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C8R

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O2APAdoub1.50Å1.50Å
O1APAsing1.51Å1.51Å
C5'C4'sing1.52Å1.52Å
C5'O5'sing1.42Å1.42Å
PAO5'sing1.60Å1.60Å
PAO3Asing1.63Å1.63Å
C4'O4'sing1.43Å1.43Å
C4'C3'sing1.51Å1.51Å
O4'C1'sing1.43Å1.43Å
O3APBsing1.62Å1.62Å
N8C8sing1.35Å1.35Å
C1'N9sing1.47Å1.47Å
C1'C2'sing1.51Å1.51Å
O3'C3'sing1.43Å1.43Å
C3'C2'sing1.52Å1.52Å
O2'C2'sing1.43Å1.43Å
C8N9sing1.34Å1.34ÅAromatic
C8N7doub1.34Å1.34ÅAromatic
N9C4sing1.33Å1.33ÅAromatic
PBO1Bdoub1.53Å1.53Å
PBO2Bsing1.51Å1.51Å
PBO5Dsing1.62Å1.62Å
N7C5sing1.35Å1.35ÅAromatic
O5DC5Dsing1.44Å1.44Å
C4C5doub1.47Å1.47ÅAromatic
C4N3sing1.36Å1.36Å
C5DC4Dsing1.53Å1.53Å
C5C6sing1.47Å1.47Å
N3C2doub1.34Å1.34Å
C2N1sing1.34Å1.34Å
C6N1sing1.41Å1.41Å
C6O6doub1.34Å1.34Å
C4DC3Dsing1.52Å1.52Å
C4DO4Dsing1.44Å1.44Å
C3DO3Dsing1.44Å1.44Å
C3DC2Dsing1.52Å1.52Å
N1C1Dsing1.48Å1.48Å
C2DC1Dsing1.53Å1.53Å
C2DO2Dsing1.43Å1.43Å
O4DC1Dsing1.43Å1.43Å
C2H1sing1.08Å1.08Å
N8H2sing1.00Å1.00Å
N8H3sing1.00Å1.00Å
C1'H4sing1.10Å1.10Å
O1AH5sing0.95Å0.95Å
C1DH6sing1.10Å1.10Å
C2'H7sing1.10Å1.10Å
O2'H8sing0.95Å0.95Å
O2BH9sing0.95Å0.95Å
C2DH10sing1.10Å1.10Å
O2DH11sing0.95Å0.95Å
C3'H12sing1.10Å1.10Å
O3'H13sing0.95Å0.95Å
C3DH14sing1.10Å1.10Å
O3DH15sing0.95Å0.95Å
C4'H16sing1.10Å1.10Å
C4DH17sing1.10Å1.10Å
C5'H18sing1.10Å1.10Å
C5'H19sing1.10Å1.10Å
C5DH20sing1.10Å1.10Å
C5DH21sing1.10Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O2APAO1A117.3°117.3°
O2APAO5'109.6°109.6°
O2APAO3A105.1°105.1°
O1APAO5'110.4°110.4°
O1APAO3A110.8°110.8°
PAO1AH5109.5°109.5°
C4'C5'O5'111.8°111.8°
C5'C4'O4'113.1°113.1°
C5'C4'C3'113.8°113.8°
C5'C4'H16108.1°108.1°
C4'C5'H18108.9°108.9°
C4'C5'H19108.9°108.9°
C5'O5'PA117.0°117.0°
O5'C5'H18108.9°108.9°
O5'C5'H19108.9°108.9°
O5'PAO3A102.6°102.6°
PAO3APB127.8°127.8°
O4'C4'C3'104.1°104.1°
C4'O4'C1'108.4°108.4°
O4'C4'H16109.3°109.3°
C4'C3'O3'110.5°110.5°
C4'C3'C2'102.3°102.3°
C4'C3'H12110.3°110.3°
C3'C4'H16108.2°108.2°
O4'C1'N9102.8°102.8°
O4'C1'C2'106.2°106.2°
O4'C1'H4112.3°112.3°
O3APBO1B111.4°111.4°
O3APBO2B104.1°104.1°
O3APBO5D101.5°101.5°
N8C8N9123.1°123.1°
N8C8N7121.0°121.0°
C8N8H2109.5°109.5°
C8N8H3109.5°109.5°
N9C1'C2'112.3°112.3°
C1'N9C8128.0°128.0°
C1'N9C4125.7°125.7°
N9C1'H4111.8°111.8°
