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Summary Geometry Related PDB entries

Obsolete: CD3

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
CD	O1	sing	0.00Å	2.37Å
CD	O2	sing	0.00Å	2.46Å
CD	O3	sing	0.00Å	2.36Å
O1	HO11	sing	0.00Å	0.95Å
O1	HO12	sing	0.00Å	0.95Å
O2	HO21	sing	0.00Å	0.95Å
O2	HO22	sing	0.00Å	0.95Å
O3	HO31	sing	0.00Å	0.95Å
O3	HO32	sing	0.00Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O1	CD	O2	73.5°	90.0°
O1	CD	O3	83.1°	90.0°
CD	O1	HO11	73.5°	90.0°
CD	O1	HO12	123.8°	90.0°
O2	CD	O3	102.1°	90.0°
CD	O2	HO21	73.5°	90.0°
CD	O2	HO22	123.8°	90.0°
CD	O3	HO31	83.1°	90.0°
CD	O3	HO32	119.4°	90.0°
HO11	O1	HO12	123.8°	90.0°
HO21	O2	HO22	123.8°	90.0°
HO31	O3	HO32	119.4°	90.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O1	CD	O2	O3	78.9°	90.0°
CD	O1	HO11	HO12	120.0°	90.0°
O1	CD	O2	HO21	180.0°	90.0°
O1	CD	O2	HO22	60.0°	90.0°
O1	CD	O3	HO31	180.0°	90.0°
O1	CD	O3	HO32	60.0°	90.0°
O2	CD	O1	HO11	180.0°	90.0°
O2	CD	O1	HO12	60.0°	90.0°
CD	O2	HO21	HO22	120.0°	90.0°
O2	CD	O3	HO31	108.6°	90.0°
O2	CD	O3	HO32	11.4°	90.0°
O3	CD	O1	HO11	75.1°	90.0°
O3	CD	O1	HO12	44.9°	90.0°
O3	CD	O2	HO21	101.1°	90.0°
O3	CD	O2	HO22	138.9°	90.0°
CD	O3	HO31	HO32	120.0°	90.0°

247536

PDB entries from 2026-01-14

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