0° | 120.1° |
C4 | N4 | HN4A | 120.0° | 120.0° |
C4 | C5 | C6 | 117.4° | 119.0° |
C4 | C5 | H5 | 121.3° | 120.5° |
HN4 | N4 | HN4A | 120.0° | 119.9° |
C6 | C5 | H5 | 121.3° | 120.5° |
C5 | C6 | H6 | 119.5° | 120.4° |
C2' | C1' | O4' | 105.9° | 104.8° |
C2' | C1' | H1' | 109.1° | 110.5° |
C1' | C2' | C3' | 101.5° | 104.1° |
C1' | C2' | F2' | 112.1° | 110.5° |
C1' | C2' | H2' | 113.7° | 110.5° |
O4' | C1' | H1' | 113.7° | 110.4° |
C1' | O4' | C4' | 109.7° | 105.3° |
C3' | C2' | F2' | 111.6° | 110.5° |
C3' | C2' | H2' | 114.3° | 110.6° |
C2' | C3' | O3' | 113.5° | 110.5° |
C2' | C3' | C4' | 100.2° | 104.1° |
C2' | C3' | H3' | 114.1° | 110.5° |
F2' | C2' | H2' | 104.0° | 110.5° |
O3' | C3' | C4' | 112.5° | 110.5° |
O3' | C3' | H3' | 102.1° | 110.5° |
C3' | O3' | HO3' | 109.5° | 113.9° |
C4' | C3' | H3' | 115.0° | 110.6° |
C3' | C4' | O4' | 102.9° | 104.8° |
C3' | C4' | C5' | 117.3° | 110.4° |
C3' | C4' | H4' | 108.7° | 110.4° |
O4' | C4' | C5' | 109.1° | 110.4° |
O4' | C4' | H4' | 116.9° | 110.4° |
C5' | C4' | H4' | 102.4° | 110.4° |
C4' | C5' | O5' | 110.4° | 109.5° |
C4' | C5' | H5' | 109.2° | 109.5° |
C4' | C5' | H5'A | 109.2° | 109.5° |
O5' | C5' | H5' | 109.2° | 109.5° |
O5' | C5' | H5'A | 109.2° | 109.4° |
H5' | C5' | H5'A | 109.7° | 109.5° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
O2P | P | O5' | O1P | 131.8° | 120.0° |
O2P | P | O5' | O3P | 115.2° | 120.0° |
O2P | P | O1P | O3P | 123.5° | 120.0° |
O2P | P | O1P | HO1P | 0.0° | 60.0° |
O2P | P | O3P | HO3P | 0.0° | 180.0° |
O2P | P | O5' | C5' | 173.6° | 55.0° |
O5' | P | O1P | O3P | 111.4° | 120.0° |
O5' | P | O1P | HO1P | 125.1° | 180.0° |
O5' | P | O3P | HO3P | 114.9° | 60.0° |
P | O5' | C5' | C4' | 165.9° | 180.0° |
P | O5' | C5' | H5' | 45.9° | 60.0° |
P | O5' | C5' | H5'A | 74.0° | 60.0° |
O1P | P | O3P | HO3P | 130.4° | 60.0° |
O1P | P | O5' | C5' | 41.8° | 175.0° |
O3P | P | O1P | HO1P | 123.6° | 60.0° |
O3P | P | O5' | C5' | 71.2° | 65.0° |
C6 | N1 | C2 | C1' | 179.5° | 179.7° |
C6 | N1 | C2 | N3 | 1.2° | 0.3° |
C6 | N1 | C2 | O2 | 178.7° | 179.8° |
N1 | C6 | C5 | C4 | 0.1° | 0.6° |
N1 | C6 | C5 | H6 | 180.0° | 179.5° |
N1 | C6 | C5 | H5 | 180.0° | 179.7° |
C6 | N1 | C1' | C2' | 103.1° | 117.9° |
C6 | N1 | C1' | O4' | 14.3° | 126.7° |
C6 | N1 | C1' | H1' | 137.0° | 4.5° |
N1 | C2 | N3 | O2 | 179.9° | 180.0° |
N1 | C2 | N3 | C4 | 0.5° | 0.1° |
C2 | N1 | C6 | C5 | 1.0° | 0.6° |
C2 | N1 | C6 | H6 | 179.0° | 180.0° |
C2 | N1 | C1' | C2' | 77.4° | 61.8° |
C2 | N1 | C1' | O4' | 165.2° | 53.6° |
C2 | N1 | C1' | H1' | 42.5° | 175.8° |
C1' | N1 | C2 | N3 | 178.3° | 179.9° |
C1' | N1 | C2 | O2 | 1.8° | 0.1° |
C1' | N1 | C6 | C5 | 178.5° | 179.7° |
C1' | N1 | C6 | H6 | 1.5° | 0.3° |
N1 | C1' | C2' | O4' | 119.0° | 118.8° |
N1 | C1' | C2' | H1' | 118.3° | 122.3° |
N1 | C1' | O4' | H1' | 118.2° | 122.2° |
N1 | C1' | C2' | C3' | 90.7° | 142.8° |
N1 | C1' | C2' | F2' | 150.1° | 98.6° |
N1 | C1' | C2' | H2' | 32.5° | 24.0° |
N1 | C1' | O4' | C4' | 119.7° | 159.4° |
