C8M
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| N1 | C1 | sing | 1.35Å | 1.35Å | |
| C1 | C4 | sing | 1.51Å | 1.43Å | |
| C1 | O1 | doub | 1.21Å | 1.19Å | |
| C4 | C5 | sing | 1.53Å | 1.45Å | |
| C5 | N2 | sing | 1.47Å | 1.35Å | |
| N2 | C6 | sing | 1.47Å | 1.38Å | |
| N2 | C5' | sing | 1.47Å | 1.42Å | |
| C5' | C4' | sing | 1.53Å | 1.51Å | |
| C4' | O4' | sing | 1.44Å | 1.13Å | |
| C4' | C3' | sing | 1.54Å | 1.54Å | |
| O4' | C1' | sing | 1.44Å | 1.29Å | |
| C1' | N5 | sing | 1.47Å | 1.38Å | |
| C1' | C2' | sing | 1.55Å | 1.53Å | |
| N5 | C11 | sing | 1.37Å | 1.32Å | Aromatic |
| N5 | C7 | sing | 1.36Å | 1.28Å | Aromatic |
| C11 | N4 | doub | 1.33Å | 1.26Å | Aromatic |
| C11 | C12 | sing | 1.41Å | 1.34Å | Aromatic |
| N4 | C10 | sing | 1.32Å | 1.21Å | Aromatic |
| C10 | N3 | doub | 1.32Å | 1.34Å | Aromatic |
| N3 | C9 | sing | 1.33Å | 1.33Å | Aromatic |
| C9 | N7 | sing | 1.38Å | 1.40Å | |
| C9 | C12 | doub | 1.41Å | 1.43Å | Aromatic |
| C12 | N6 | sing | 1.36Å | 1.28Å | Aromatic |
| N6 | C7 | doub | 1.30Å | 1.19Å | Aromatic |
| C7 | C8 | sing | 1.51Å | 1.40Å | |
| C2' | O2' | sing | 1.43Å | 1.22Å | |
| C2' | C3' | sing | 1.55Å | 1.56Å | |
| C3' | O3' | sing | 1.43Å | 1.25Å | |
| N1 | HN1 | sing | 0.97Å | 1.00Å | |
| N1 | HN1A | sing | 0.97Å | 1.00Å | |
| C4 | H4 | sing | 1.09Å | 1.10Å | |
| C4 | H4A | sing | 1.09Å | 1.10Å | |
| C5 | H5 | sing | 1.09Å | 1.10Å | |
| C5 | H5A | sing | 1.09Å | 1.10Å | |
| C6 | H6 | sing | 1.09Å | 1.10Å | |
| C6 | H6A | sing | 1.09Å | 1.10Å | |
| C6 | H6B | sing | 1.09Å | 1.10Å | |
| C5' | H5' | sing | 1.09Å | 1.10Å | |
| C5' | H5'A | sing | 1.09Å | 1.10Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| C10 | H10 | sing | 1.08Å | 1.08Å | |
| N7 | HN7 | sing | 0.97Å | 1.00Å | |
| N7 | HN7A | sing | 0.97Å | 1.00Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| O2' | HO2' | sing | 0.97Å | 0.95Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| C8 | H8 | sing | 1.09Å | 1.10Å | |
| C8 | H8A | sing | 1.09Å | 1.10Å | |
| C8 | H8B | sing | 1.09Å | 1.10Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| N1 | C1 | C4 | 126.9° | 120.0° |
| N1 | C1 | O1 | 116.4° | 120.0° |
| C1 | N1 | HN1 | 110.5° | 120.0° |
| C1 | N1 | HN1A | 124.8° | 119.9° |
| C4 | C1 | O1 | 116.7° | 120.0° |
| C1 | C4 | C5 | 115.5° | 109.5° |
| C1 | C4 | H4 | 107.5° | 109.5° |
| C1 | C4 | H4A | 106.2° | 109.5° |
| C4 | C5 | N2 | 119.3° | 109.5° |
| C5 | C4 | H4 | 107.5° | 109.5° |
| C5 | C4 | H4A | 106.1° | 109.4° |
| C4 | C5 | H5 | 106.3° | 109.5° |
