Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

CDC

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
N1C2sing1.35Å1.40Å
N1C6sing1.36Å1.38Å
N1C1'sing1.46Å1.49Å
C2N3sing1.33Å1.34Å
C2O2doub1.22Å1.26Å
N3C4doub1.33Å1.38Å
C4C5sing1.41Å1.42Å
C4N4sing1.38Å1.35Å
C5C6doub1.35Å1.40Å
C5H5sing1.08Å1.08Å
C6H6sing1.08Å1.08Å
N4H41sing0.97Å1.00Å
N4H42sing0.97Å1.00Å
C1'C2'sing1.55Å1.50Å
C1'O4'sing1.44Å1.40Å
C1'H1'sing1.09Å1.10Å
C2'O2'sing1.43Å1.41Å
C2'C3'sing1.55Å1.52Å
C2'H2'sing1.09Å1.10Å
O2'HO'2sing0.97Å0.95Å
C3'C4'sing1.54Å1.54Å
C3'O3'sing1.43Å1.43Å
C3'H3'sing1.09Å1.10Å
C4'O4'sing1.44Å1.43Å
C4'C5'sing1.53Å1.50Å
C4'H4'sing1.09Å1.10Å
O3'H3Tsing0.97Å0.95Å
C5'O5'sing1.43Å1.42Å
C5'H5'1sing1.09Å1.10Å
C5'H5'2sing1.09Å1.10Å
O5'PAsing1.61Å1.67Å
PAO1Adoub1.48Å1.54Å
PAO2Asing1.61Å1.56Å
PAO3Asing1.61Å1.62Å
O2AHO2Asing0.97Å0.95Å
O3APBsing1.61Å1.64Å
PBO1Bsing1.61Å1.66Å
PBO2Bsing1.54Å1.55Å
PBO3Bdoub1.54Å1.55Å
O1BC14sing1.43Å1.40Å
C14C15sing1.53Å1.56Å
C14H141sing1.09Å1.10Å
C14H142sing1.09Å1.10Å
C15N11sing1.47Å1.52Å
C15H151sing1.09Å1.10Å
C15H152sing1.09Å1.10Å
N11C16sing1.47Å1.47Å
N11C17sing1.47Å1.47Å
N11C18sing1.47Å1.48Å
C16H161sing1.09Å1.10Å
C16H162sing1.09Å1.10Å
C16H163sing1.09Å1.10Å
C17H171sing1.09Å1.10Å
C17H172sing1.09Å1.10Å
C17H173sing1.09Å1.10Å
C18H181sing1.09Å1.10Å
C18H182sing1.09Å1.10Å
C18H183sing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C2N1C6116.7°120.3°
C2N1C1'120.5°119.8°
N1C2N3122.5°121.1°
N1C2O2123.0°119.5°
C6N1C1'122.8°119.9°
N1C6C5123.3°119.3°
N1C6H6118.3°120.3°
N1C1'C2'115.8°110.8°
N1C1'O4'110.6°110.6°
N1C1'H1'102.4°110.5°
N3C2O2114.5°119.5°
C2N3C4120.6°120.7°
N3C4C5120.8°119.6°
N3C4N4117.0°120.1°
C5C4N4122.2°120.2°
C4C5C6116.2°119.0°
C4C5H5121.9°120.5°
C4N4H41125.5°119.9°
C4N4H42109.1°120.0°
C6C5H5121.9°120.5°
C5C6H6118.4°120.4°
H41N4H42125.5°120.1°
C2'C1'O4'103.1°103.5°
C2'C1'H1'110.0°110.6°
C1'C2'O2'109.5°110.9°
C1'C2'C3'102.0°102.1°
C1'C2'H2'116.7°110.9°
O4'C1'H1'115.3°110.6°
C1'O4'C4'109.0°106.9°
O2'C2'C3'115.8°110.9°
O2'C2'H2'103.1°110.8°
C2'O2'HO'2109.5°106.8°
C3'C2'H2'110.4°111.0°
C2'C3'C4'104.8°104.1°
C2'C3'O3'115.4°110.5°
C2'C3'H3'107.5°110.5°
C4'C3'O3'105.2°110.8°
C4'C3'H3'117.3°110.5°
