CDP
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O3B | PB | sing | 1.61Å | 1.60Å | |
| PB | O1B | doub | 1.48Å | 1.45Å | |
| PB | O2B | sing | 1.61Å | 1.59Å | |
| PB | O3A | sing | 1.61Å | 1.62Å | |
| O3A | PA | sing | 1.61Å | 1.58Å | |
| PA | O1A | doub | 1.48Å | 1.49Å | |
| PA | O2A | sing | 1.61Å | 1.53Å | |
| PA | O5' | sing | 1.61Å | 1.59Å | |
| O5' | C5' | sing | 1.43Å | 1.42Å | |
| C5' | C4' | sing | 1.53Å | 1.53Å | |
| C5' | H5'1 | sing | 1.09Å | 1.10Å | |
| C5' | H5'2 | sing | 1.09Å | 1.10Å | |
| C4' | O4' | sing | 1.44Å | 1.41Å | |
| C4' | C3' | sing | 1.54Å | 1.54Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| O4' | C1' | sing | 1.44Å | 1.44Å | |
| C3' | O3' | sing | 1.43Å | 1.44Å | |
| C3' | C2' | sing | 1.55Å | 1.52Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| O3' | HA | sing | 0.97Å | 0.95Å | |
| C2' | O2' | sing | 1.43Å | 1.42Å | |
| C2' | C1' | sing | 1.55Å | 1.53Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| O2' | HB | sing | 0.97Å | 0.95Å | |
| C1' | N1 | sing | 1.46Å | 1.48Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| N1 | C2 | sing | 1.35Å | 1.40Å | |
| N1 | C6 | sing | 1.36Å | 1.36Å | |
| C2 | O2 | doub | 1.22Å | 1.23Å | |
| C2 | N3 | sing | 1.33Å | 1.36Å | |
| N3 | C4 | doub | 1.33Å | 1.37Å | |
| C4 | N4 | sing | 1.38Å | 1.33Å | |
| C4 | C5 | sing | 1.41Å | 1.43Å | |
| N4 | H4N1 | sing | 0.97Å | 1.00Å | |
| N4 | H4N2 | sing | 0.97Å | 1.00Å | |
| C5 | C6 | doub | 1.35Å | 1.40Å | |
| C5 | H5 | sing | 1.08Å | 1.08Å | |
| C6 | H6 | sing | 1.08Å | 1.08Å | |
| HO1 | O2A | sing | 0.97Å | 0.95Å | |
| HO2 | O2B | sing | 0.97Å | 0.95Å | |
| HO3 | O3B | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O3B | PB | O1B | 100.6° | 109.5° |
| O3B | PB | O2B | 106.8° | 109.4° |
| O3B | PB | O3A | 103.2° | 109.5° |
| PB | O3B | HO3 | 109.5° | 114.0° |
| O1B | PB | O2B | 119.1° | 109.5° |
| O1B | PB | O3A | 105.5° | 109.5° |
| O2B | PB | O3A | 119.0° | 109.5° |
| PB | O2B | HO2 | 109.5° | 114.0° |
| PB | O3A | PA | 136.1° | 134.0° |
| O3A | PA | O1A | 110.5° | 109.4° |
| O3A | PA | O2A | 118.6° | 109.5° |
| O3A | PA | O5' | 96.6° | 109.5° |
| O1A | PA | O2A | 114.3° | 109.5° |
| O1A | PA | O5' | 106.6° | 109.5° |
| O2A | PA | O5' | 108.0° | 109.5° |
| PA | O2A | HO1 | 109.5° | 114.0° |
| PA | O5' | C5' | 117.8° | 123.0° |
| O5' | C5' | C4' | 111.7° | 109.5° |
| O5' | C5' | H5'1 | 108.7° | 109.4° |
| O5' | C5' | H5'2 | 108.3° | 109.5° |
| C4' | C5' | H5'1 | 108.7° | 109.4° |
