CDK
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
C17 | C16 | sing | 1.51Å | 1.53Å | |
C16 | N4 | sing | 1.35Å | 1.34Å | |
C16 | C15 | doub | 1.34Å | 1.40Å | |
N4 | C13 | sing | 1.46Å | 1.48Å | |
N4 | C14 | sing | 1.34Å | 1.34Å | |
C14 | O3 | doub | 1.22Å | 1.23Å | |
C14 | S1 | sing | 1.72Å | 1.70Å | |
S1 | C15 | sing | 1.77Å | 1.70Å | |
C15 | C | sing | 1.48Å | 1.39Å | |
C | N | doub | 1.33Å | 1.35Å | Aromatic |
C | C12 | sing | 1.40Å | 1.39Å | Aromatic |
N | C1 | sing | 1.32Å | 1.35Å | Aromatic |
C12 | C11 | doub | 1.38Å | 1.39Å | Aromatic |
C11 | N3 | sing | 1.32Å | 1.32Å | Aromatic |
N3 | C1 | doub | 1.32Å | 1.34Å | Aromatic |
C1 | N1 | sing | 1.38Å | 1.32Å | |
N1 | C2 | sing | 1.40Å | 1.32Å | |
C2 | C9 | sing | 1.39Å | 1.39Å | Aromatic |
C2 | C3 | doub | 1.39Å | 1.39Å | Aromatic |
C9 | C10 | doub | 1.38Å | 1.38Å | Aromatic |
C10 | C5 | sing | 1.38Å | 1.39Å | Aromatic |
C3 | C4 | sing | 1.38Å | 1.40Å | Aromatic |
C4 | C5 | doub | 1.38Å | 1.40Å | Aromatic |
C5 | S | sing | 1.76Å | 1.75Å | |
S | O1 | doub | 1.42Å | 1.50Å | |
S | O2 | doub | 1.42Å | 1.51Å | |
S | N2 | sing | 1.66Å | 1.64Å | |
N2 | C6 | sing | 1.47Å | 1.47Å | |
C6 | C7 | sing | 1.53Å | 1.54Å | |
C7 | O | sing | 1.43Å | 1.45Å | |
O | C8 | sing | 1.43Å | 1.43Å | |
C17 | H171 | sing | 1.09Å | 1.10Å | |
C17 | H172 | sing | 1.09Å | 1.10Å | |
C17 | H173 | sing | 1.09Å | 1.10Å | |
C13 | H131 | sing | 1.09Å | 1.10Å | |
C13 | H132 | sing | 1.09Å | 1.10Å | |
C13 | H133 | sing | 1.09Å | 1.10Å | |
C12 | H12 | sing | 1.08Å | 1.08Å | |
C11 | H11 | sing | 1.08Å | 1.08Å | |
N1 | H1 | sing | 0.97Å | 1.00Å | |
C9 | H9 | sing | 1.08Å | 1.08Å | |
C3 | H3 | sing | 1.08Å | 1.08Å | |
C10 | H10 | sing | 1.08Å | 1.08Å | |
C4 | H4 | sing | 1.08Å | 1.08Å | |
N2 | H2 | sing | 0.97Å | 1.00Å | |
C6 | H61C | sing | 1.09Å | 1.10Å | |
C6 | H62C | sing | 1.09Å | 1.10Å | |
C7 | H71C | sing | 1.09Å | 1.10Å | |
C7 | H72C | sing | 1.09Å | 1.10Å | |
C8 | H81C | sing | 1.09Å | 1.10Å | |
C8 | H82C | sing | 1.09Å | 1.10Å | |
C8 | H83C | sing | 1.09Å | 1.10Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
C17 | C16 | N4 | 123.0° | 121.8° |
C17 | C16 | C15 | 123.4° | 121.8° |
C16 | C17 | H171 | 109.5° | 109.5° |