C3'C4'O4'103.7°107.4°
C3'C4'C5'101.7°109.9°
C3'C4'H4'119.7°109.9°
O3'C3'H3'107.1°110.4°
C3'O3'H3T109.5°106.8°
O4'C4'C5'115.0°109.9°
O4'C4'H4'107.6°109.9°
C5'C4'H4'109.4°109.9°
C4'C5'O5'112.7°109.5°
C4'C5'H5'1107.6°109.5°
C4'C5'H5'2108.4°109.4°
O5'C5'H5'1107.7°109.5°
O5'C5'H5'2108.4°109.5°
C5'O5'PA119.0°106.8°
H5'1C5'H5'2112.0°109.5°
O5'PAO1A109.3°109.5°
O5'PAO2A102.8°109.5°
O5'PAO3A111.9°109.5°
O1APAO2A112.9°109.5°
O1APAO3A107.9°109.5°
O2APAO3A112.0°109.5°
PAO2AHO2A109.5°106.9°
PAO3APB120.0°106.8°
O3APBO1B112.1°109.5°
O3APBO2B111.2°109.4°
O3APBO3B102.9°109.5°
O1BPBO2B114.1°109.5°
O1BPBO3B103.7°109.5°
PBO1BC14110.5°106.8°
O2BPBO3B112.0°109.5°
O1BC14C15110.5°109.5°
O1BC14H141108.9°109.5°
O1BC14H142109.2°109.4°
C15C14H141108.9°109.5°
C15C14H142109.1°109.4°
C14C15N11113.8°109.5°
C14C15H151107.1°109.5°
C14C15H152108.1°109.5°
H141C14H142110.3°109.5°
N11C15H151107.1°109.5°
N11C15H152108.1°109.4°
C15N11C16111.2°109.4°
C15N11C17107.0°109.4°
C15N11C18112.7°109.5°
H151C15H152112.9°109.4°
C16N11C17111.0°109.5°
C16N11C18106.4°109.5°
N11C16H161109.5°109.5°
N11C16H162109.5°109.5°
N11C16H163109.5°109.4°
C17N11C18108.5°109.5°
N11C17H171109.5°109.4°
N11C17H172109.5°109.5°
N11C17H173109.5°109.5°
N11C18H181109.5°109.5°
N11C18H182109.5°109.5°
N11C18H183109.5°109.5°
H161C16H162109.5°109.4°
H161C16H163109.5°109.5°
H162C16H163109.5°109.4°
H171C17H172109.5°109.5°
H171C17H173109.4°109.5°
H172C17H173109.5°109.5°
H181C18H182109.5°109.5°
H181C18H183109.5°109.4°
H182C18H183109.4°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C2N1C6C1'178.4°179.8°
N1C2N3O2179.9°179.3°
N1C2N3C40.4°0.6°
C2N1C6C50.0°0.2°
C2N1C6H6180.0°179.7°
C2N1C1'C2'114.1°60.9°
C2N1C1'O4'129.1°53.3°
C2N1C1'H1'5.7°176.1°
C6N1C2N30.0°0.6°
C6N1C2O2179.8°179.9°
N1C6C5C40.2°0.0°
N1C6C5H6180.0°179.9°
N1C6C5H5179.8°180.0°
C6N1C1'C2'67.5°119.3°
C6N1C1'O4'49.3°126.5°
C6N1C1'H1'172.7°3.6°
C1'N1C2N3178.5°179.7°
C1'N1C2O21.3°0.3°
C1'N1C6C5178.4°180.0°
C1'N1C6H61.6°0.1°
N1C1'C2'O4'120.9°118.6°
N1C1'C2'H1'115.5°122.9°
N1C1'O4'H1'115.6°122.8°
N1C1'C2'O2'76.6°86.2°
N1C1'C2'C3'160.2°155.7°
N1C1'C2'H2'39.8°37.4°
N1C1'O4'C4'166.4°158.7°
C2N3C4C50.6°0.3°
C2N3C4N4179.2°179.7°