C2 | N3 | C4 | N4 | 179.4° | 180.0° |
C2 | N3 | C4 | C5 | 0.4° | 0.0° |
O2 | C2 | N3 | C4 | 179.4° | 179.9° |
N3 | C4 | N4 | C5 | 179.9° | 179.9° |
N3 | C4 | N4 | HN4 | 0.0° | 0.1° |
N3 | C4 | N4 | HN4A | 180.0° | 180.0° |
N3 | C4 | C5 | C6 | 0.7° | 0.3° |
N3 | C4 | C5 | H5 | 179.3° | 180.0° |
C4 | N4 | HN4 | HN4A | 180.0° | 180.0° |
N4 | C4 | C5 | C6 | 179.2° | 179.6° |
N4 | C4 | C5 | H5 | 0.8° | 0.1° |
C5 | C4 | N4 | HN4 | 179.9° | 180.0° |
C5 | C4 | N4 | HN4A | 0.1° | 0.1° |
C4 | C5 | C6 | H5 | 180.0° | 179.7° |
C4 | C5 | C6 | H6 | 179.9° | 180.0° |
H5 | C5 | C6 | H6 | 0.1° | 0.3° |
C2' | C1' | O4' | H1' | 119.8° | 119.0° |
C1' | C2' | C3' | F2' | 119.6° | 118.6° |
C1' | C2' | C3' | H2' | 122.8° | 118.7° |
C1' | C2' | F2' | H2' | 123.3° | 122.6° |
C1' | C2' | C3' | O3' | 162.3° | 118.6° |
C1' | C2' | C3' | C4' | 42.1° | 0.0° |
C1' | C2' | C3' | H3' | 81.3° | 118.8° |
C2' | C1' | O4' | C4' | 2.3° | 40.5° |
O4' | C1' | C2' | C3' | 28.3° | 24.0° |
O4' | C1' | C2' | F2' | 90.9° | 142.6° |
O4' | C1' | C2' | H2' | 151.5° | 94.8° |
C1' | O4' | C4' | C3' | 24.9° | 40.5° |
C1' | O4' | C4' | C5' | 150.2° | 159.4° |
C1' | O4' | C4' | H4' | 94.2° | 78.3° |
H1' | C1' | C2' | C3' | 151.0° | 94.9° |
H1' | C1' | C2' | F2' | 31.9° | 23.7° |
H1' | C1' | C2' | H2' | 85.8° | 146.3° |
H1' | C1' | O4' | C4' | 122.1° | 78.4° |
C3' | C2' | F2' | H2' | 123.6° | 122.7° |
C2' | C3' | O3' | C4' | 112.9° | 114.6° |
C2' | C3' | O3' | H3' | 123.2° | 122.7° |
C2' | C3' | C4' | H3' | 122.8° | 118.7° |
C2' | C3' | O3' | HO3' | 180.0° | 61.5° |
C2' | C3' | C4' | O4' | 41.3° | 24.0° |
C2' | C3' | C4' | C5' | 161.1° | 142.9° |
C2' | C3' | C4' | H4' | 83.4° | 94.8° |
F2' | C2' | C3' | O3' | 42.7° | 0.0° |
F2' | C2' | C3' | C4' | 77.5° | 118.6° |
F2' | C2' | C3' | H3' | 159.1° | 122.6° |
H2' | C2' | C3' | O3' | 74.9° | 122.7° |
H2' | C2' | C3' | C4' | 164.9° | 118.7° |
H2' | C2' | C3' | H3' | 41.5° | 0.0° |
O3' | C3' | C4' | H3' | 116.3° | 122.6° |
O3' | C3' | C4' | O4' | 162.2° | 142.6° |
O3' | C3' | C4' | C5' | 78.0° | 98.4° |
O3' | C3' | C4' | H4' | 37.6° | 23.8° |
C4' | C3' | O3' | HO3' | 67.1° | 176.1° |
C3' | C4' | O4' | C5' | 125.3° | 118.9° |
C3' | C4' | O4' | H4' | 119.1° | 118.8° |
C3' | C4' | C5' | H4' | 118.9° | 122.3° |
C3' | C4' | C5' | O5' | 57.6° | 175.0° |
C3' | C4' | C5' | H5' | 177.6° | 55.0° |
C3' | C4' | C5' | H5'A | 62.4° | 65.0° |
H3' | C3' | O3' | HO3' | 56.8° | 61.2° |
H3' | C3' | C4' | O4' | 81.5° | 94.7° |
H3' | C3' | C4' | C5' | 38.3° | 24.2° |
H3' | C3' | C4' | H4' | 153.9° | 146.4° |
O4' | C4' | C5' | H4' | 124.6° | 122.3° |
O4' | C4' | C5' | O5' | 58.9° | 69.6° |
O4' | C4' | C5' | H5' | 61.1° | 170.4° |
O4' | C4' | C5' | H5'A | 178.9° | 50.4° |
C4' | C5' | O5' | H5' | 120.0° | 120.0° |
C4' | C5' | O5' | H5'A | 120.0° | 120.0° |
C4' | C5' | H5' | H5'A | 119.6° | 120.0° |
H4' | C4' | C5' | O5' | 176.5° | 52.7° |
H4' | C4' | C5' | H5' | 63.5° | 67.3° |
H4' | C4' | C5' | H5'A | 56.5° | 172.7° |
O5' | C5' | H5' | H5'A | 119.6° | 119.9° |