C16 | C17 | H172 | 109.4° | 109.4° |
C16 | C17 | H173 | 109.5° | 109.4° |
N4 | C16 | C15 | 113.6° | 116.3° |
C16 | N4 | C13 | 122.7° | 121.2° |
C16 | N4 | C14 | 115.1° | 117.6° |
C16 | C15 | S1 | 108.2° | 105.1° |
C16 | C15 | C | 127.4° | 127.4° |
C13 | N4 | C14 | 122.2° | 121.2° |
N4 | C13 | H131 | 109.5° | 109.5° |
N4 | C13 | H132 | 109.4° | 109.5° |
N4 | C13 | H133 | 109.5° | 109.5° |
N4 | C14 | O3 | 125.5° | 127.0° |
N4 | C14 | S1 | 109.7° | 106.1° |
O3 | C14 | S1 | 124.8° | 127.0° |
C14 | S1 | C15 | 93.4° | 94.8° |
S1 | C15 | C | 124.2° | 127.5° |
C15 | C | N | 120.7° | 120.6° |
C15 | C | C12 | 119.0° | 120.5° |
N | C | C12 | 120.2° | 118.9° |
C | N | C1 | 118.5° | 120.5° |
C | C12 | C11 | 118.9° | 118.4° |
C | C12 | H12 | 120.5° | 120.8° |
N | C1 | N3 | 121.9° | 121.7° |
N | C1 | N1 | 123.4° | 119.1° |
C12 | C11 | N3 | 119.1° | 119.3° |
C11 | C12 | H12 | 120.6° | 120.8° |
C12 | C11 | H11 | 120.4° | 120.3° |
C11 | N3 | C1 | 121.3° | 121.1° |
N3 | C11 | H11 | 120.5° | 120.4° |
N3 | C1 | N1 | 114.5° | 119.2° |
C1 | N1 | C2 | 126.9° | 120.0° |
C1 | N1 | H1 | 116.5° | 120.1° |
N1 | C2 | C9 | 114.7° | 120.1° |
N1 | C2 | C3 | 124.7° | 120.0° |
C2 | N1 | H1 | 116.6° | 120.0° |
C9 | C2 | C3 | 120.5° | 119.8° |
C2 | C9 | C10 | 121.4° | 119.9° |
C2 | C9 | H9 | 119.3° | 120.0° |
C2 | C3 | C4 | 118.5° | 119.9° |
C2 | C3 | H3 | 120.8° | 120.1° |
C9 | C10 | C5 | 118.3° | 120.1° |
C10 | C9 | H9 | 119.3° | 120.1° |
C9 | C10 | H10 | 120.9° | 119.9° |
C10 | C5 | C4 | 120.8° | 120.2° |
C10 | C5 | S | 116.5° | 119.9° |
C5 | C10 | H10 | 120.8° | 120.0° |
C3 | C4 | C5 | 120.5° | 120.0° |
C4 | C3 | H3 | 120.7° | 120.0° |
C3 | C4 | H4 | 119.8° | 120.0° |
C4 | C5 | S | 122.7° | 119.9° |
C5 | C4 | H4 | 119.8° | 120.0° |
C5 | S | O1 | 108.0° | 106.4° |
C5 | S | O2 | 108.2° | 106.4° |
C5 | S | N2 | 112.2° | 107.2° |
O1 | S | O2 | 107.4° | 123.2° |
O1 | S | N2 | 110.3° | 106.4° |
O2 | S | N2 | 110.6° | 106.4° |
S | N2 | C6 | 110.1° | 120.0° |
S | N2 | H2 | 109.3° | 120.0° |
N2 | C6 | C7 | 111.4° | 109.5° |
C6 | N2 | H2 | 109.2° | 120.0° |
N2 | C6 | H61C | 108.8° | 109.5° |
N2 | C6 | H62C | 108.4° | 109.5° |
C6 | C7 | O | 113.4° | 109.5° |
C7 | C6 | H61C | 108.9° | 109.4° |
C7 | C6 | H62C | 108.4° | 109.5° |