| C4 | C5 | H5A | 104.0° | 109.4° |
| C5 | N2 | C6 | 119.7° | 111.0° |
| C5 | N2 | C5' | 113.8° | 111.0° |
| N2 | C5 | H5 | 106.3° | 109.4° |
| N2 | C5 | H5A | 104.0° | 109.5° |
| C6 | N2 | C5' | 107.7° | 111.0° |
| N2 | C6 | H6 | 109.5° | 109.5° |
| N2 | C6 | H6A | 109.5° | 109.5° |
| N2 | C6 | H6B | 109.5° | 109.5° |
| N2 | C5' | C4' | 120.7° | 109.5° |
| N2 | C5' | H5' | 105.9° | 109.5° |
| N2 | C5' | H5'A | 103.3° | 109.5° |
| C5' | C4' | O4' | 129.5° | 109.9° |
| C5' | C4' | C3' | 102.4° | 109.9° |
| C4' | C5' | H5' | 105.9° | 109.4° |
| C4' | C5' | H5'A | 103.3° | 109.5° |
| C5' | C4' | H4' | 101.9° | 109.8° |
| O4' | C4' | C3' | 112.8° | 107.3° |
| C4' | O4' | C1' | 116.4° | 107.0° |
| O4' | C4' | H4' | 88.2° | 109.9° |
| C4' | C3' | C2' | 91.1° | 104.2° |
| C4' | C3' | O3' | 113.7° | 110.5° |
| C3' | C4' | H4' | 123.4° | 110.0° |
| C4' | C3' | H3' | 118.6° | 110.5° |
| O4' | C1' | N5 | 118.4° | 110.6° |
| O4' | C1' | C2' | 103.8° | 103.5° |
| O4' | C1' | H1' | 109.4° | 110.6° |
| N5 | C1' | C2' | 114.6° | 110.6° |
| C1' | N5 | C11 | 122.8° | 126.3° |
| C1' | N5 | C7 | 134.4° | 126.3° |
| N5 | C1' | H1' | 97.2° | 110.5° |
| C1' | C2' | O2' | 122.7° | 110.9° |
| C1' | C2' | C3' | 101.1° | 102.1° |
| C2' | C1' | H1' | 113.7° | 110.8° |
| C1' | C2' | H2' | 108.1° | 110.9° |
| C11 | N5 | C7 | 102.7° | 107.4° |
| N5 | C11 | N4 | 136.6° | 134.9° |
| N5 | C11 | C12 | 109.8° | 106.0° |
| N5 | C7 | N6 | 113.1° | 110.0° |
| N5 | C7 | C8 | 130.1° | 125.0° |
| N4 | C11 | C12 | 113.6° | 119.1° |
| C11 | N4 | C10 | 128.4° | 120.7° |
| C11 | C12 | C9 | 120.6° | 118.2° |
| C11 | C12 | N6 | 102.3° | 107.1° |
| N4 | C10 | N3 | 124.9° | 122.4° |
| N4 | C10 | H10 | 117.6° | 118.8° |
| C10 | N3 | C9 | 113.8° | 121.2° |
| N3 | C10 | H10 | 117.6° | 118.8° |
| N3 | C9 | N7 | 120.5° | 120.8° |
| N3 | C9 | C12 | 118.8° | 118.4° |
| N7 | C9 | C12 | 120.7° | 120.8° |
| C9 | N7 | HN7 | 109.5° | 120.0° |
| C9 | N7 | HN7A | 109.5° | 120.0° |
| C9 | C12 | N6 | 137.1° | 134.7° |
| C12 | N6 | C7 | 112.1° | 109.4° |
| N6 | C7 | C8 | 116.8° | 125.0° |
| C7 | C8 | H8 | 109.5° | 109.4° |
| C7 | C8 | H8A | 109.5° | 109.5° |
| C7 | C8 | H8B | 109.5° | 109.5° |
| O2' | C2' | C3' | 113.2° | 110.9° |
| O2' | C2' | H2' | 94.4° | 110.8° |
| C2' | O2' | HO2' | 109.5° | 114.0° |
| C2' | C3' | O3' | 110.3° | 110.5° |
| C3' | C2' | H2' | 118.6° | 110.9° |
| C2' | C3' | H3' | 121.6° | 110.5° |
| O3' | C3' | H3' | 102.0° | 110.5° |
| C3' | O3' | HO3' | 109.5° | 114.0° |
| HN1 | N1 | HN1A | 124.7° | 120.1° |
| H4 | C4 | H4A | 114.3° | 109.4° |