C1'C2'C3'105.5°105.5°
C1'C2'O2'105.8°105.8°
C2'C1'H4111.1°111.1°
C1'C2'H7111.7°111.7°
O3'C3'C2'111.4°111.4°
O3'C3'H12111.7°111.7°
C3'O3'H13109.5°109.5°
C3'C2'O2'108.8°108.8°
C3'C2'H7111.6°111.6°
C2'C3'H12110.3°110.3°
O2'C2'H7113.1°113.1°
C2'O2'H8109.5°109.5°
N9C8N7115.9°115.9°
C8N9C4106.2°106.2°
C8N7C5103.4°103.4°
N9C4C5105.8°105.8°
N9C4N3134.5°134.5°
O1BPBO2B121.2°121.2°
O1BPBO5D108.1°108.1°
O2BPBO5D108.7°108.7°
PBO2BH9109.5°109.5°
PBO5DC5D120.4°120.4°
N7C5C4108.8°108.8°
N7C5C6134.7°134.7°
O5DC5DC4D113.9°113.9°
O5DC5DH20108.4°108.4°
O5DC5DH21108.4°108.4°
C5C4N3119.7°119.7°
C4C5C6116.5°116.5°
C4N3C2121.0°121.0°
C5DC4DC3D108.9°108.9°
C5DC4DO4D114.4°114.4°
C5DC4DH17108.9°108.9°
C4DC5DH20108.4°108.4°
C4DC5DH21108.4°108.4°
C5C6N1118.7°118.7°
C5C6O6118.6°118.6°
N3C2N1124.2°124.2°
N3C2H1117.9°117.9°
C2N1C6119.9°119.9°
C2N1C1D119.2°119.2°
N1C2H1117.9°117.9°
N1C6O6122.7°122.7°
C6N1C1D120.9°120.9°
C3DC4DO4D105.2°105.2°
C4DC3DO3D109.3°109.3°
C4DC3DC2D104.9°104.9°
C4DC3DH14109.7°109.7°
C3DC4DH17109.1°109.1°
C4DO4DC1D111.7°111.7°
O4DC4DH17110.2°110.2°
O3DC3DC2D112.2°112.2°
O3DC3DH14110.9°110.9°
C3DO3DH15109.5°109.5°
C3DC2DC1D107.7°107.7°
C3DC2DO2D109.9°109.9°
C3DC2DH10108.9°108.9°
C2DC3DH14109.6°109.6°
N1C1DC2D106.4°106.4°
N1C1DO4D104.9°104.9°
N1C1DH6113.7°113.7°
C1DC2DO2D111.1°111.1°
C2DC1DO4D103.7°103.7°
C2DC1DH6112.8°112.8°
C1DC2DH10108.9°108.9°
O2DC2DH10110.2°110.2°
C2DO2DH11109.5°109.5°
O4DC1DH6114.4°114.4°
H2N8H3109.4°109.4°
H18C5'H19109.5°109.5°
H20C5DH21109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O2APAO1AO5'126.4°126.4°
O2APAO1AO3A120.6°120.6°
O2APAO5'C5'67.6°67.6°
O2APAO5'O3A111.3°111.3°
O2APAO3APB177.5°177.5°
O2APAO1AH50.0°0.0°
O1APAO5'C5'63.0°63.0°
O1APAO5'O3A118.1°118.1°
O1APAO3APB54.9°54.9°
C4'C5'O5'H18120.4°120.4°
C4'C5'O5'H19120.4°120.4°
C4'C5'O5'PA171.2°171.2°
C5'C4'O4'C3'124.1°124.1°
C5'C4'O4'H16120.5°120.5°
C5'C4'C3'H16120.2°120.2°
C5'C4'O4'C1'159.4°159.4°
C5'C4'C3'O3'82.0°82.0°
C5'C4'C3'C2'159.3°159.3°
C5'C4'C3'H1242.0°42.0°
C4'C5'H18H19119.0°119.0°
C5'O5'PAO3A178.9°178.9°
O5'C5'C4'O4'73.3°73.3°
O5'C5'C4'C3'45.3°45.3°
O5'C5'C4'H16165.6°165.6°
O5'C5'H18H19118.9°118.9°
O5'PAO3APB63.0°63.0°
O5'PAO1AH5126.4°126.4°
PAO5'C5'H1868.4°68.4°
PAO5'C5'H1950.9°50.9°
PAO3APBO1B12.9°12.9°