C6 | C7 | H71C | 108.2° | 109.5° |
C6 | C7 | H72C | 107.3° | 109.4° |
C7 | O | C8 | 109.7° | 114.0° |
O | C7 | H71C | 108.2° | 109.5° |
O | C7 | H72C | 107.3° | 109.5° |
O | C8 | H81C | 109.5° | 109.5° |
O | C8 | H82C | 109.5° | 109.4° |
O | C8 | H83C | 109.4° | 109.5° |
H171 | C17 | H172 | 109.5° | 109.5° |
H171 | C17 | H173 | 109.4° | 109.5° |
H172 | C17 | H173 | 109.5° | 109.5° |
H131 | C13 | H132 | 109.5° | 109.5° |
H131 | C13 | H133 | 109.4° | 109.5° |
H132 | C13 | H133 | 109.5° | 109.4° |
H61C | C6 | H62C | 111.0° | 109.5° |
H71C | C7 | H72C | 112.5° | 109.5° |
H81C | C8 | H82C | 109.5° | 109.5° |
H81C | C8 | H83C | 109.5° | 109.5° |
H82C | C8 | H83C | 109.5° | 109.5° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
C17 | C16 | N4 | C15 | 178.5° | 179.7° |
C17 | C16 | N4 | C13 | 0.5° | 0.0° |
C17 | C16 | N4 | C14 | 180.0° | 179.9° |
C17 | C16 | C15 | S1 | 179.7° | 179.9° |
C17 | C16 | C15 | C | 4.2° | 0.0° |
C16 | C17 | H171 | H172 | 120.0° | 120.0° |
C16 | C17 | H171 | H173 | 120.0° | 120.0° |
C16 | C17 | H172 | H173 | 120.0° | 120.0° |
C16 | N4 | C13 | C14 | 179.5° | 179.9° |
C16 | N4 | C14 | O3 | 178.7° | 180.0° |
C16 | N4 | C14 | S1 | 0.5° | 0.1° |
N4 | C16 | C15 | S1 | 1.8° | 0.3° |
N4 | C16 | C15 | C | 177.3° | 179.7° |
N4 | C16 | C17 | H171 | 108.7° | 0.0° |
N4 | C16 | C17 | H172 | 11.3° | 120.0° |
N4 | C16 | C17 | H173 | 131.3° | 120.0° |
C16 | N4 | C13 | H131 | 134.9° | 90.0° |
C16 | N4 | C13 | H132 | 14.9° | 150.0° |
C16 | N4 | C13 | H133 | 105.1° | 30.1° |
C15 | C16 | N4 | C13 | 178.1° | 179.7° |
C15 | C16 | N4 | C14 | 1.5° | 0.2° |
C16 | C15 | S1 | C14 | 1.3° | 0.3° |
C16 | C15 | S1 | C | 175.7° | 179.9° |
C16 | C15 | C | N | 151.0° | 0.1° |
C16 | C15 | C | C12 | 31.9° | 179.7° |
C15 | C16 | C17 | H171 | 69.7° | 179.8° |
C15 | C16 | C17 | H172 | 170.3° | 60.3° |
C15 | C16 | C17 | H173 | 50.3° | 59.7° |
C13 | N4 | C14 | O3 | 0.8° | 0.1° |
C13 | N4 | C14 | S1 | 179.1° | 180.0° |
N4 | C13 | H131 | H132 | 120.0° | 120.0° |
N4 | C13 | H131 | H133 | 120.0° | 120.0° |
N4 | C13 | H132 | H133 | 120.0° | 120.0° |
N4 | C14 | O3 | S1 | 178.0° | 179.9° |
N4 | C14 | S1 | C15 | 0.5° | 0.2° |
C14 | N4 | C13 | H131 | 45.6° | 90.0° |