| C4' | C5' | H5'2 | 108.2° | 109.5° |
| C5' | C4' | O4' | 110.5° | 109.9° |
| C5' | C4' | C3' | 115.0° | 109.9° |
| C5' | C4' | H4' | 103.0° | 109.9° |
| H5'1 | C5' | H5'2 | 111.2° | 109.5° |
| O4' | C4' | C3' | 102.6° | 107.3° |
| O4' | C4' | H4' | 115.3° | 109.9° |
| C4' | O4' | C1' | 112.1° | 107.0° |
| C3' | C4' | H4' | 110.8° | 110.0° |
| C4' | C3' | O3' | 113.9° | 110.5° |
| C4' | C3' | C2' | 103.9° | 104.2° |
| C4' | C3' | H3' | 111.5° | 110.5° |
| O4' | C1' | C2' | 106.4° | 103.5° |
| O4' | C1' | N1 | 108.8° | 110.6° |
| O4' | C1' | H1' | 114.1° | 110.6° |
| O3' | C3' | C2' | 112.7° | 110.5° |
| O3' | C3' | H3' | 102.5° | 110.5° |
| C3' | O3' | HA | 109.5° | 114.0° |
| C2' | C3' | H3' | 112.7° | 110.6° |
| C3' | C2' | O2' | 106.3° | 110.9° |
| C3' | C2' | C1' | 101.6° | 102.1° |
| C3' | C2' | H2' | 116.5° | 110.9° |
| O2' | C2' | C1' | 110.0° | 110.9° |
| O2' | C2' | H2' | 108.9° | 110.8° |
| C2' | O2' | HB | 109.5° | 114.0° |
| C1' | C2' | H2' | 113.2° | 110.9° |
| C2' | C1' | N1 | 115.3° | 110.7° |
| C2' | C1' | H1' | 107.4° | 110.6° |
| N1 | C1' | H1' | 105.0° | 110.7° |
| C1' | N1 | C2 | 115.5° | 119.9° |
| C1' | N1 | C6 | 123.3° | 119.8° |
| C2 | N1 | C6 | 119.5° | 120.3° |
| N1 | C2 | O2 | 120.2° | 119.4° |
| N1 | C2 | N3 | 121.7° | 121.1° |
| N1 | C6 | C5 | 119.2° | 119.3° |
| N1 | C6 | H6 | 120.4° | 120.4° |
| O2 | C2 | N3 | 118.0° | 119.5° |
| C2 | N3 | C4 | 120.5° | 120.7° |
| N3 | C4 | N4 | 117.7° | 120.2° |
| N3 | C4 | C5 | 118.0° | 119.7° |
| N4 | C4 | C5 | 124.3° | 120.2° |
| C4 | N4 | H4N1 | 109.7° | 120.0° |
| C4 | N4 | H4N2 | 125.2° | 120.0° |
| C4 | C5 | C6 | 120.6° | 119.0° |
| C4 | C5 | H5 | 119.7° | 120.6° |
| H4N1 | N4 | H4N2 | 125.2° | 120.0° |
| C6 | C5 | H5 | 119.7° | 120.5° |
| C5 | C6 | H6 | 120.4° | 120.3° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O3B | PB | O1B | O2B | 116.1° | 120.0° |
| O3B | PB | O1B | O3A | 107.0° | 120.0° |
| O3B | PB | O2B | O3A | 116.2° | 120.0° |
| O3B | PB | O3A | PA | 122.5° | 80.0° |
| O3B | PB | O2B | HO2 | 57.5° | 60.0° |
| O1B | PB | O2B | O3A | 131.1° | 120.0° |
| O1B | PB | O3A | PA | 17.4° | 40.0° |
| O1B | PB | O2B | HO2 | 55.2° | 60.0° |
| O1B | PB | O3B | HO3 | 24.1° | 180.0° |
| O2B | PB | O3A | PA | 119.5° | 160.0° |
| O2B | PB | O3B | HO3 | 149.0° | 60.0° |
| PB | O3A | PA | O1A | 93.6° | 45.0° |
| PB | O3A | PA | O2A | 41.2° | 75.0° |
| PB | O3A | PA | O5' | 155.9° | 165.0° |
| O3A | PB | O2B | HO2 | 173.7° | 180.0° |
