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Summary Geometry Related PDB entries

CE7

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O1	C	sing	1.43Å	1.43Å
O	C	sing	1.43Å	1.44Å
C	CA	sing	1.53Å	1.54Å
CA	N	sing	1.47Å	1.47Å
CA	CB	sing	1.53Å	1.52Å
CB	CG	sing	1.51Å	1.48Å
CG	OD1	doub	1.21Å	1.21Å
CG	ND2	sing	1.35Å	1.32Å
CB	HB2	sing	1.09Å	1.10Å
CB	HB3	sing	1.09Å	1.10Å
ND2	HD21	sing	0.97Å	1.00Å
ND2	HD22	sing	0.97Å	1.00Å
CA	HA	sing	1.09Å	1.10Å
O	H6	sing	0.97Å	0.95Å
O1	H7	sing	0.97Å	0.95Å
N	H	sing	1.01Å	1.00Å
C	OXT	sing	1.43Å	41.84Å
N	H2	sing	1.01Å	1.00Å
OXT	HXT	sing	0.97Å	0.00Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O1	C	O	101.5°	109.5°
O1	C	CA	103.9°	109.5°
C	O1	H7	109.5°	114.0°
O1	C	OXT	152.5°	109.5°
O	C	CA	108.3°	109.5°
C	O	H6	109.5°	114.0°
O	C	OXT	73.0°	109.5°
C	CA	N	104.3°	109.5°
C	CA	CB	112.2°	109.5°
C	CA	HA	109.0°	109.5°
CA	C	OXT	103.4°	109.5°
N	CA	CB	112.0°	109.5°
N	CA	HA	109.9°	109.4°
CA	N	H	109.5°	111.0°
CA	N	H2	109.5°	111.0°
CA	CB	CG	110.9°	109.5°
CA	CB	HB2	109.1°	109.4°
CA	CB	HB3	109.1°	109.5°
CB	CA	HA	109.2°	109.4°
CB	CG	OD1	120.8°	120.0°
CB	CG	ND2	113.7°	120.0°
CG	CB	HB2	109.1°	109.5°
CG	CB	HB3	109.1°	109.5°
OD1	CG	ND2	125.5°	120.0°
CG	ND2	HD21	120.0°	120.0°
CG	ND2	HD22	120.0°	120.0°
HB2	CB	HB3	109.5°	109.4°
HD21	ND2	HD22	120.0°	120.0°
H	N	H2	109.5°	111.0°
C	OXT	HXT	90.0°	114.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O1	C	O	CA	109.0°	120.0°
O1	C	O	OXT	152.1°	120.0°
O1	C	CA	OXT	176.4°	120.0°
O1	C	CA	N	86.3°	180.0°
O1	C	CA	CB	152.2°	60.0°
O1	C	CA	HA	31.1°	60.0°
O1	C	O	H6	180.0°	180.0°
O1	C	OXT	HXT	90.0°	60.0°
O	C	CA	OXT	76.2°	120.0°
O	C	CA	N	166.4°	60.0°
O	C	CA	CB	44.9°	180.0°
O	C	CA	HA	76.2°	60.0°
O	C	O1	H7	180.0°	180.0°
O	C	OXT	HXT	90.0°	60.0°
C	CA	N	CB	121.6°	120.1°
C	CA	N	HA	116.8°	120.0°
C	CA	CB	HA	121.0°	120.0°
C	CA	CB	CG	179.0°	175.0°
C	CA	CB	HB2	60.8°	65.0°
C	CA	CB	HB3	58.8°	55.0°
CA	C	O	H6	71.0°	60.0°
CA	C	O1	H7	67.7°	60.0°
C	CA	N	H	180.0°	63.9°
C	CA	N	H2	60.0°	60.0°
CA	C	OXT	HXT	90.0°	180.0°
N	CA	CB	HA	122.1°	119.9°
N	CA	CB	CG	64.0°	65.0°
N	CA	CB	HB2	56.2°	55.1°
N	CA	CB	HB3	175.7°	175.0°
CA	N	H	H2	120.0°	124.0°
N	CA	C	OXT	90.1°	60.0°
CA	CB	CG	HB2	120.2°	120.0°
CA	CB	CG	HB3	120.2°	120.0°
CA	CB	CG	OD1	56.8°	0.0°
CA	CB	CG	ND2	123.2°	180.0°
CA	CB	HB2	HB3	119.3°	120.0°
CB	CA	N	H	58.4°	176.0°
CB	CA	C	OXT	31.3°	60.0°
CB	CA	N	H2	178.4°	60.0°
CB	CG	OD1	ND2	180.0°	180.0°
CG	CB	HB2	HB3	119.4°	120.0°
CB	CG	ND2	HD21	180.0°	0.0°
CB	CG	ND2	HD22	0.0°	180.0°
CG	CB	CA	HA	58.0°	54.9°
OD1	CG	CB	HB2	177.0°	120.0°
OD1	CG	CB	HB3	63.4°	120.0°
OD1	CG	ND2	HD21	0.0°	180.0°
OD1	CG	ND2	HD22	180.0°	0.0°
ND2	CG	CB	HB2	3.0°	60.0°
ND2	CG	CB	HB3	116.6°	60.0°
CG	ND2	HD21	HD22	180.0°	180.0°
HB2	CB	CA	HA	178.2°	175.0°
HB3	CB	CA	HA	62.2°	65.1°
HA	CA	N	H	63.3°	56.1°
HA	CA	C	OXT	152.4°	180.0°
HA	CA	N	H2	56.8°	179.9°
H6	O	C	OXT	27.8°	60.0°
H7	O1	C	OXT	104.8°	60.0°

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PDB entries from 2024-08-07

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