CFL

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O3P	P	sing	1.61Å	1.62Å
O3P	HO3P	sing	0.97Å	0.95Å
P	O1P	sing	1.61Å	1.48Å
P	O2P	doub	1.48Å	1.48Å
P	O5'	sing	1.61Å	1.62Å
O1P	HO1P	sing	0.97Å	0.95Å
O5'	C5'	sing	1.43Å	1.45Å
C5'	C4'	sing	1.53Å	1.53Å
C5'	H5'1	sing	1.09Å	1.10Å
C5'	H5'2	sing	1.09Å	1.10Å
C4'	O4'	sing	1.44Å	1.43Å
C4'	C3'	sing	1.54Å	1.53Å
C4'	H4'	sing	1.09Å	1.10Å
O4'	C1'	sing	1.44Å	1.43Å
C3'	O3'	sing	1.43Å	1.44Å
C3'	C2'	sing	1.55Å	1.50Å
C3'	H3'	sing	1.09Å	1.10Å
O3'	HO3'	sing	0.97Å	0.95Å
C2'	C1'	sing	1.54Å	1.53Å
C2'	F	sing	1.40Å	1.37Å
C2'	H2'	sing	1.09Å	1.10Å
C1'	N1	sing	1.47Å	1.48Å
C1'	H1'	sing	1.09Å	1.10Å
N1	C2	sing	1.35Å	1.39Å
N1	C6	sing	1.36Å	1.37Å
C2	O2	doub	1.22Å	1.23Å
C2	N3	sing	1.33Å	1.36Å
N3	C4	doub	1.33Å	1.34Å
C4	N4	sing	1.38Å	1.33Å
C4	C5	sing	1.41Å	1.42Å
N4	HN41	sing	0.97Å	1.00Å
N4	HN42	sing	0.97Å	1.00Å
C5	C6	doub	1.35Å	1.34Å
C5	H5	sing	1.08Å	1.08Å
C6	H6	sing	1.08Å	1.08Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
P	O3P	HO3P	109.5°	106.8°
O3P	P	O1P	107.9°	109.5°
O3P	P	O2P	107.8°	109.4°
O3P	P	O5'	103.3°	109.5°
O1P	P	O2P	119.9°	109.5°
O1P	P	O5'	108.5°	109.5°
P	O1P	HO1P	109.5°	106.8°
O2P	P	O5'	108.2°	109.5°
P	O5'	C5'	121.8°	106.8°
O5'	C5'	C4'	111.2°	109.5°
O5'	C5'	H5'1	108.9°	109.5°
O5'	C5'	H5'2	108.5°	109.5°
C4'	C5'	H5'1	108.9°	109.5°
C4'	C5'	H5'2	108.5°	109.5°
C5'	C4'	O4'	110.2°	110.4°
C5'	C4'	C3'	111.5°	110.4°
C5'	C4'	H4'	106.8°	110.3°
H5'1	C5'	H5'2	110.8°	109.4°
O4'	C4'	C3'	107.1°	104.8°
O4'	C4'	H4'	111.3°	110.4°
C4'	O4'	C1'	108.0°	105.3°
C3'	C4'	H4'	110.0°	110.4°
C4'	C3'	O3'	111.3°	110.5°
C4'	C3'	C2'	105.7°	104.1°
C4'	C3'	H3'	111.4°	110.6°
O4'	C1'	C2'	106.9°	104.9°
O4'	C1'	N1	109.4°	110.4°
O4'	C1'	H1'	111.9°	110.4°
O3'	C3'	C2'	111.2°	110.5°
O3'	C3'	H3'	105.9°	110.5°
C3'	O3'	HO3'	109.5°	106.8°
C2'	C3'	H3'	111.5°	110.6°
C3'	C2'	C1'	105.1°	104.0°
C3'	C2'	F	110.4°	110.5°
C3'	C2'	H2'	112.2°	110.5°
C1'	C2'	F	111.1°	110.5°
C1'	C2'	H2'	111.6°	110.7°
C2'	C1'	N1	111.6°	110.4°
C2'	C1'	H1'	109.7°	110.4°
