Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

CDK

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C17C16sing1.51Å1.53Å
C16N4sing1.35Å1.34Å
C16C15doub1.34Å1.40Å
N4C13sing1.46Å1.48Å
N4C14sing1.34Å1.34Å
C14O3doub1.22Å1.23Å
C14S1sing1.72Å1.70Å
S1C15sing1.77Å1.70Å
C15Csing1.48Å1.39Å
CNdoub1.33Å1.35ÅAromatic
CC12sing1.40Å1.39ÅAromatic
NC1sing1.32Å1.35ÅAromatic
C12C11doub1.38Å1.39ÅAromatic
C11N3sing1.32Å1.32ÅAromatic
N3C1doub1.32Å1.34ÅAromatic
C1N1sing1.38Å1.32Å
N1C2sing1.40Å1.32Å
C2C9sing1.39Å1.39ÅAromatic
C2C3doub1.39Å1.39ÅAromatic
C9C10doub1.38Å1.38ÅAromatic
C10C5sing1.38Å1.39ÅAromatic
C3C4sing1.38Å1.40ÅAromatic
C4C5doub1.38Å1.40ÅAromatic
C5Ssing1.76Å1.75Å
SO1doub1.42Å1.50Å
SO2doub1.42Å1.51Å
SN2sing1.66Å1.64Å
N2C6sing1.47Å1.47Å
C6C7sing1.53Å1.54Å
C7Osing1.43Å1.45Å
OC8sing1.43Å1.43Å
C17H171sing1.09Å1.10Å
C17H172sing1.09Å1.10Å
C17H173sing1.09Å1.10Å
C13H131sing1.09Å1.10Å
C13H132sing1.09Å1.10Å
C13H133sing1.09Å1.10Å
C12H12sing1.08Å1.08Å
C11H11sing1.08Å1.08Å
N1H1sing0.97Å1.00Å
C9H9sing1.08Å1.08Å
C3H3sing1.08Å1.08Å
C10H10sing1.08Å1.08Å
C4H4sing1.08Å1.08Å
N2H2sing0.97Å1.00Å
C6H61Csing1.09Å1.10Å
C6H62Csing1.09Å1.10Å
C7H71Csing1.09Å1.10Å
C7H72Csing1.09Å1.10Å
C8H81Csing1.09Å1.10Å
C8H82Csing1.09Å1.10Å
C8H83Csing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C17C16N4123.0°121.8°
C17C16C15123.4°121.8°
C16C17H171109.5°109.5°
C16C17H172109.4°109.4°
C16C17H173109.5°109.4°
N4C16C15113.6°116.3°
C16N4C13122.7°121.2°
C16N4C14115.1°117.6°
C16C15S1108.2°105.1°
C16C15C127.4°127.4°
C13N4C14122.2°121.2°
N4C13H131109.5°109.5°
N4C13H132109.4°109.5°
N4C13H133109.5°109.5°
N4C14O3125.5°127.0°
N4C14S1109.7°106.1°
O3C14S1124.8°127.0°
C14S1C1593.4°94.8°
S1C15C124.2°127.5°
C15CN120.7°120.6°
C15CC12119.0°120.5°
NCC12120.2°118.9°
CNC1118.5°120.5°
CC12C11118.9°118.4°
CC12H12120.5°120.8°
NC1N3121.9°121.7°
NC1N1123.4°119.1°
C12C11N3119.1°119.3°
C11C12H12120.6°120.8°
C12C11H11120.4°120.3°
C11N3C1121.3°121.1°
N3C11H11120.5°120.4°
N3C1N1114.5°119.2°
C1N1C2126.9°120.0°
C1N1H1116.5°120.1°
N1C2C9114.7°120.1°
N1C2C3124.7°120.0°
C2N1H1116.6°120.0°
C9C2C3120.5°119.8°
C2C9C10121.4°119.9°
C2C9H9119.3°120.0°
C2C3C4118.5°119.9°
C2C3H3120.8°120.1°