| O3A | PB | O3B | HO3 | 84.7° | 60.0° |
| O3A | PA | O1A | O2A | 136.9° | 120.0° |
| O3A | PA | O1A | O5' | 103.8° | 120.0° |
| O3A | PA | O2A | O5' | 108.3° | 120.0° |
| O3A | PA | O5' | C5' | 60.9° | 175.0° |
| O3A | PA | O2A | HO1 | 122.5° | 60.0° |
| O1A | PA | O2A | O5' | 118.5° | 120.0° |
| O1A | PA | O5' | C5' | 174.6° | 55.0° |
| O1A | PA | O2A | HO1 | 10.7° | 180.0° |
| O2A | PA | O5' | C5' | 62.1° | 65.0° |
| PA | O5' | C5' | C4' | 172.8° | 180.0° |
| PA | O5' | C5' | H5'1 | 52.8° | 60.0° |
| PA | O5' | C5' | H5'2 | 68.2° | 60.0° |
| O5' | PA | O2A | HO1 | 129.2° | 60.0° |
| O5' | C5' | C4' | H5'1 | 120.0° | 119.9° |
| O5' | C5' | C4' | H5'2 | 119.1° | 120.0° |
| O5' | C5' | H5'1 | H5'2 | 119.1° | 120.0° |
| O5' | C5' | C4' | O4' | 64.4° | 66.4° |
| O5' | C5' | C4' | C3' | 51.2° | 175.7° |
| O5' | C5' | C4' | H4' | 171.9° | 54.6° |
| C4' | C5' | H5'1 | H5'2 | 119.1° | 120.1° |
| C5' | C4' | O4' | C3' | 123.1° | 119.4° |
| C5' | C4' | O4' | H4' | 116.3° | 121.0° |
| C5' | C4' | C3' | H4' | 116.3° | 121.1° |
| C5' | C4' | O4' | C1' | 146.4° | 145.9° |
| C5' | C4' | C3' | O3' | 81.4° | 119.9° |
| C5' | C4' | C3' | C2' | 155.6° | 121.5° |
| C5' | C4' | C3' | H3' | 34.0° | 2.7° |
| H5'1 | C5' | C4' | O4' | 175.6° | 53.5° |
| H5'1 | C5' | C4' | C3' | 68.8° | 64.3° |
| H5'1 | C5' | C4' | H4' | 51.9° | 174.5° |
| H5'2 | C5' | C4' | O4' | 54.7° | 173.5° |
| H5'2 | C5' | C4' | C3' | 170.2° | 55.7° |
| H5'2 | C5' | C4' | H4' | 69.0° | 65.4° |
| O4' | C4' | C3' | H4' | 123.7° | 119.5° |
| O4' | C4' | C3' | O3' | 158.6° | 120.7° |
| O4' | C4' | C3' | C2' | 35.6° | 2.0° |
| O4' | C4' | C3' | H3' | 86.0° | 116.8° |
| C4' | O4' | C1' | C2' | 1.8° | 40.0° |
| C4' | O4' | C1' | N1 | 126.6° | 158.6° |
| C4' | O4' | C1' | H1' | 116.5° | 78.5° |
| C3' | C4' | O4' | C1' | 23.3° | 26.5° |
| C4' | C3' | O3' | C2' | 118.0° | 114.7° |
| C4' | C3' | O3' | H3' | 120.6° | 122.6° |
| C4' | C3' | C2' | H3' | 120.9° | 118.7° |
| C4' | C3' | O3' | HA | 38.7° | 180.0° |
| C4' | C3' | C2' | O2' | 81.1° | 139.1° |
| C4' | C3' | C2' | C1' | 34.0° | 20.9° |
| C4' | C3' | C2' | H2' | 157.4° | 97.4° |
| H4' | C4' | O4' | C1' | 97.3° | 93.1° |
| H4' | C4' | C3' | O3' | 34.9° | 1.2° |
| H4' | C4' | C3' | C2' | 88.0° | 117.5° |
| H4' | C4' | C3' | H3' | 150.3° | 123.7° |
| O4' | C1' | C2' | C3' | 20.6° | 37.0° |
| O4' | C1' | C2' | O2' | 91.7° | 155.2° |
| O4' | C1' | C2' | N1 | 120.7° | 118.5° |
| O4' | C1' | C2' | H1' | 122.6° | 118.4° |
