CC7
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
O2 | C2 | doub | 1.22Å | 1.22Å | |
C2 | N3 | sing | 1.33Å | 1.34Å | |
C2 | N1 | sing | 1.35Å | 1.37Å | |
N3 | C4 | doub | 1.33Å | 1.34Å | |
C4 | N4 | sing | 1.38Å | 1.30Å | |
C4 | C5 | sing | 1.41Å | 1.39Å | |
C5 | C6 | doub | 1.35Å | 1.39Å | |
C6 | N1 | sing | 1.36Å | 1.40Å | |
N1 | C1' | sing | 1.46Å | 1.46Å | |
C1' | O4' | sing | 1.45Å | 1.43Å | |
C1' | C2' | sing | 1.55Å | 1.52Å | |
O4' | C4' | sing | 1.43Å | 1.40Å | |
C4' | C5' | sing | 1.52Å | 1.52Å | |
C4' | C3' | sing | 1.55Å | 1.52Å | |
C5' | O5' | sing | 1.45Å | 1.43Å | |
O5' | P | sing | 1.62Å | 1.63Å | |
P | O2P | sing | 1.61Å | 1.59Å | |
P | O1P | doub | 1.48Å | 1.48Å | |
P | O3' | sing | 1.63Å | 1.55Å | |
O3' | C3' | sing | 1.43Å | 1.43Å | |
C3' | C2' | sing | 1.53Å | 1.50Å | |
C2' | O2' | sing | 1.43Å | 1.41Å | |
N4 | HN4 | sing | 0.97Å | 1.00Å | |
N4 | HN4A | sing | 0.97Å | 1.00Å | |
C5 | H5 | sing | 1.08Å | 1.08Å | |
C6 | H6 | sing | 1.08Å | 1.08Å | |
C1' | H1' | sing | 1.09Å | 1.10Å | |
C4' | H4' | sing | 1.09Å | 1.10Å | |
C5' | H5' | sing | 1.09Å | 1.10Å | |
C5' | H5'A | sing | 1.09Å | 1.10Å | |
O2P | HO2P | sing | 0.97Å | 0.95Å | |
C3' | H3' | sing | 1.09Å | 1.10Å | |
C2' | H2' | sing | 1.09Å | 1.10Å | |
O2' | HO2' | sing | 0.97Å | 0.95Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
O2 | C2 | N3 | 120.9° | 119.4° |
O2 | C2 | N1 | 118.6° | 119.5° |
N3 | C2 | N1 | 120.5° | 121.1° |
C2 | N3 | C4 | 120.6° | 120.7° |
C2 | N1 | C6 | 120.3° | 120.3° |
C2 | N1 | C1' | 117.1° | 119.8° |
N3 | C4 | N4 | 118.5° | 120.2° |
N3 | C4 | C5 | 121.8° | 119.6° |
N4 | C4 | C5 | 119.8° | 120.2° |
C4 | N4 | HN4 | 110.7° | 120.0° |
C4 | N4 | HN4A | 124.7° | 120.0° |
C4 | C5 | C6 | 118.9° | 119.0° |
C4 | C5 | H5 | 120.6° | 120.5° |
C5 | C6 | N1 | 117.9° | 119.3° |
C6 | C5 | H5 | 120.5° | 120.6° |
C5 | C6 | H6 | 121.1° | 120.3° |
C6 | N1 | C1' | 122.6° | 119.9° |
N1 | C6 | H6 | 121.0° | 120.4° |
N1 | C1' | O4' | 102.2° | 109.9° |
N1 | C1' | C2' | 116.2° | 109.9° |
N1 | C1' | H1' | 109.3° | 109.8° |
O4' | C1' | C2' | 107.4° | 107.2° |
C1' | O4' | C4' | 105.4° | 105.4° |
O4' | C1' | H1' | 117.9° | 109.9° |
C1' | C2' | C3' | 100.4° | 103.3° |
C1' | C2' | O2' | 106.9° | 110.7° |
C2' | C1' | H1' | 104.3° | 110.1° |
C1' | C2' | H2' | 116.5° | 110.7° |
O4' | C4' | C5' | 111.2° | 116.6° |
O4' | C4' | C3' | 100.2° | 103.0° |
O4' | C4' | H4' | 112.9° | 109.6° |
C5' | C4' | C3' | 105.0° | 109.0° |
C4' | C5' | O5' | 109.4° | 106.7° |
C5' | C4' | H4' | 108.6° | 109.5° |
C4' | C5' | H5' | 109.5° | 110.0° |
C4' | C5' | H5'A | 109.5° | 110.0° |
C4' | C3' | O3' | 109.7° | 106.2° |
C4' | C3' | C2' | 100.4° | 100.9° |
C3' | C4' | H4' | 118.4° | 108.8° |
C4' | C3' | H3' | 117.0° | 111.4° |
C5' | O5' | P | 120.0° | 120.2° |