C9C10C5118.3°120.1°
C10C9H9119.3°120.1°
C9C10H10120.9°119.9°
C10C5C4120.8°120.2°
C10C5S116.5°119.9°
C5C10H10120.8°120.0°
C3C4C5120.5°120.0°
C4C3H3120.7°120.0°
C3C4H4119.8°120.0°
C4C5S122.7°119.9°
C5C4H4119.8°120.0°
C5SO1108.0°106.4°
C5SO2108.2°106.4°
C5SN2112.2°107.2°
O1SO2107.4°123.2°
O1SN2110.3°106.4°
O2SN2110.6°106.4°
SN2C6110.1°120.0°
SN2H2109.3°120.0°
N2C6C7111.4°109.5°
C6N2H2109.2°120.0°
N2C6H61C108.8°109.5°
N2C6H62C108.4°109.5°
C6C7O113.4°109.5°
C7C6H61C108.9°109.4°
C7C6H62C108.4°109.5°
C6C7H71C108.2°109.5°
C6C7H72C107.3°109.4°
C7OC8109.7°114.0°
OC7H71C108.2°109.5°
OC7H72C107.3°109.5°
OC8H81C109.5°109.5°
OC8H82C109.5°109.4°
OC8H83C109.4°109.5°
H171C17H172109.5°109.5°
H171C17H173109.4°109.5°
H172C17H173109.5°109.5°
H131C13H132109.5°109.5°
H131C13H133109.4°109.5°
H132C13H133109.5°109.4°
H61CC6H62C111.0°109.5°
H71CC7H72C112.5°109.5°
H81CC8H82C109.5°109.5°
H81CC8H83C109.5°109.5°
H82CC8H83C109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C17C16N4C15178.5°179.7°
C17C16N4C130.5°0.0°
C17C16N4C14180.0°179.9°
C17C16C15S1179.7°179.9°
C17C16C15C4.2°0.0°
C16C17H171H172120.0°120.0°
C16C17H171H173120.0°120.0°
C16C17H172H173120.0°120.0°
C16N4C13C14179.5°179.9°
C16N4C14O3178.7°180.0°
C16N4C14S10.5°0.1°
N4C16C15S11.8°0.3°
N4C16C15C177.3°179.7°
N4C16C17H171108.7°0.0°
N4C16C17H17211.3°120.0°
N4C16C17H173131.3°120.0°
C16N4C13H131134.9°90.0°
C16N4C13H13214.9°150.0°
C16N4C13H133105.1°30.1°
C15C16N4C13178.1°179.7°
C15C16N4C141.5°0.2°
C16C15S1C141.3°0.3°
C16C15S1C175.7°179.9°
C16C15CN151.0°0.1°
C16C15CC1231.9°179.7°
C15C16C17H17169.7°179.8°
C15C16C17H172170.3°60.3°
C15C16C17H17350.3°59.7°
C13N4C14O30.8°0.1°
C13N4C14S1179.1°180.0°
N4C13H131H132120.0°120.0°
N4C13H131H133120.0°120.0°
N4C13H132H133120.0°120.0°
N4C14O3S1178.0°179.9°
N4C14S1C150.5°0.2°
C14N4C13H13145.6°90.0°
C14N4C13H132165.6°30.1°
C14N4C13H13374.4°150.0°
O3C14S1C15177.8°179.9°
C14S1C15C177.0°179.7°
S1C15CN34.1°179.9°
S1C15CC12143.0°0.2°
C15CNC12177.1°179.7°
C15CNC1176.1°180.0°
C15CC12C11177.9°179.9°
C15CC12H122.1°0.0°
NCC12C110.8°0.3°
CNC1N32.4°0.0°
CNC1N1178.6°180.0°
NCC12H12179.2°179.7°
C12CNC11.0°0.3°
CC12C11H12180.0°180.0°
CC12C11N31.2°0.0°
CC12C11H11178.8°180.0°
