CDY
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O5' | C5' | sing | 1.43Å | 1.42Å | |
| O5' | HO5 | sing | 0.97Å | 0.95Å | |
| C5' | C4' | sing | 1.53Å | 1.53Å | |
| C5' | HC51 | sing | 1.09Å | 1.12Å | |
| C5' | HC52 | sing | 1.09Å | 1.11Å | |
| C4' | O4' | sing | 1.44Å | 1.46Å | |
| C4' | C3' | sing | 1.55Å | 1.51Å | |
| C4' | H4' | sing | 1.09Å | 1.12Å | |
| O4' | C1' | sing | 1.44Å | 1.47Å | |
| C3' | C2' | sing | 1.55Å | 1.50Å | |
| C3' | HC31 | sing | 1.09Å | 1.11Å | |
| C3' | HC32 | sing | 1.09Å | 1.12Å | |
| C2' | C1' | sing | 1.54Å | 1.54Å | |
| C2' | HC21 | sing | 1.09Å | 1.11Å | |
| C2' | HC22 | sing | 1.09Å | 1.11Å | |
| C1' | N9 | sing | 1.46Å | 1.48Å | |
| C1' | H1' | sing | 1.09Å | 1.12Å | |
| N9 | C8 | sing | 1.36Å | 1.35Å | Aromatic |
| N9 | C4 | sing | 1.37Å | 1.32Å | Aromatic |
| C8 | N7 | doub | 1.30Å | 1.34Å | Aromatic |
| C8 | HC8 | sing | 1.08Å | 1.10Å | |
| N7 | C5 | sing | 1.35Å | 1.33Å | Aromatic |
| C5 | C4 | doub | 1.40Å | 1.38Å | Aromatic |
| C5 | C6 | sing | 1.41Å | 1.39Å | Aromatic |
| C4 | N3 | sing | 1.33Å | 1.35Å | Aromatic |
| N3 | C2 | doub | 1.32Å | 1.35Å | Aromatic |
| C2 | CL | sing | 1.74Å | 1.77Å | |
| C2 | N1 | sing | 1.32Å | 1.36Å | Aromatic |
| N1 | C6 | doub | 1.33Å | 1.36Å | Aromatic |
| C6 | N6 | sing | 1.38Å | 1.33Å | |
| N6 | HN61 | sing | 0.97Å | 1.02Å | |
| N6 | HN62 | sing | 0.97Å | 1.02Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| C5' | O5' | HO5 | 109.8° | 106.8° |
| O5' | C5' | C4' | 109.8° | 109.4° |
| O5' | C5' | HC51 | 112.1° | 109.4° |
| O5' | C5' | HC52 | 112.1° | 109.4° |
| C4' | C5' | HC51 | 112.1° | 109.6° |
| C4' | C5' | HC52 | 112.1° | 109.5° |
| C5' | C4' | O4' | 114.7° | 110.7° |
| C5' | C4' | C3' | 114.2° | 110.5° |
| C5' | C4' | H4' | 100.8° | 110.6° |
| HC51 | C5' | HC52 | 98.4° | 109.5° |
| O4' | C4' | C3' | 104.6° | 103.5° |
| O4' | C4' | H4' | 111.2° | 110.8° |
| C4' | O4' | C1' | 107.4° | 107.0° |
| C3' | C4' | H4' | 111.6° | 110.6° |
| C4' | C3' | C2' | 101.6° | 102.1° |
| C4' | C3' | HC31 | 115.2° | 110.9° |
| C4' | C3' | HC32 | 115.2° | 111.0° |
| O4' | C1' | C2' | 105.6° | 107.3° |
| O4' | C1' | N9 | 109.2° | 109.9° |
| O4' | C1' | H1' | 112.3° | 110.0° |
| C2' | C3' | HC31 | 115.2° | 110.9° |
| C2' | C3' | HC32 | 115.2° | 110.9° |
| C3' | C2' | C1' | 104.1° | 104.2° |
| C3' | C2' | HC21 | 114.2° | 110.5° |
| C3' | C2' | HC22 | 114.3° | 110.5° |
| HC31 | C3' | HC32 | 95.3° | 110.8° |
| C1' | C2' | HC21 | 114.2° | 110.5° |
| C1' | C2' | HC22 | 114.2° | 110.5° |
| C2' | C1' | N9 | 109.9° | 109.9° |
| C2' | C1' | H1' | 111.7° | 109.9° |
| HC21 | C2' | HC22 | 96.2° | 110.5° |
| N9 | C1' | H1' | 108.2° | 109.8° |
| C1' | N9 | C8 | 127.2° | 126.3° |
| C1' | N9 | C4 | 124.9° | 126.3° |
