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CDM

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
N1C2sing1.34Å1.43Å
N1C6sing1.36Å1.43Å
N1C1'sing1.46Å1.50Å
C2N3sing1.33Å1.36Å
C2O2doub1.22Å1.25Å
N3C4doub1.33Å1.44Å
C4C5sing1.41Å1.42Å
C4N4sing1.38Å1.35Å
C5C6doub1.35Å1.39Å
C5H5sing1.08Å1.10Å
C6H6sing1.08Å1.10Å
N4H41sing0.97Å1.02Å
N4H42sing0.97Å1.02Å
C1'C2'sing1.55Å1.51Å
C1'O4'sing1.44Å1.40Å
C1'H1'sing1.09Å1.12Å
C2'O2'sing1.43Å1.40Å
C2'C3'sing1.55Å1.52Å
C2'H2'sing1.09Å1.11Å
O2'HO'2sing0.97Å0.95Å
C3'C4'sing1.54Å1.55Å
C3'O3'sing1.43Å1.45Å
C3'H3'sing1.09Å1.11Å
C4'O4'sing1.44Å1.45Å
C4'C5'sing1.53Å1.52Å
C4'H4'sing1.09Å1.12Å
O3'H3Tsing0.97Å0.95Å
C5'O5'sing1.43Å1.40Å
C5'H5'1sing1.09Å1.12Å
C5'H5'2sing1.09Å1.12Å
O5'PAsing1.61Å1.63Å
PAO1Adoub1.48Å1.58Å
PAO2Asing1.61Å1.71Å
PAO3Asing1.61Å1.49Å
O2AHO2Asing0.97Å0.95Å
O3APBsing1.61Å1.50Å
PBO1Bsing1.61Å1.50Å
PBO2Bdoub1.48Å1.54Å
PBO3Bsing1.61Å1.50Å
O1BHO1Bsing0.97Å0.95Å
O3BC1Msing1.43Å1.42Å
C1MC2Msing1.53Å1.52Å
C1MH1M1sing1.09Å1.12Å
C1MH1M2sing1.09Å1.12Å
C2MO2Msing1.43Å1.52Å
C2MC3Msing1.53Å1.57Å
C2MH2M1sing1.09Å1.11Å
O2MH2M2sing0.97Å0.95Å
C3MC4Msing1.53Å1.51Å
C3MC5Msing1.53Å1.55Å
C3MO3Msing1.43Å1.51Å
C4MO4Msing1.43Å1.55Å
C4MH4M1sing1.09Å1.11Å
C4MH4M2sing1.09Å1.12Å
C5MH5M1sing1.09Å1.12Å
C5MH5M2sing1.09Å1.11Å
C5MH5M3sing1.09Å1.12Å
O3MH3Msing0.97Å0.95Å
O4MH4Msing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C2N1C6116.9°120.3°
C2N1C1'122.3°119.9°
N1C2N3120.6°121.1°
N1C2O2124.4°119.4°
C6N1C1'120.9°119.8°
N1C6C5125.1°119.3°
N1C6H6118.8°120.4°
N1C1'C2'111.3°110.7°
N1C1'O4'112.5°110.6°
N1C1'H1'104.8°110.6°
N3C2O2115.0°119.4°
C2N3C4120.4°120.7°
N3C4C5122.0°119.6°
N3C4N4117.6°120.2°
C5C4N4120.4°120.2°
C4C5C6115.1°119.0°
C4C5H5123.3°120.5°
C4N4H41117.6°120.0°
C4N4H42109.2°120.0°
C6C5H5121.6°120.5°
C5C6H6116.1°120.4°
H41N4H42109.4°120.0°
C2'C1'O4'104.7°103.5°
C2'C1'H1'112.5°110.6°
C1'C2'O2'108.3°110.9°
C1'C2'C3'103.8°102.1°
C1'C2'H2'116.9°110.9°
O4'C1'H1'111.3°110.6°
C1'O4'C4'107.8°106.9°
O2'C2'C3'117.3°110.8°
O2'C2'H2'103.3°110.8°
C2'O2'HO'2108.3°106.8°
C3'C2'H2'107.9°111.0°
C2'C3'C4'102.9°104.0°
C2'C3'O3'113.7°110.5°
C2'C3'H3'109.6°110.5°