F	C2'	H2'	106.5°	110.5°
N1	C1'	H1'	107.3°	110.3°
C1'	N1	C2	118.4°	119.8°
C1'	N1	C6	120.5°	119.9°
C2	N1	C6	121.1°	120.4°
N1	C2	O2	120.5°	119.5°
N1	C2	N3	118.1°	121.1°
N1	C6	C5	120.7°	119.3°
N1	C6	H6	119.7°	120.3°
O2	C2	N3	121.4°	119.4°
C2	N3	C4	121.0°	120.7°
N3	C4	N4	119.4°	120.2°
N3	C4	C5	121.2°	119.6°
N4	C4	C5	119.4°	120.2°
C4	N4	HN41	109.4°	119.9°
C4	N4	HN42	125.3°	120.0°
C4	C5	C6	117.9°	119.0°
C4	C5	H5	121.0°	120.5°
HN41	N4	HN42	125.3°	120.0°
C6	C5	H5	121.0°	120.5°
C5	C6	H6	119.7°	120.4°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O3P	P	O1P	O2P	123.8°	119.9°
O3P	P	O1P	O5'	111.3°	120.0°
O3P	P	O2P	O5'	111.1°	120.0°
O3P	P	O1P	HO1P	17.1°	60.0°
O3P	P	O5'	C5'	87.5°	65.0°
HO3P	O3P	P	O1P	69.1°	60.0°
HO3P	O3P	P	O2P	160.1°	180.0°
HO3P	O3P	P	O5'	45.7°	60.0°
O1P	P	O2P	O5'	125.0°	120.1°
O1P	P	O5'	C5'	26.9°	175.0°
O2P	P	O1P	HO1P	140.9°	60.0°
O2P	P	O5'	C5'	158.4°	55.0°
O5'	P	O1P	HO1P	94.2°	180.0°
P	O5'	C5'	C4'	178.1°	180.0°
P	O5'	C5'	H5'1	61.9°	60.0°
P	O5'	C5'	H5'2	58.8°	60.0°
O5'	C5'	C4'	H5'1	120.0°	120.0°
O5'	C5'	C4'	H5'2	119.3°	120.0°
O5'	C5'	H5'1	H5'2	119.3°	120.0°
O5'	C5'	C4'	O4'	45.0°	66.5°
O5'	C5'	C4'	C3'	73.8°	178.1°
O5'	C5'	C4'	H4'	166.0°	55.8°
C4'	C5'	H5'1	H5'2	119.3°	120.0°
C5'	C4'	O4'	C3'	121.5°	118.9°
C5'	C4'	O4'	H4'	118.3°	122.2°
C5'	C4'	C3'	H4'	118.3°	122.2°
C5'	C4'	O4'	C1'	146.9°	159.5°
C5'	C4'	C3'	O3'	105.3°	98.4°
C5'	C4'	C3'	C2'	134.0°	143.0°
C5'	C4'	C3'	H3'	12.7°	24.2°
H5'1	C5'	C4'	O4'	165.0°	173.5°
H5'1	C5'	C4'	C3'	46.2°	58.1°
H5'1	C5'	C4'	H4'	74.0°	64.2°
H5'2	C5'	C4'	O4'	74.3°	53.6°
H5'2	C5'	C4'	C3'	166.9°	61.9°
H5'2	C5'	C4'	H4'	46.7°	175.9°
O4'	C4'	C3'	H4'	121.0°	118.9°
O4'	C4'	C3'	O3'	134.1°	142.7°
O4'	C4'	C3'	C2'	13.3°	24.1°
O4'	C4'	C3'	H3'	107.9°	94.7°
C4'	O4'	C1'	C2'	27.3°	40.4°
C4'	O4'	C1'	N1	148.4°	159.4°
C4'	O4'	C1'	H1'	92.8°	78.5°
C3'	C4'	O4'	C1'	25.5°	40.5°
C4'	C3'	O3'	C2'	117.5°	114.6°
C4'	C3'	O3'	H3'	121.2°	122.7°
C4'	C3'	C2'	H3'	121.2°	118.7°
C4'	C3'	O3'	HO3'	148.7°	180.0°