| C8 | N9 | C4 | 107.9° | 107.5° |
| N9 | C8 | N7 | 108.9° | 110.0° |
| N9 | C8 | HC8 | 125.7° | 125.0° |
| N9 | C4 | C5 | 107.6° | 106.0° |
| N9 | C4 | N3 | 132.0° | 134.9° |
| N7 | C8 | HC8 | 125.3° | 125.0° |
| C8 | N7 | C5 | 107.9° | 109.4° |
| N7 | C5 | C4 | 107.7° | 107.2° |
| N7 | C5 | C6 | 133.8° | 134.7° |
| C4 | C5 | C6 | 118.6° | 118.2° |
| C5 | C4 | N3 | 120.3° | 119.1° |
| C5 | C6 | N1 | 119.3° | 118.5° |
| C5 | C6 | N6 | 120.3° | 120.7° |
| C4 | N3 | C2 | 120.7° | 120.6° |
| N3 | C2 | CL | 119.3° | 118.7° |
| N3 | C2 | N1 | 120.3° | 122.5° |
| CL | C2 | N1 | 120.5° | 118.8° |
| C2 | N1 | C6 | 120.8° | 121.1° |
| N1 | C6 | N6 | 120.4° | 120.8° |
| C6 | N6 | HN61 | 108.3° | 120.0° |
| C6 | N6 | HN62 | 120.3° | 120.0° |
| HN61 | N6 | HN62 | 108.4° | 120.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O5' | C5' | C4' | HC51 | 125.2° | 120.0° |
| O5' | C5' | C4' | HC52 | 125.3° | 119.9° |
| O5' | C5' | HC51 | HC52 | 118.0° | 119.8° |
| O5' | C5' | C4' | O4' | 67.7° | 65.9° |
| O5' | C5' | C4' | C3' | 52.9° | 180.0° |
| O5' | C5' | C4' | H4' | 172.8° | 57.3° |
| HO5 | O5' | C5' | C4' | 180.0° | 180.0° |
| HO5 | O5' | C5' | HC51 | 54.7° | 59.9° |
| HO5 | O5' | C5' | HC52 | 54.7° | 60.0° |
| C4' | C5' | HC51 | HC52 | 118.0° | 120.1° |
| C5' | C4' | O4' | C3' | 125.8° | 118.4° |
| C5' | C4' | O4' | H4' | 113.5° | 123.1° |
| C5' | C4' | C3' | H4' | 113.6° | 122.8° |
| C5' | C4' | O4' | C1' | 155.8° | 158.5° |
| C5' | C4' | C3' | C2' | 167.0° | 155.6° |
| C5' | C4' | C3' | HC31 | 67.8° | 86.2° |
| C5' | C4' | C3' | HC32 | 41.7° | 37.4° |
| HC51 | C5' | C4' | O4' | 57.5° | 174.1° |
| HC51 | C5' | C4' | C3' | 178.2° | 60.0° |
| HC51 | C5' | C4' | H4' | 62.0° | 62.7° |
| HC52 | C5' | C4' | O4' | 167.0° | 53.9° |
| HC52 | C5' | C4' | C3' | 72.3° | 60.1° |
| HC52 | C5' | C4' | H4' | 47.5° | 177.1° |
| O4' | C4' | C3' | H4' | 120.3° | 118.7° |
| O4' | C4' | C3' | C2' | 40.8° | 37.0° |
| O4' | C4' | C3' | HC31 | 166.1° | 155.2° |
| O4' | C4' | C3' | HC32 | 84.4° | 81.2° |
| C4' | O4' | C1' | C2' | 7.0° | 26.5° |
| C4' | O4' | C1' | N9 | 125.1° | 146.0° |
| C4' | O4' | C1' | H1' | 114.9° | 93.0° |
| C3' | C4' | O4' | C1' | 29.9° | 40.1° |
| C4' | C3' | C2' | HC31 | 125.3° | 118.2° |
| C4' | C3' | C2' | HC32 | 125.2° | 118.3° |
| C4' | C3' | HC31 | HC32 | 121.0° | 123.7° |
| C4' | C3' | C2' | C1' | 35.8° | 20.9° |
| C4' | C3' | C2' | HC21 | 89.5° | 97.8° |
| C4' | C3' | C2' | HC22 | 161.1° | 139.6° |
| H4' | C4' | O4' | C1' | 90.7° | 78.4° |
| H4' | C4' | C3' | C2' | 79.4° | 81.7° |
| H4' | C4' | C3' | HC31 | 45.8° | 36.5° |
| H4' | C4' | C3' | HC32 | 155.3° | 160.2° |
| O4' | C1' | C2' | C3' | 18.6° | 2.0° |
| O4' | C1' | C2' | N9 | 117.6° | 119.4° |