C4'C3'O3'104.6°110.8°
C4'C3'H3'118.1°110.4°
C3'C4'O4'106.9°107.5°
C3'C4'C5'105.3°109.9°
C3'C4'H4'114.5°109.8°
O3'C3'H3'108.0°110.4°
C3'O3'H3T113.7°106.9°
O4'C4'C5'111.5°109.9°
O4'C4'H4'108.5°109.9°
C5'C4'H4'110.1°109.8°
C4'C5'O5'108.3°109.5°
C4'C5'H5'1112.7°109.4°
C4'C5'H5'2112.6°109.5°
O5'C5'H5'1112.7°109.5°
O5'C5'H5'2112.7°109.5°
C5'O5'PA124.8°106.9°
H5'1C5'H5'297.8°109.5°
O5'PAO1A104.4°109.4°
O5'PAO2A105.0°109.5°
O5'PAO3A103.5°109.5°
O1APAO2A114.8°109.5°
O1APAO3A113.7°109.5°
O2APAO3A113.8°109.5°
PAO2AHO2A105.0°106.8°
PAO3APB143.9°106.9°
O3APBO1B109.6°109.5°
O3APBO2B106.5°109.4°
O3APBO3B121.3°109.6°
O1BPBO2B112.1°109.5°
O1BPBO3B101.3°109.5°
PBO1BHO1B109.6°106.8°
O2BPBO3B106.1°109.4°
PBO3BC1M114.3°106.9°
O3BC1MC2M104.7°109.5°
O3BC1MH1M1114.0°109.4°
O3BC1MH1M2114.0°109.5°
C2MC1MH1M1114.0°109.4°
C2MC1MH1M2114.0°109.5°
C1MC2MO2M105.7°109.4°
C1MC2MC3M114.4°109.5°
C1MC2MH2M1108.7°109.4°
H1M1C1MH1M296.4°109.5°
O2MC2MC3M109.3°109.5°
O2MC2MH2M1113.9°109.5°
C2MO2MH2M2105.7°106.8°
C3MC2MH2M1105.0°109.5°
C2MC3MC4M106.3°109.5°
C2MC3MC5M111.4°109.5°
C2MC3MO3M111.6°109.5°
C4MC3MC5M112.5°109.4°
C4MC3MO3M105.9°109.4°
C3MC4MO4M110.4°109.5°
C3MC4MH4M1111.9°109.5°
C3MC4MH4M2111.9°109.4°
C5MC3MO3M109.0°109.5°
C3MC5MH5M1111.4°109.5°
C3MC5MH5M2111.5°109.4°
C3MC5MH5M3111.5°109.5°
C3MO3MH3M111.6°106.8°
O4MC4MH4M1111.9°109.5°
O4MC4MH4M2111.9°109.5°
C4MO4MH4M110.3°106.8°
H4M1C4MH4M298.5°109.5°
H5M1C5MH5M2111.5°109.4°
H5M1C5MH5M3111.4°109.5°
H5M2C5MH5M398.9°109.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C2N1C6C1'179.6°179.7°
N1C2N3O2179.9°179.5°
N1C2N3C40.2°0.5°
C2N1C6C50.1°0.2°
C2N1C6H6179.9°179.7°
C2N1C1'C2'115.6°55.9°
C2N1C1'O4'127.3°58.3°
C2N1C1'H1'6.3°178.8°
C6N1C2N30.1°0.5°
C6N1C2O2180.0°180.0°
N1C6C5C40.2°0.0°
N1C6C5H6180.0°180.0°
N1C6C5H5179.8°180.0°
C6N1C1'C2'64.0°124.4°
C6N1C1'O4'53.1°121.5°
C6N1C1'H1'174.1°1.4°
C1'N1C2N3179.7°179.8°
C1'N1C2O20.4°0.3°
C1'N1C6C5179.7°180.0°
C1'N1C6H60.3°0.0°
N1C1'C2'O4'121.8°118.6°
N1C1'C2'H1'117.3°122.9°
N1C1'O4'H1'117.3°122.9°
N1C1'C2'O2'76.0°86.2°
N1C1'C2'C3'158.7°155.7°
N1C1'C2'H2'40.0°37.4°
N1C1'O4'C4'156.9°158.7°
C2N3C4C50.3°0.2°
C2N3C4N4179.7°179.7°