| O4' | C1' | C2' | H2' | 146.2° | 81.2° |
| O4' | C1' | N1 | H1' | 122.6° | 122.9° |
| O4' | C1' | N1 | C2 | 126.8° | 53.6° |
| O4' | C1' | N1 | C6 | 38.4° | 126.7° |
| O3' | C3' | C2' | H3' | 115.4° | 122.6° |
| O3' | C3' | C2' | O2' | 42.6° | 20.5° |
| O3' | C3' | C2' | C1' | 157.7° | 97.8° |
| O3' | C3' | C2' | H2' | 78.9° | 144.0° |
| C2' | C3' | O3' | HA | 79.3° | 65.3° |
| C3' | C2' | O2' | C1' | 109.2° | 112.8° |
| C3' | C2' | O2' | H2' | 126.2° | 123.6° |
| C3' | C2' | C1' | H2' | 125.6° | 118.2° |
| C3' | C2' | O2' | HB | 89.3° | 61.4° |
| C3' | C2' | C1' | N1 | 100.1° | 155.5° |
| C3' | C2' | C1' | H1' | 143.2° | 81.4° |
| H3' | C3' | O3' | HA | 159.3° | 57.4° |
| H3' | C3' | C2' | O2' | 158.0° | 102.2° |
| H3' | C3' | C2' | C1' | 86.9° | 139.6° |
| H3' | C3' | C2' | H2' | 36.5° | 21.3° |
| O2' | C2' | C1' | H2' | 122.1° | 123.5° |
| O2' | C2' | C1' | N1 | 147.6° | 86.3° |
| O2' | C2' | C1' | H1' | 30.9° | 36.8° |
| C1' | C2' | O2' | HB | 20.0° | 174.1° |
| C2' | C1' | N1 | H1' | 118.0° | 123.0° |
| C2' | C1' | N1 | C2 | 113.8° | 60.5° |
| C2' | C1' | N1 | C6 | 81.0° | 119.2° |
| H2' | C2' | O2' | HB | 144.5° | 62.2° |
| H2' | C2' | C1' | N1 | 25.6° | 37.3° |
| H2' | C2' | C1' | H1' | 91.1° | 160.3° |
| C1' | N1 | C2 | C6 | 165.8° | 179.7° |
| C1' | N1 | C2 | O2 | 12.1° | 0.1° |
| C1' | N1 | C2 | N3 | 165.2° | 180.0° |
| C1' | N1 | C6 | C5 | 169.3° | 179.8° |
| C1' | N1 | C6 | H6 | 10.7° | 0.0° |
| H1' | C1' | N1 | C2 | 4.2° | 176.5° |
| H1' | C1' | N1 | C6 | 161.0° | 3.8° |
| N1 | C2 | O2 | N3 | 177.4° | 180.0° |
| N1 | C2 | N3 | C4 | 6.4° | 0.0° |
| C2 | N1 | C6 | C5 | 4.6° | 0.5° |
| C2 | N1 | C6 | H6 | 175.4° | 179.7° |
| C6 | N1 | C2 | O2 | 177.9° | 179.8° |
| C6 | N1 | C2 | N3 | 0.7° | 0.3° |
| N1 | C6 | C5 | C4 | 4.4° | 0.5° |
| N1 | C6 | C5 | H6 | 180.0° | 179.8° |
| N1 | C6 | C5 | H5 | 175.6° | 179.7° |
| O2 | C2 | N3 | C4 | 176.3° | 180.0° |
| C2 | N3 | C4 | N4 | 175.7° | 179.9° |
| C2 | N3 | C4 | C5 | 6.5° | 0.0° |
| N3 | C4 | N4 | C5 | 177.6° | 179.9° |
| N3 | C4 | N4 | H4N1 | 180.0° | 0.0° |
| N3 | C4 | N4 | H4N2 | 0.0° | 180.0° |
| N3 | C4 | C5 | C6 | 1.2° | 0.2° |
| N3 | C4 | C5 | H5 | 178.8° | 179.9° |
| C4 | N4 | H4N1 | H4N2 | 180.0° | 180.0° |
| N4 | C4 | C5 | C6 | 178.8° | 179.7° |
| N4 | C4 | C5 | H5 | 1.2° | 0.1° |
| C5 | C4 | N4 | H4N1 | 2.4° | 179.9° |
| C5 | C4 | N4 | H4N2 | 177.6° | 0.1° |
| C4 | C5 | C6 | H5 | 180.0° | 179.8° |
| C4 | C5 | C6 | H6 | 175.7° | 179.7° |
| H5 | C5 | C6 | H6 | 4.3° | 0.1° |