O5' | C5' | H5' | 109.5° | 110.0° |
O5' | C5' | H5'A | 109.5° | 110.0° |
O5' | P | O2P | 106.4° | 110.0° |
O5' | P | O1P | 111.1° | 110.0° |
O5' | P | O3' | 105.1° | 106.8° |
O2P | P | O1P | 116.2° | 110.0° |
O2P | P | O3' | 99.8° | 110.0° |
P | O2P | HO2P | 109.5° | 114.0° |
O1P | P | O3' | 117.1° | 110.1° |
P | O3' | C3' | 111.8° | 116.6° |
O3' | C3' | C2' | 114.8° | 114.6° |
O3' | C3' | H3' | 103.3° | 111.2° |
C3' | C2' | O2' | 109.0° | 110.6° |
C2' | C3' | H3' | 112.2° | 111.9° |
C3' | C2' | H2' | 114.6° | 110.7° |
O2' | C2' | H2' | 108.9° | 110.8° |
C2' | O2' | HO2' | 109.5° | 114.0° |
HN4 | N4 | HN4A | 124.7° | 120.0° |
H5' | C5' | H5'A | 109.4° | 110.1° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
O2 | C2 | N3 | N1 | 179.3° | 179.8° |
O2 | C2 | N3 | C4 | 179.9° | 179.9° |
O2 | C2 | N1 | C6 | 179.4° | 179.8° |
O2 | C2 | N1 | C1' | 0.3° | 0.0° |
C2 | N3 | C4 | N4 | 179.9° | 180.0° |
C2 | N3 | C4 | C5 | 0.7° | 0.1° |
N3 | C2 | N1 | C6 | 0.1° | 0.5° |
N3 | C2 | N1 | C1' | 179.0° | 179.8° |
N1 | C2 | N3 | C4 | 0.8° | 0.2° |
C2 | N1 | C6 | C5 | 0.7° | 0.5° |
C2 | N1 | C6 | C1' | 179.1° | 179.8° |
C2 | N1 | C1' | O4' | 97.5° | 53.6° |
C2 | N1 | C1' | C2' | 145.9° | 64.1° |
C2 | N1 | C6 | H6 | 179.3° | 179.8° |
C2 | N1 | C1' | H1' | 28.2° | 174.6° |
N3 | C4 | N4 | C5 | 179.4° | 180.0° |
N3 | C4 | C5 | C6 | 0.1° | 0.0° |
N3 | C4 | N4 | HN4 | 180.0° | 0.1° |
N3 | C4 | N4 | HN4A | 0.0° | 180.0° |
N3 | C4 | C5 | H5 | 179.9° | 179.9° |
N4 | C4 | C5 | C6 | 179.3° | 180.0° |
C4 | N4 | HN4 | HN4A | 180.0° | 179.9° |
N4 | C4 | C5 | H5 | 0.8° | 0.0° |
C4 | C5 | C6 | H5 | 180.0° | 179.9° |
C4 | C5 | C6 | N1 | 0.7° | 0.3° |
C5 | C4 | N4 | HN4 | 0.7° | 180.0° |
C5 | C4 | N4 | HN4A | 179.4° | 0.0° |
C4 | C5 | C6 | H6 | 179.3° | 180.0° |
C5 | C6 | N1 | H6 | 180.0° | 179.7° |
C5 | C6 | N1 | C1' | 179.7° | 179.7° |
C6 | N1 | C1' | O4' | 81.6° | 126.2° |
C6 | N1 | C1' | C2' | 35.0° | 116.1° |
N1 | C6 | C5 | H5 | 179.2° | 179.8° |
C6 | N1 | C1' | H1' | 152.7° | 5.1° |
N1 | C1' | O4' | C2' | 122.8° | 119.4° |
N1 | C1' | O4' | H1' | 119.9° | 121.0° |
N1 | C1' | C2' | H1' | 120.4° | 121.1° |
N1 | C1' | O4' | C4' | 144.4° | 146.2° |
N1 | C1' | C2' | C3' | 102.9° | 118.2° |
N1 | C1' | C2' | O2' | 143.4° | 123.4° |
C1' | N1 | C6 | H6 | 0.3° | 0.0° |
N1 | C1' | C2' | H2' | 21.5° | 0.2° |
O4' | C1' | C2' | H1' | 125.9° | 119.5° |
C1' | O4' | C4' | C5' | 155.2° | 163.0° |
C1' | O4' | C4' | C3' | 44.5° | 43.7° |
O4' | C1' | C2' | C3' | 10.8° | 1.2° |
O4' | C1' | C2' | O2' | 102.9° | 117.2° |
C1' | O4' | C4' | H4' | 82.4° | 72.0° |
O4' | C1' | C2' | H2' | 135.2° | 119.6° |
C2' | C1' | O4' | C4' | 21.6° | 26.8° |
C1' | C2' | C3' | C4' | 36.2° | 25.8° |
C1' | C2' | C3' | O3' | 153.8° | 139.4° |