O2C2N3C4179.9°180.0°
N3C4C5N4180.0°180.0°
N3C4C5C60.3°0.0°
N3C4C5H5179.7°180.0°
N3C4N4H41180.0°0.1°
N3C4N4H4254.7°179.9°
C4C5C6H5180.0°179.9°
C4C5C6H6179.8°180.0°
C5C4N4H410.0°180.0°
C5C4N4H42125.3°0.2°
N4C4C5C6179.7°180.0°
N4C4C5H50.2°0.1°
C4N4H41H42125.2°179.8°
H5C5C6H60.2°0.1°
C2'C1'O4'H1'121.8°118.5°
C1'C2'O2'C3'116.9°112.6°
C1'C2'O2'H2'124.6°123.6°
C1'C2'C3'H2'124.7°118.3°
C1'C2'O2'HO'2180.0°180.0°
C1'C2'C3'C4'23.3°21.0°
C1'C2'C3'O3'89.3°98.0°
C1'C2'C3'H3'149.7°139.6°
C2'C1'O4'C4'35.9°40.1°
O4'C1'C2'O2'162.2°155.2°
O4'C1'C2'C3'36.9°37.1°
O4'C1'C2'H2'81.7°81.2°
C1'O4'C4'C3'20.6°26.4°
C1'O4'C4'C5'135.2°146.0°
C1'O4'C4'H4'103.3°93.1°
H1'C1'C2'O2'41.3°36.7°
H1'C1'C2'C3'84.1°81.4°
H1'C1'C2'H2'157.3°160.3°
H1'C1'O4'C4'85.9°78.4°
O2'C2'C3'H2'115.9°123.6°
O2'C2'C3'C4'142.6°139.2°
O2'C2'C3'O3'30.1°20.1°
O2'C2'C3'H3'90.9°102.3°
C3'C2'O2'HO'263.0°67.4°
C2'C3'C4'O3'119.1°118.8°
C2'C3'C4'H3'120.8°118.5°
C2'C3'O3'H3'121.9°122.5°
C2'C3'C4'O4'2.9°1.9°
C2'C3'C4'C5'115.8°121.4°
C2'C3'C4'H4'123.1°117.7°
C2'C3'O3'H3T180.0°61.4°
H2'C2'O2'HO'255.4°56.4°
H2'C2'C3'C4'101.4°97.2°
H2'C2'C3'O3'146.0°143.8°
H2'C2'C3'H3'25.0°21.3°
C4'C3'O3'H3'126.6°122.7°
C3'C4'O4'C5'114.6°119.5°
C3'C4'O4'H4'124.0°119.5°
C3'C4'C5'H4'123.9°121.0°
C4'C3'O3'H3T68.5°176.2°
C3'C4'C5'O5'69.3°179.7°
C3'C4'C5'H5'1165.4°59.7°
C3'C4'C5'H5'256.0°60.3°
O3'C3'C4'O4'116.2°120.7°
O3'C3'C4'C5'125.1°119.8°
O3'C3'C4'H4'4.1°1.1°
H3'C3'C4'O4'123.8°116.6°
H3'C3'C4'C5'5.0°2.9°
H3'C3'C4'H4'116.0°123.8°
H3'C3'O3'H3T58.1°61.1°
O4'C4'C5'H4'120.6°121.0°
O4'C4'C5'O5'46.3°61.7°
O4'C4'C5'H5'179.0°58.3°
O4'C4'C5'H5'2171.5°178.3°
C4'C5'O5'H5'1125.3°120.0°
C4'C5'O5'H5'2125.3°120.0°
C4'C5'H5'1H5'2118.6°120.0°
C4'C5'O5'PA155.7°180.0°
H4'C4'C5'O5'166.8°59.3°
H4'C4'C5'H5'141.6°179.4°
H4'C4'C5'H5'267.9°60.7°
O5'C5'H5'1H5'2118.6°120.0°
C5'O5'PAO1A51.6°60.0°
C5'O5'PAO2A172.7°60.0°
C5'O5'PAO3A67.6°180.0°
H5'1C5'O5'PA79.1°60.0°
H5'2C5'O5'PA30.4°60.0°
O5'PAO1AO2A114.4°120.0°
O5'PAO1AO3A112.0°120.0°
O5'PAO2AO3A112.4°120.0°
O5'PAO2AHO2A180.0°60.1°
O5'PAO3APB75.3°180.0°
O1APAO2AO3A133.5°120.0°
O1APAO2AHO2A65.9°180.0°
O1APAO3APB172.1°60.0°
O2APAO3APB38.1°60.0°