O2C2N3C4179.5°179.9°
N3C4C5N4179.8°180.0°
N3C4C5C60.5°0.0°
N3C4C5H5179.5°180.0°
N3C4N4H41179.9°179.9°
N3C4N4H420.1°0.0°
C4C5C6H5180.0°180.0°
C4C5C6H6179.8°179.9°
C5C4N4H410.1°0.0°
C5C4N4H42179.9°180.0°
N4C4C5C6179.3°179.9°
N4C4C5H50.7°0.0°
C4N4H41H42180.0°180.0°
H5C5C6H60.2°0.1°
C2'C1'O4'H1'120.0°118.5°
C1'C2'O2'C3'114.5°112.7°
C1'C2'O2'H2'124.8°123.6°
C1'C2'C3'H2'124.7°118.2°
C1'C2'O2'HO'218.7°180.0°
C1'C2'C3'C4'23.5°21.0°
C1'C2'C3'O3'91.7°98.0°
C1'C2'C3'H3'148.9°139.6°
C2'C1'O4'C4'41.9°40.0°
O4'C1'C2'O2'162.4°155.3°
O4'C1'C2'C3'39.3°37.1°
O4'C1'C2'H2'81.1°81.2°
C1'O4'C4'C3'25.9°26.4°
C1'O4'C4'C5'136.1°145.9°
C1'O4'C4'H4'101.9°93.1°
H1'C1'C2'O2'38.9°36.8°
H1'C1'C2'C3'84.2°81.4°
H1'C1'C2'H2'155.4°160.3°
H1'C1'O4'C4'78.0°78.5°
O2'C2'C3'H2'116.6°123.6°
O2'C2'C3'C4'142.2°139.2°
O2'C2'C3'O3'27.0°20.2°
O2'C2'C3'H3'92.3°102.3°
C3'C2'O2'HO'2133.2°67.3°
C2'C3'C4'O3'122.1°118.7°
C2'C3'C4'H3'119.1°118.6°
C2'C3'O3'H3'119.6°122.5°
C2'C3'C4'O4'0.1°1.9°
C2'C3'C4'C5'119.5°121.4°
C2'C3'C4'H4'120.0°117.6°
C2'C3'O3'H3T43.3°61.3°
H2'C2'O2'HO'2106.1°56.4°
H2'C2'C3'C4'101.2°97.2°
H2'C2'C3'O3'143.6°143.8°
H2'C2'C3'H3'24.3°21.4°
C4'C3'O3'H3'125.4°122.7°
C3'C4'O4'C5'110.1°119.5°
C3'C4'O4'H4'127.8°119.5°
C3'C4'C5'H4'127.6°121.0°
C4'C3'O3'H3T71.7°176.1°
C3'C4'C5'O5'107.2°175.3°
C3'C4'C5'H5'111.5°64.7°
C3'C4'C5'H5'2132.8°55.3°
O3'C3'C4'O4'121.9°120.7°
O3'C3'C4'C5'118.5°119.8°
O3'C3'C4'H4'2.1°1.2°
H3'C3'C4'O4'119.2°116.7°
H3'C3'C4'C5'0.4°2.8°
H3'C3'C4'H4'120.9°123.8°
H3'C3'O3'H3T162.9°61.2°
O4'C4'C5'H4'121.1°121.0°
O4'C4'C5'O5'4.2°66.7°
O4'C4'C5'H5'1122.8°53.3°
O4'C4'C5'H5'2115.9°173.3°
C4'C5'O5'H5'1118.6°120.0°
C4'C5'O5'H5'2120.0°120.0°
C4'C5'H5'1H5'2119.1°119.9°
C4'C5'O5'PA116.7°180.0°
H4'C4'C5'O5'125.3°54.3°
H4'C4'C5'H5'1116.1°174.3°
H4'C4'C5'H5'25.3°65.7°
O5'C5'H5'1H5'2119.1°120.0°
C5'O5'PAO1A102.9°55.0°
C5'O5'PAO2A17.3°65.0°
C5'O5'PAO3A137.6°175.0°
H5'1C5'O5'PA1.9°60.0°
H5'2C5'O5'PA123.3°60.0°
O5'PAO1AO2A113.8°120.0°
O5'PAO1AO3A121.9°120.0°
O5'PAO2AO3A120.3°120.0°
O5'PAO2AHO2A64.3°60.0°
O5'PAO3APB57.5°160.0°
O1APAO2AO3A122.0°120.0°
O1APAO2AHO2A53.4°180.0°
O1APAO3APB177.8°40.0°
O2APAO3APB57.3°80.0°
O3APAO2AHO2A175.4°60.0°