C14 | N4 | C13 | H132 | 165.6° | 30.1° |
C14 | N4 | C13 | H133 | 74.4° | 150.0° |
O3 | C14 | S1 | C15 | 177.8° | 179.9° |
C14 | S1 | C15 | C | 177.0° | 179.7° |
S1 | C15 | C | N | 34.1° | 179.9° |
S1 | C15 | C | C12 | 143.0° | 0.2° |
C15 | C | N | C12 | 177.1° | 179.7° |
C15 | C | N | C1 | 176.1° | 180.0° |
C15 | C | C12 | C11 | 177.9° | 179.9° |
C15 | C | C12 | H12 | 2.1° | 0.0° |
N | C | C12 | C11 | 0.8° | 0.3° |
C | N | C1 | N3 | 2.4° | 0.0° |
C | N | C1 | N1 | 178.6° | 180.0° |
N | C | C12 | H12 | 179.2° | 179.7° |
C12 | C | N | C1 | 1.0° | 0.3° |
C | C12 | C11 | H12 | 180.0° | 180.0° |
C | C12 | C11 | N3 | 1.2° | 0.0° |
C | C12 | C11 | H11 | 178.8° | 180.0° |
N | C1 | N3 | C11 | 2.0° | 0.3° |
N | C1 | N3 | N1 | 176.5° | 180.0° |
N | C1 | N1 | C2 | 19.2° | 174.5° |
N | C1 | N1 | H1 | 160.8° | 5.6° |
C12 | C11 | N3 | H11 | 180.0° | 180.0° |
C12 | C11 | N3 | C1 | 0.2° | 0.3° |
C11 | N3 | C1 | N1 | 178.5° | 179.7° |
N3 | C11 | C12 | H12 | 178.8° | 180.0° |
N3 | C1 | N1 | C2 | 164.4° | 5.5° |
C1 | N3 | C11 | H11 | 179.8° | 179.7° |
N3 | C1 | N1 | H1 | 15.6° | 174.4° |
C1 | N1 | C2 | H1 | 180.0° | 179.9° |
C1 | N1 | C2 | C9 | 173.7° | 146.5° |
C1 | N1 | C2 | C3 | 9.3° | 33.9° |
N1 | C2 | C9 | C3 | 177.1° | 179.7° |
N1 | C2 | C9 | C10 | 178.3° | 180.0° |
N1 | C2 | C3 | C4 | 177.3° | 180.0° |
N1 | C2 | C9 | H9 | 1.7° | 0.0° |
N1 | C2 | C3 | H3 | 2.7° | 0.0° |
C2 | C9 | C10 | H9 | 180.0° | 180.0° |
C2 | C9 | C10 | C5 | 0.9° | 0.0° |
C9 | C2 | C3 | C4 | 0.4° | 0.3° |
C9 | C2 | N1 | H1 | 6.3° | 33.4° |
C9 | C2 | C3 | H3 | 179.5° | 179.7° |
C2 | C9 | C10 | H10 | 179.1° | 180.0° |
C3 | C2 | C9 | C10 | 1.2° | 0.3° |
C2 | C3 | C4 | H3 | 180.0° | 180.0° |
C2 | C3 | C4 | C5 | 0.5° | 0.1° |
C3 | C2 | N1 | H1 | 170.7° | 146.2° |
C3 | C2 | C9 | H9 | 178.9° | 179.7° |
C2 | C3 | C4 | H4 | 179.5° | 180.0° |
C9 | C10 | C5 | H10 | 180.0° | 180.0° |
C9 | C10 | C5 | C4 | 0.1° | 0.2° |
C9 | C10 | C5 | S | 178.2° | 180.0° |
C10 | C5 | C4 | C3 | 0.8° | 0.2° |
C10 | C5 | C4 | S | 178.0° | 179.8° |
C10 | C5 | S | O1 | 98.8° | 156.5° |
C10 | C5 | S | O2 | 17.1° | 23.5° |
C10 | C5 | S | N2 | 139.4° | 90.0° |
C5 | C10 | C9 | H9 | 179.1° | 180.0° |
C10 | C5 | C4 | H4 | 179.3° | 179.7° |
C3 | C4 | C5 | H4 | 180.0° | 179.9° |