NC1N3C112.0°0.3°
NC1N3N1176.5°180.0°
NC1N1C219.2°174.5°
NC1N1H1160.8°5.6°
C12C11N3H11180.0°180.0°
C12C11N3C10.2°0.3°
C11N3C1N1178.5°179.7°
N3C11C12H12178.8°180.0°
N3C1N1C2164.4°5.5°
C1N3C11H11179.8°179.7°
N3C1N1H115.6°174.4°
C1N1C2H1180.0°179.9°
C1N1C2C9173.7°146.5°
C1N1C2C39.3°33.9°
N1C2C9C3177.1°179.7°
N1C2C9C10178.3°180.0°
N1C2C3C4177.3°180.0°
N1C2C9H91.7°0.0°
N1C2C3H32.7°0.0°
C2C9C10H9180.0°180.0°
C2C9C10C50.9°0.0°
C9C2C3C40.4°0.3°
C9C2N1H16.3°33.4°
C9C2C3H3179.5°179.7°
C2C9C10H10179.1°180.0°
C3C2C9C101.2°0.3°
C2C3C4H3180.0°180.0°
C2C3C4C50.5°0.1°
C3C2N1H1170.7°146.2°
C3C2C9H9178.9°179.7°
C2C3C4H4179.5°180.0°
C9C10C5H10180.0°180.0°
C9C10C5C40.1°0.2°
C9C10C5S178.2°180.0°
C10C5C4C30.8°0.2°
C10C5C4S178.0°179.8°
C10C5SO198.8°156.5°
C10C5SO217.1°23.5°
C10C5SN2139.4°90.0°
C5C10C9H9179.1°180.0°
C10C5C4H4179.3°179.7°
C3C4C5H4180.0°179.9°
C3C4C5S178.8°180.0°
C4C5SO179.3°23.7°
C4C5SO2164.7°156.7°
C4C5SN242.5°89.8°
C5C4C3H3179.5°179.9°
C4C5C10H10179.9°179.8°
C5SO1O2116.5°123.0°
C5SO1N2122.9°114.1°
C5SO2N2123.2°114.1°
C5SN2C6176.2°65.0°
SC5C10H101.8°0.0°
SC5C4H41.2°0.1°
C5SN2H263.8°115.0°
O1SO2N2120.4°122.9°
O1SN2C663.4°48.5°
O1SN2H256.6°131.4°
O2SN2C655.3°178.6°
O2SN2H2175.3°1.5°
SN2C6H2120.0°179.9°
SN2C6C791.1°165.0°
SN2C6H61C28.9°75.0°
SN2C6H62C149.7°45.0°
N2C6C7H61C120.0°120.0°
N2C6C7H62C119.2°120.1°
N2C6C7O104.5°64.9°
N2C6H61CH62C119.2°120.0°
N2C6C7H71C135.5°175.0°
N2C6C7H72C13.8°55.1°
C6C7OH71C120.0°120.0°
C6C7OH72C118.3°119.9°
C6C7OC8138.1°180.0°
C7C6N2H2148.9°14.9°
C7C6H61CH62C119.2°120.0°
C6C7H71CH72C118.4°119.9°
OC7C6H61C15.5°55.0°
OC7C6H62C136.3°175.0°
OC7H71CH72C118.4°120.0°
C7OC8H81C50.5°59.9°
C7OC8H82C69.5°60.0°
C7OC8H83C170.5°180.0°
C8OC7H71C18.1°59.9°
C8OC7H72C103.6°60.1°
OC8H81CH82C120.0°119.9°
OC8H81CH83C120.0°120.0°
OC8H82CH83C120.0°120.0°
H171C17H172H173120.0°120.1°
H131C13H132H133120.0°120.0°
H12C12C11H111.2°0.0°
H9C9C10H100.9°0.0°
H3C3C4H40.4°0.0°
H2N2C6H61C91.1°105.0°
H2N2C6H62C29.7°135.0°
H61CC6C7H71C104.5°65.0°
H61CC6C7H72C133.8°175.0°
H62CC6C7H71C16.3°55.0°
H62CC6C7H72C105.4°65.0°
H81CC8H82CH83C120.0°120.1°

226262

PDB entries from 2024-10-16

PDB statisticsPDBj update infoContact PDBjnumon