C1' | C2' | C3' | O2' | 112.1° | 118.4° |
C1' | C2' | C3' | H2' | 125.6° | 118.4° |
C1' | C2' | O2' | H2' | 126.6° | 123.1° |
C1' | C2' | C3' | H3' | 88.8° | 92.8° |
C1' | C2' | O2' | HO2' | 91.4° | 61.5° |
O4' | C4' | C5' | C3' | 107.5° | 116.0° |
O4' | C4' | C5' | H4' | 124.8° | 125.1° |
O4' | C4' | C3' | H4' | 123.1° | 116.2° |
O4' | C4' | C5' | O5' | 167.4° | 176.9° |
O4' | C4' | C3' | O3' | 172.1° | 162.9° |
O4' | C4' | C3' | C2' | 50.9° | 43.1° |
C4' | O4' | C1' | H1' | 95.7° | 92.8° |
O4' | C4' | C5' | H5' | 47.4° | 63.8° |
O4' | C4' | C5' | H5'A | 72.6° | 57.5° |
O4' | C4' | C3' | H3' | 70.7° | 75.8° |
C5' | C4' | C3' | H4' | 121.4° | 119.4° |
C4' | C5' | O5' | H5' | 120.0° | 119.3° |
C4' | C5' | O5' | H5'A | 120.0° | 119.3° |
C4' | C5' | O5' | P | 48.9° | 49.7° |
C5' | C4' | C3' | O3' | 72.5° | 72.6° |
C5' | C4' | C3' | C2' | 166.3° | 167.5° |
C4' | C5' | H5' | H5'A | 120.0° | 121.3° |
C5' | C4' | C3' | H3' | 44.7° | 48.6° |
C3' | C4' | C5' | O5' | 59.8° | 67.1° |
C4' | C3' | O3' | P | 68.7° | 57.5° |
C4' | C3' | O3' | C2' | 112.1° | 110.5° |
C4' | C3' | O3' | H3' | 125.5° | 121.4° |
C4' | C3' | C2' | H3' | 125.0° | 118.6° |
C4' | C3' | C2' | O2' | 75.9° | 92.7° |
C3' | C4' | C5' | H5' | 60.1° | 52.2° |
C3' | C4' | C5' | H5'A | 179.9° | 173.6° |
C4' | C3' | C2' | H2' | 161.8° | 144.2° |
C5' | O5' | P | O2P | 64.7° | 85.3° |
C5' | O5' | P | O1P | 168.0° | 153.5° |
C5' | O5' | P | O3' | 40.5° | 34.0° |
O5' | C5' | C4' | H4' | 67.8° | 51.8° |
O5' | C5' | H5' | H5'A | 120.0° | 121.4° |
O5' | P | O2P | O1P | 124.2° | 121.2° |
O5' | P | O2P | O3' | 109.0° | 117.4° |
O5' | P | O1P | O3' | 120.7° | 117.4° |
O5' | P | O3' | C3' | 47.6° | 38.1° |
P | O5' | C5' | H5' | 71.1° | 69.6° |
P | O5' | C5' | H5'A | 169.0° | 169.0° |
O5' | P | O2P | HO2P | 63.0° | 60.0° |
O2P | P | O1P | O3' | 117.6° | 121.3° |
O2P | P | O3' | C3' | 62.5° | 81.3° |
O1P | P | O3' | C3' | 171.3° | 157.4° |
O1P | P | O2P | HO2P | 61.2° | 61.2° |
P | O3' | C3' | C2' | 179.1° | 168.0° |
O3' | P | O2P | HO2P | 172.0° | 177.4° |
P | O3' | C3' | H3' | 56.7° | 63.9° |
O3' | C3' | C2' | H3' | 117.4° | 127.8° |
O3' | C3' | C2' | O2' | 41.6° | 21.0° |
O3' | C3' | C4' | H4' | 49.0° | 46.7° |
O3' | C3' | C2' | H2' | 80.6° | 102.2° |
C3' | C2' | O2' | H2' | 125.6° | 123.1° |
C3' | C2' | C1' | H1' | 136.7° | 120.7° |
C2' | C3' | C4' | H4' | 72.2° | 73.2° |
C3' | C2' | O2' | HO2' | 160.8° | 175.4° |
O2' | C2' | C1' | H1' | 23.0° | 2.3° |
O2' | C2' | C3' | H3' | 159.1° | 148.7° |
H5 | C5 | C6 | H6 | 0.8° | 0.1° |
H1' | C1' | C2' | H2' | 99.0° | 120.9° |
H4' | C4' | C5' | H5' | 172.2° | 171.1° |
H4' | C4' | C5' | H5'A | 52.2° | 67.5° |
H4' | C4' | C3' | H3' | 166.2° | 167.9° |
H3' | C3' | C2' | H2' | 36.8° | 25.6° |
H2' | C2' | O2' | HO2' | 35.2° | 61.6° |