PAO3APBO2B145.1°145.1°
PAO3APBO5D102.0°102.0°
O3APAO1AH5120.6°120.6°
O4'C4'C3'H16116.2°116.2°
C4'O4'C1'N9137.9°137.9°
C4'O4'C1'C2'19.8°19.8°
O4'C4'C3'O3'154.4°154.4°
O4'C4'C3'C2'35.7°35.7°
C4'O4'C1'H4101.8°101.8°
O4'C4'C3'H1281.6°81.6°
O4'C4'C5'H1847.1°47.1°
O4'C4'C5'H19166.4°166.4°
C3'C4'O4'C1'35.3°35.3°
C4'C3'C2'C1'23.7°23.7°
C4'C3'O3'C2'112.9°112.9°
C4'C3'O3'H12123.2°123.2°
C4'C3'C2'H12117.4°117.4°
C4'C3'C2'O2'89.4°89.4°
C4'C3'C2'H7145.1°145.1°
C4'C3'O3'H13180.0°180.0°
C3'C4'C5'H18165.7°165.7°
C3'C4'C5'H1975.0°75.0°
O4'C1'N9C2'113.7°113.7°
O4'C1'N9H4120.7°120.7°
O4'C1'C2'H4122.4°122.4°
O4'C1'C2'C3'3.6°3.6°
O4'C1'C2'O2'111.6°111.6°
O4'C1'N9C894.7°94.7°
O4'C1'N9C480.5°80.5°
O4'C1'C2'H7125.0°125.0°
C1'O4'C4'H1680.2°80.1°
O3APBO1BO2B122.9°122.9°
O3APBO1BO5D110.7°110.7°
O3APBO2BO5D107.7°107.7°
O3APBO5DC5D64.7°64.7°
O3APBO2BH9126.3°126.3°
N8C8N9C1'3.0°3.0°
N8C8N9N7179.8°179.8°
N8C8N9C4178.9°178.9°
N8C8N7C5179.5°179.5°
C8N8H2H3120.0°120.0°
N9C1'C2'H4126.0°126.0°
N9C1'C2'C3'108.0°108.0°
N9C1'C2'O2'136.8°136.8°
C1'N9C8C4175.9°175.9°
C1'N9C8N7177.2°177.2°
C1'N9C4C5177.2°177.2°
C1'N9C4N34.1°4.1°
N9C1'C2'H713.4°13.4°
C1'C2'C3'O3'141.7°141.7°
C1'C2'C3'O2'113.1°113.1°
C1'C2'C3'H7121.5°121.5°
C1'C2'O2'H7122.5°122.5°
C2'C1'N9C8151.6°151.6°
C2'C1'N9C433.2°33.2°
C1'C2'O2'H8180.0°180.0°
C1'C2'C3'H1293.7°93.7°
O3'C3'C2'H12124.6°124.6°
O3'C3'C2'O2'28.6°28.6°
O3'C3'C2'H796.8°96.8°
O3'C3'C4'H1638.2°38.2°
C3'C2'O2'H7124.6°124.6°
C3'C2'C1'H4126.0°126.0°
C3'C2'O2'H867.1°67.1°
C2'C3'O3'H1367.1°67.1°
C2'C3'C4'H1680.5°80.5°
O2'C2'C1'H410.8°10.8°
O2'C2'C3'H12153.2°153.2°
N9C8N7C50.7°0.7°
C8N9C4C51.1°1.1°
C8N9C4N3179.9°179.9°
N9C8N8H2179.8°179.8°
N9C8N8H359.8°59.8°
C8N9C1'H426.0°26.0°
N7C8N9C41.3°1.3°
C8N7C5C40.1°0.1°
C8N7C5C6179.3°179.3°
N7C8N8H20.0°0.0°
N7C8N8H3120.0°120.0°
N9C4C5N70.8°0.8°
N9C4C5N3179.0°179.0°
N9C4C5C6179.8°179.8°
N9C4N3C2179.1°179.1°
C4N9C1'H4158.8°158.8°
O1BPBO2BO5D126.1°126.1°
O1BPBO5DC5D178.0°178.0°
O1BPBO2BH90.0°0.0°
O2BPBO5DC5D44.7°44.7°
PBO5DC5DC4D113.0°113.0°
O5DPBO2BH9126.1°126.1°
PBO5DC5DH20126.4°126.4°
PBO5DC5DH217.7°7.7°
N7C5C4C6179.4°179.4°
N7C5C4N3179.8°179.8°
N7C5C6N1179.8°179.8°
N7C5C6O61.9°1.9°
O5DC5DC4DH20120.6°120.6°
O5DC5DC4DH21120.6°120.6°
O5DC5DC4DC3D162.8°162.8°
O5DC5DC4DO4D45.4°45.4°