| O4' | C1' | C2' | H1' | 122.3° | 119.5° |
| O4' | C1' | C2' | HC21 | 106.7° | 120.7° |
| O4' | C1' | C2' | HC22 | 143.8° | 116.7° |
| O4' | C1' | N9 | H1' | 122.5° | 121.1° |
| O4' | C1' | N9 | C8 | 22.8° | 27.9° |
| O4' | C1' | N9 | C4 | 158.0° | 152.2° |
| C2' | C3' | HC31 | HC32 | 121.1° | 123.6° |
| C3' | C2' | C1' | HC21 | 125.3° | 118.7° |
| C3' | C2' | C1' | HC22 | 125.3° | 118.7° |
| C3' | C2' | HC21 | HC22 | 120.2° | 122.6° |
| C3' | C2' | C1' | N9 | 99.0° | 121.4° |
| C3' | C2' | C1' | H1' | 140.9° | 117.5° |
| HC31 | C3' | C2' | C1' | 161.1° | 139.1° |
| HC31 | C3' | C2' | HC21 | 35.8° | 20.4° |
| HC31 | C3' | C2' | HC22 | 73.7° | 102.2° |
| HC32 | C3' | C2' | C1' | 89.4° | 97.4° |
| HC32 | C3' | C2' | HC21 | 145.3° | 144.0° |
| HC32 | C3' | C2' | HC22 | 35.8° | 21.3° |
| C1' | C2' | HC21 | HC22 | 120.1° | 122.6° |
| C2' | C1' | N9 | H1' | 122.1° | 121.1° |
| C2' | C1' | N9 | C8 | 92.5° | 89.9° |
| C2' | C1' | N9 | C4 | 86.7° | 90.0° |
| HC21 | C2' | C1' | N9 | 135.7° | 119.9° |
| HC21 | C2' | C1' | H1' | 15.6° | 1.2° |
| HC22 | C2' | C1' | N9 | 26.2° | 2.7° |
| HC22 | C2' | C1' | H1' | 93.8° | 123.8° |
| C1' | N9 | C8 | C4 | 179.3° | 179.9° |
| C1' | N9 | C8 | N7 | 179.1° | 180.0° |
| C1' | N9 | C8 | HC8 | 0.9° | 0.1° |
| C1' | N9 | C4 | C5 | 179.1° | 179.7° |
| C1' | N9 | C4 | N3 | 1.1° | 0.0° |
| H1' | C1' | N9 | C8 | 145.3° | 149.0° |
| H1' | C1' | N9 | C4 | 35.4° | 31.1° |
| N9 | C8 | N7 | HC8 | 180.0° | 179.9° |
| N9 | C8 | N7 | C5 | 0.0° | 0.3° |
| C8 | N9 | C4 | C5 | 0.3° | 0.2° |
| C8 | N9 | C4 | N3 | 179.6° | 180.0° |
| C4 | N9 | C8 | N7 | 0.2° | 0.0° |
| C4 | N9 | C8 | HC8 | 179.8° | 180.0° |
| N9 | C4 | C5 | N7 | 0.3° | 0.4° |
| N9 | C4 | C5 | N3 | 179.9° | 179.8° |
| N9 | C4 | C5 | C6 | 179.8° | 179.7° |
| N9 | C4 | N3 | C2 | 179.8° | 180.0° |
| C8 | N7 | C5 | C4 | 0.2° | 0.4° |
| C8 | N7 | C5 | C6 | 180.0° | 179.5° |
| HC8 | C8 | N7 | C5 | 179.9° | 179.8° |
| N7 | C5 | C4 | C6 | 179.9° | 179.3° |
| N7 | C5 | C4 | N3 | 179.6° | 179.8° |
| N7 | C5 | C6 | N1 | 179.4° | 179.6° |
| N7 | C5 | C6 | N6 | 2.2° | 0.7° |
| C5 | C4 | N3 | C2 | 0.1° | 0.3° |
| C4 | C5 | C6 | N1 | 0.5° | 0.5° |
| C4 | C5 | C6 | N6 | 177.9° | 179.7° |
| C6 | C5 | C4 | N3 | 0.3° | 0.5° |
| C5 | C6 | N1 | C2 | 0.3° | 0.3° |
| C5 | C6 | N1 | N6 | 178.4° | 179.7° |
| C5 | C6 | N6 | HN61 | 54.7° | 179.7° |
| C5 | C6 | N6 | HN62 | 180.0° | 0.5° |
| C4 | N3 | C2 | CL | 178.6° | 180.0° |
| C4 | N3 | C2 | N1 | 0.2° | 0.1° |
| N3 | C2 | CL | N1 | 178.8° | 179.9° |
| N3 | C2 | N1 | C6 | 0.0° | 0.1° |
| CL | C2 | N1 | C6 | 178.8° | 180.0° |
| C2 | N1 | C6 | N6 | 178.1° | 180.0° |
| N1 | C6 | N6 | HN61 | 123.7° | 0.0° |
| N1 | C6 | N6 | HN62 | 1.6° | 179.8° |
| C6 | N6 | HN61 | HN62 | 132.1° | 179.8° |