C3 | C4 | C5 | S | 178.8° | 180.0° |
C4 | C5 | S | O1 | 79.3° | 23.7° |
C4 | C5 | S | O2 | 164.7° | 156.7° |
C4 | C5 | S | N2 | 42.5° | 89.8° |
C5 | C4 | C3 | H3 | 179.5° | 179.9° |
C4 | C5 | C10 | H10 | 179.9° | 179.8° |
C5 | S | O1 | O2 | 116.5° | 123.0° |
C5 | S | O1 | N2 | 122.9° | 114.1° |
C5 | S | O2 | N2 | 123.2° | 114.1° |
C5 | S | N2 | C6 | 176.2° | 65.0° |
S | C5 | C10 | H10 | 1.8° | 0.0° |
S | C5 | C4 | H4 | 1.2° | 0.1° |
C5 | S | N2 | H2 | 63.8° | 115.0° |
O1 | S | O2 | N2 | 120.4° | 122.9° |
O1 | S | N2 | C6 | 63.4° | 48.5° |
O1 | S | N2 | H2 | 56.6° | 131.4° |
O2 | S | N2 | C6 | 55.3° | 178.6° |
O2 | S | N2 | H2 | 175.3° | 1.5° |
S | N2 | C6 | H2 | 120.0° | 179.9° |
S | N2 | C6 | C7 | 91.1° | 165.0° |
S | N2 | C6 | H61C | 28.9° | 75.0° |
S | N2 | C6 | H62C | 149.7° | 45.0° |
N2 | C6 | C7 | H61C | 120.0° | 120.0° |
N2 | C6 | C7 | H62C | 119.2° | 120.1° |
N2 | C6 | C7 | O | 104.5° | 64.9° |
N2 | C6 | H61C | H62C | 119.2° | 120.0° |
N2 | C6 | C7 | H71C | 135.5° | 175.0° |
N2 | C6 | C7 | H72C | 13.8° | 55.1° |
C6 | C7 | O | H71C | 120.0° | 120.0° |
C6 | C7 | O | H72C | 118.3° | 119.9° |
C6 | C7 | O | C8 | 138.1° | 180.0° |
C7 | C6 | N2 | H2 | 148.9° | 14.9° |
C7 | C6 | H61C | H62C | 119.2° | 120.0° |
C6 | C7 | H71C | H72C | 118.4° | 119.9° |
O | C7 | C6 | H61C | 15.5° | 55.0° |
O | C7 | C6 | H62C | 136.3° | 175.0° |
O | C7 | H71C | H72C | 118.4° | 120.0° |
C7 | O | C8 | H81C | 50.5° | 59.9° |
C7 | O | C8 | H82C | 69.5° | 60.0° |
C7 | O | C8 | H83C | 170.5° | 180.0° |
C8 | O | C7 | H71C | 18.1° | 59.9° |
C8 | O | C7 | H72C | 103.6° | 60.1° |
O | C8 | H81C | H82C | 120.0° | 119.9° |
O | C8 | H81C | H83C | 120.0° | 120.0° |
O | C8 | H82C | H83C | 120.0° | 120.0° |
H171 | C17 | H172 | H173 | 120.0° | 120.1° |
H131 | C13 | H132 | H133 | 120.0° | 120.0° |
H12 | C12 | C11 | H11 | 1.2° | 0.0° |
H9 | C9 | C10 | H10 | 0.9° | 0.0° |
H3 | C3 | C4 | H4 | 0.4° | 0.0° |
H2 | N2 | C6 | H61C | 91.1° | 105.0° |
H2 | N2 | C6 | H62C | 29.7° | 135.0° |
H61C | C6 | C7 | H71C | 104.5° | 65.0° |
H61C | C6 | C7 | H72C | 133.8° | 175.0° |
H62C | C6 | C7 | H71C | 16.3° | 55.0° |
H62C | C6 | C7 | H72C | 105.4° | 65.0° |
H81C | C8 | H82C | H83C | 120.0° | 120.1° |