O5DC5DC4DH1778.4°78.4°
O5DC5DH20H21118.0°118.0°
C5C4N3C20.4°0.4°
C4C5C6N11.0°1.0°
C4C5C6O6178.9°178.9°
N3C4C5C60.9°0.9°
C4N3C2N10.2°0.2°
C4N3C2H1179.8°179.8°
C5DC4DC3DO4D123.0°123.0°
C5DC4DC3DH17118.8°118.8°
C5DC4DO4DH17123.1°123.1°
C5DC4DC3DO3D133.7°133.7°
C5DC4DC3DC2D105.8°105.8°
C5DC4DO4DC1D92.2°92.2°
C5DC4DC3DH1411.8°11.8°
C4DC5DH20H21118.0°118.0°
C5C6N1C20.8°0.8°
C5C6N1O6177.8°177.8°
C5C6N1C1D178.2°178.2°
N3C2N1H1180.0°180.0°
N3C2N1C60.4°0.4°
N3C2N1C1D177.8°177.8°
C2N1C6C1D177.4°177.4°
C2N1C6O6178.6°178.6°
C2N1C1DC2D134.0°134.0°
C2N1C1DO4D24.4°24.4°
C2N1C1DH6101.2°101.2°
C6N1C1DC2D43.4°43.4°
C6N1C1DO4D152.9°152.9°
C6N1C2H1179.6°179.6°
C6N1C1DH681.4°81.4°
O6C6N1C1D4.0°4.0°
C3DC4DO4DH17117.5°117.5°
C4DC3DO3DC2D115.9°115.9°
C4DC3DO3DH14121.1°121.1°
C4DC3DC2DH14117.7°117.7°
C4DC3DC2DC1D2.8°2.8°
C4DC3DC2DO2D124.0°124.0°
C3DC4DO4DC1D27.3°27.3°
C4DC3DC2DH10115.2°115.2°
C4DC3DO3DH15180.0°180.0°
C3DC4DC5DH2042.1°42.1°
C3DC4DC5DH2176.6°76.6°
O4DC4DC3DO3D103.3°103.3°
O4DC4DC3DC2D17.2°17.2°
C4DO4DC1DN186.5°86.5°
C4DO4DC1DC2D25.0°25.0°
C4DO4DC1DH6148.3°148.3°
O4DC4DC3DH14134.9°134.9°
O4DC4DC5DH2075.2°75.2°
O4DC4DC5DH21166.1°166.1°
O3DC3DC2DH14123.7°123.7°
O3DC3DC2DC1D115.7°115.7°
O3DC3DC2DO2D5.5°5.5°
O3DC3DC2DH10126.3°126.3°
O3DC3DC4DH1714.9°14.9°
C3DC2DC1DN197.8°97.8°
C3DC2DC1DO2D120.4°120.4°
C3DC2DC1DH10118.0°118.0°
C3DC2DO2DH10120.1°120.1°
C3DC2DC1DO4D12.6°12.6°
C3DC2DC1DH6136.9°136.9°
C3DC2DO2DH11180.0°180.0°
C2DC3DO3DH1564.1°64.1°
C2DC3DC4DH17135.4°135.4°
N1C1DC2DO4D110.3°110.3°
N1C1DC2DH6125.3°125.3°
N1C1DC2DO2D141.8°141.8°
N1C1DO4DH6125.2°125.2°
C1DN1C2H12.2°2.2°
N1C1DC2DH1020.2°20.2°
C1DC2DO2DH10120.8°120.8°
C2DC1DO4DH6123.3°123.3°
C1DC2DO2DH1160.9°60.9°
C1DC2DC3DH14120.5°120.5°
O2DC2DC1DO4D107.8°107.8°
O2DC2DC1DH616.5°16.5°
O2DC2DC3DH14118.3°118.3°
O4DC1DC2DH10130.6°130.6°
C1DO4DC4DH17144.7°144.7°
H4C1'C2'H7112.6°112.6°
H6C1DC2DH10105.1°105.1°
H7C2'O2'H857.5°57.5°
H7C2'C3'H1227.8°27.8°
H10C2DO2DH1159.9°59.9°
H10C2DC3DH142.5°2.5°
H12C3'O3'H1356.8°56.8°
H12C3'C4'H16162.1°162.2°
H14C3DO3DH1558.9°58.9°
H14C3DC4DH17106.9°106.9°
H16C4'C5'H1874.1°74.1°
H16C4'C5'H1945.3°45.2°
H17C4DC5DH20161.0°161.0°
H17C4DC5DH2142.3°42.3°

218853

PDB entries from 2024-04-24

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