C4'	C3'	C2'	C1'	2.8°	0.2°
C4'	C3'	C2'	F	117.1°	118.8°
C4'	C3'	C2'	H2'	124.3°	118.6°
H4'	C4'	O4'	C1'	94.8°	78.3°
H4'	C4'	C3'	O3'	13.1°	23.9°
H4'	C4'	C3'	C2'	107.7°	94.8°
H4'	C4'	C3'	H3'	131.0°	146.5°
O4'	C1'	C2'	C3'	18.1°	23.8°
O4'	C1'	C2'	N1	119.6°	118.9°
O4'	C1'	C2'	H1'	121.6°	118.9°
O4'	C1'	C2'	F	101.3°	94.8°
O4'	C1'	C2'	H2'	140.0°	142.5°
O4'	C1'	N1	H1'	121.6°	122.2°
O4'	C1'	N1	C2	136.1°	52.0°
O4'	C1'	N1	C6	43.8°	128.0°
O3'	C3'	C2'	H3'	118.0°	122.6°
O3'	C3'	C2'	C1'	118.0°	118.8°
O3'	C3'	C2'	F	122.1°	122.6°
O3'	C3'	C2'	H2'	3.5°	0.0°
C2'	C3'	O3'	HO3'	93.8°	65.3°
C3'	C2'	C1'	F	119.4°	118.6°
C3'	C2'	C1'	H2'	121.9°	118.7°
C3'	C2'	F	H2'	122.1°	122.6°
C3'	C2'	C1'	N1	137.7°	142.7°
C3'	C2'	C1'	H1'	103.5°	95.0°
H3'	C3'	O3'	HO3'	27.4°	57.4°
H3'	C3'	C2'	C1'	124.0°	118.6°
H3'	C3'	C2'	F	4.1°	0.1°
H3'	C3'	C2'	H2'	114.5°	122.7°
C1'	C2'	F	H2'	121.7°	122.8°
C2'	C1'	N1	H1'	120.2°	122.3°
C2'	C1'	N1	C2	105.7°	63.5°
C2'	C1'	N1	C6	74.4°	116.5°
F	C2'	C1'	N1	18.3°	24.1°
F	C2'	C1'	H1'	137.1°	146.3°
H2'	C2'	C1'	N1	100.4°	98.6°
H2'	C2'	C1'	H1'	18.4°	23.6°
C1'	N1	C2	C6	179.9°	180.0°
C1'	N1	C2	O2	0.1°	0.0°
C1'	N1	C2	N3	179.8°	180.0°
C1'	N1	C6	C5	180.0°	179.7°
C1'	N1	C6	H6	0.0°	0.0°
H1'	C1'	N1	C2	14.5°	174.3°
H1'	C1'	N1	C6	165.4°	5.7°
N1	C2	O2	N3	179.8°	180.0°
N1	C2	N3	C4	0.1°	0.0°
C2	N1	C6	C5	0.1°	0.3°
C2	N1	C6	H6	179.9°	180.0°
C6	N1	C2	O2	179.9°	180.0°
C6	N1	C2	N3	0.1°	0.0°
N1	C6	C5	C4	0.3°	0.6°
N1	C6	C5	H6	180.0°	179.7°
N1	C6	C5	H5	179.7°	180.0°
O2	C2	N3	C4	180.0°	180.0°
C2	N3	C4	N4	179.5°	179.9°
C2	N3	C4	C5	0.0°	0.3°
N3	C4	N4	C5	179.6°	179.6°
N3	C4	N4	HN41	0.5°	0.1°
N3	C4	N4	HN42	179.6°	179.7°
N3	C4	C5	C6	0.2°	0.6°
N3	C4	C5	H5	179.7°	180.0°
C4	N4	HN41	HN42	180.0°	179.7°
N4	C4	C5	C6	179.3°	179.7°
N4	C4	C5	H5	0.7°	0.4°
C5	C4	N4	HN41	180.0°	179.7°
C5	C4	N4	HN42	0.0°	0.6°
C4	C5	C6	H5	180.0°	179.4°
C4	C5	C6	H6	179.7°	179.7°
H5	C5	C6	H6	0.3°	0.4°

Definition date:	2006-09-07
Last modified:	2020-06-17
Release status:	REL
Processing site:	RCSB