PAO3APBO1B71.6°160.0°
PAO3APBO2B57.6°40.0°
PAO3APBO3B177.6°80.0°
O3APBO1BO2B127.6°120.0°
O3APBO1BO3B110.3°120.0°
O3APBO2BO3B114.5°120.0°
O3APBO1BC14171.3°175.0°
O1BPBO2BO3B117.5°120.0°
PBO1BC14C15177.0°180.0°
PBO1BC14H14157.4°60.0°
PBO1BC14H14263.0°60.0°
O2BPBO1BC1461.1°55.0°
O3BPBO1BC1461.0°65.0°
O1BC14C15H141119.6°120.0°
O1BC14C15H142120.0°120.0°
O1BC14H141H142119.8°120.0°
O1BC14C15N11122.6°67.6°
O1BC14C15H151119.3°52.4°
O1BC14C15H1522.5°172.4°
C15C14H141H142119.7°120.0°
C14C15N11H151118.1°120.0°
C14C15N11H152120.0°120.0°
C14C15H151H152118.8°120.0°
C14C15N11C16139.8°55.2°
C14C15N11C1798.7°64.7°
C14C15N11C1820.4°175.3°
H141C14C15N113.0°172.4°
H141C14C15H151121.1°67.6°
H141C14C15H152117.1°52.4°
H142C14C15N11117.4°52.3°
H142C14C15H1510.7°172.3°
H142C14C15H152122.5°67.7°
N11C15H151H152118.8°119.9°
C15N11C16C17119.1°119.9°
C15N11C16C18123.1°120.0°
C15N11C17C18121.8°120.0°
C15N11C16H16161.4°60.0°
C15N11C16H16258.6°60.1°
C15N11C16H163178.6°180.0°
C15N11C17H171159.5°170.0°
C15N11C17H17239.6°50.0°
C15N11C17H17380.5°70.0°
C15N11C18H181127.4°60.0°
C15N11C18H1827.4°60.0°
C15N11C18H183112.5°180.0°
H151C15N11C16102.1°175.2°
H151C15N11C1719.4°55.3°
H151C15N11C18138.5°64.7°
H152C15N11C1619.8°64.8°
H152C15N11C17141.2°175.2°
H152C15N11C1899.6°55.2°
C16N11C17C18116.6°120.1°
N11C16H161H162120.0°120.0°
N11C16H161H163120.0°120.0°
N11C16H162H163120.0°120.0°
C16N11C17H17178.9°70.0°
C16N11C17H172161.1°170.0°
C16N11C17H17341.1°49.9°
C16N11C18H1815.3°60.0°
C16N11C18H182114.7°180.0°
C16N11C18H183125.3°60.0°
C17N11C16H16157.7°60.0°
C17N11C16H162177.7°180.0°
C17N11C16H16362.3°60.1°
N11C17H171H172120.0°120.0°
N11C17H171H173120.0°119.9°
N11C17H172H173120.1°120.0°
C17N11C18H181114.3°180.0°
C17N11C18H182125.8°59.9°
C17N11C18H1835.8°60.0°
C18N11C16H161175.5°180.0°
C18N11C16H16264.4°60.0°
C18N11C16H16355.6°60.0°
C18N11C17H17137.7°50.0°
C18N11C17H17282.3°70.0°
C18N11C17H173157.7°170.0°
N11C18H181H182120.0°120.0°
N11C18H181H183120.1°120.0°
N11C18H182H183120.0°120.0°
H161C16H162H163120.0°120.0°
H171C17H172H173120.0°120.0°
H181C18H182H183120.0°120.0°

218196

PDB entries from 2024-04-10

PDB statisticsPDBj update infoContact PDBjnumon