O3APAO2AHO2A67.6°60.0°
PAO3APBO1B40.1°60.0°
PAO3APBO2B81.4°60.0°
PAO3APBO3B157.5°180.0°
O3APBO1BO2B118.0°120.0°
O3APBO1BO3B129.3°120.1°
O3APBO2BO3B130.5°120.1°
O3APBO1BHO1B179.9°60.0°
O3APBO3BC1M56.3°180.0°
O1BPBO2BO3B109.7°120.0°
O1BPBO3BC1M65.2°60.0°
O2BPBO1BHO1B62.0°180.0°
O2BPBO3BC1M177.7°60.0°
O3BPBO1BHO1B50.6°60.1°
PBO3BC1MC2M175.6°180.0°
PBO3BC1MH1M159.1°60.0°
PBO3BC1MH1M250.3°60.0°
O3BC1MC2MH1M1125.3°120.0°
O3BC1MC2MH1M2125.3°120.1°
O3BC1MH1M1H1M2119.9°120.0°
O3BC1MC2MO2M64.8°60.1°
O3BC1MC2MC3M174.9°180.0°
O3BC1MC2MH2M157.9°60.0°
C2MC1MH1M1H1M2119.8°119.9°
C1MC2MO2MC3M123.6°120.0°
C1MC2MO2MH2M1119.3°120.0°
C1MC2MC3MH2M1119.1°120.0°
C1MC2MO2MH2M2180.0°60.0°
C1MC2MC3MC4M175.7°NaN°
C1MC2MC3MC5M52.7°60.0°
C1MC2MC3MO3M69.3°60.1°
H1M1C1MC2MO2M60.5°180.0°
H1M1C1MC2MC3M59.8°60.0°
H1M1C1MC2MH2M1176.8°60.0°
H1M2C1MC2MO2M169.9°60.1°
H1M2C1MC2MC3M49.6°59.9°
H1M2C1MC2MH2M167.4°179.9°
O2MC2MC3MH2M1122.6°120.1°
O2MC2MC3MC4M57.3°60.1°
O2MC2MC3MC5M65.6°60.0°
O2MC2MC3MO3M172.3°180.0°
C3MC2MO2MH2M256.4°60.0°
C2MC3MC4MC5M122.2°120.1°
C2MC3MC4MO3M118.8°120.0°
C2MC3MC5MO3M123.6°120.0°
C2MC3MC4MO4M61.7°180.0°
C2MC3MC4MH4M163.6°59.9°
C2MC3MC4MH4M2173.1°60.0°
C2MC3MC5MH5M1180.0°60.0°
C2MC3MC5MH5M254.8°60.0°
C2MC3MC5MH5M354.8°180.0°
C2MC3MO3MH3M180.0°60.0°
H2M1C2MO2MH2M260.7°180.0°
H2M1C2MC3MC4M65.2°60.0°
H2M1C2MC3MC5M171.8°180.0°
H2M1C2MC3MO3M49.8°59.9°
C4MC3MC5MO3M117.2°119.9°
C3MC4MO4MH4M1125.3°120.0°
C3MC4MO4MH4M2125.3°119.9°
C3MC4MH4M1H4M2117.8°119.9°
C4MC3MC5MH5M160.8°60.1°
C4MC3MC5MH5M264.5°179.9°
C4MC3MC5MH5M3174.1°60.0°
C4MC3MO3MH3M64.8°60.0°
C3MC4MO4MH4M180.0°180.0°
C5MC3MC4MO4M176.1°59.9°
C5MC3MC4MH4M158.6°180.0°
C5MC3MC4MH4M250.8°60.0°
C3MC5MH5M1H5M2125.3°120.0°
C3MC5MH5M1H5M3125.2°120.1°
C3MC5MH5M2H5M3117.4°120.0°
C5MC3MO3MH3M56.5°179.9°
O3MC3MC4MO4M57.2°60.0°
O3MC3MC4MH4M1177.5°60.0°
O3MC3MC4MH4M268.1°180.0°
O3MC3MC5MH5M156.4°180.0°
O3MC3MC5MH5M2178.4°60.0°
O3MC3MC5MH5M368.8°59.9°
O4MC4MH4M1H4M2117.8°120.0°
H4M1C4MO4MH4M54.8°60.0°
H4M2C4MO4MH4M54.7°60.0°
H5M1C5MH5M2H5M3117.3°120.0°

222036

PDB entries from 2024-07-03

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