| H5 | C5 | H5A | 117.6° | 109.5° |
| H6 | C6 | H6A | 109.5° | 109.5° |
| H6 | C6 | H6B | 109.5° | 109.5° |
| H6A | C6 | H6B | 109.5° | 109.5° |
| H5' | C5' | H5'A | 118.8° | 109.5° |
| HN7 | N7 | HN7A | 109.5° | 119.9° |
| H8 | C8 | H8A | 109.4° | 109.5° |
| H8 | C8 | H8B | 109.4° | 109.5° |
| H8A | C8 | H8B | 109.5° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| N1 | C1 | C4 | O1 | 179.6° | 180.0° |
| N1 | C1 | C4 | C5 | 111.4° | 180.0° |
| C1 | N1 | HN1 | HN1A | 180.0° | 179.7° |
| N1 | C1 | C4 | H4 | 128.6° | 60.0° |
| N1 | C1 | C4 | H4A | 5.9° | 60.0° |
| C1 | C4 | C5 | H4 | 120.0° | 120.1° |
| C1 | C4 | C5 | H4A | 117.3° | 120.0° |
| C1 | C4 | C5 | N2 | 74.9° | 180.0° |
| C4 | C1 | N1 | HN1 | 0.0° | 0.0° |
| C4 | C1 | N1 | HN1A | 180.0° | 179.7° |
| C1 | C4 | H4 | H4A | 117.5° | 120.0° |
| C1 | C4 | C5 | H5 | 45.1° | 60.0° |
| C1 | C4 | C5 | H5A | 169.9° | 60.0° |
| O1 | C1 | C4 | C5 | 69.0° | 0.1° |
| O1 | C1 | N1 | HN1 | 179.6° | 180.0° |
| O1 | C1 | N1 | HN1A | 0.4° | 0.2° |
| O1 | C1 | C4 | H4 | 51.0° | 120.0° |
| O1 | C1 | C4 | H4A | 173.7° | 120.0° |
| C4 | C5 | N2 | H5 | 120.0° | 120.0° |
| C4 | C5 | N2 | H5A | 115.2° | 120.0° |
| C4 | C5 | N2 | C6 | 46.0° | 66.0° |
| C4 | C5 | N2 | C5' | 175.3° | 170.0° |
| C5 | C4 | H4 | H4A | 117.5° | 120.0° |
| C4 | C5 | H5 | H5A | 115.9° | 120.0° |
| C5 | N2 | C6 | C5' | 132.0° | 123.9° |
| C5 | N2 | C5' | C4' | 171.5° | 170.0° |
| N2 | C5 | C4 | H4 | 165.1° | 60.0° |
| N2 | C5 | C4 | H4A | 42.4° | 60.0° |
| N2 | C5 | H5 | H5A | 115.9° | 120.0° |
| C5 | N2 | C6 | H6 | 162.1° | 60.0° |
| C5 | N2 | C6 | H6A | 77.9° | 180.0° |
| C5 | N2 | C6 | H6B | 42.1° | 60.0° |
| C5 | N2 | C5' | H5' | 51.5° | 50.0° |
| C5 | N2 | C5' | H5'A | 74.0° | 70.0° |
| C6 | N2 | C5' | C4' | 53.4° | 66.1° |
| C6 | N2 | C5 | H5 | 166.1° | 173.9° |
| C6 | N2 | C5 | H5A | 69.2° | 53.9° |
| N2 | C6 | H6 | H6A | 120.0° | 120.0° |
| N2 | C6 | H6 | H6B | 120.0° | 120.0° |
| N2 | C6 | H6A | H6B | 120.0° | 120.0° |
| C6 | N2 | C5' | H5' | 173.4° | 173.9° |
| C6 | N2 | C5' | H5'A | 61.1° | 53.9° |
| N2 | C5' | C4' | H5' | 120.0° | 120.0° |
| N2 | C5' | C4' | H5'A | 114.5° | 120.1° |
| N2 | C5' | C4' | O4' | 45.7° | 66.4° |
| N2 | C5' | C4' | C3' | 179.6° | 175.7° |
| C5' | N2 | C5 | H5 | 64.6° | 50.0° |
| C5' | N2 | C5 | H5A | 60.1° | 70.0° |
| C5' | N2 | C6 | H6 | 65.9° | 176.1° |
| C5' | N2 | C6 | H6A | 54.1° | 56.1° |
| C5' | N2 | C6 | H6B | 174.1° | 63.9° |
| N2 | C5' | H5' | H5'A | 115.4° | 120.1° |
| N2 | C5' | C4' | H4' | 51.9° | 54.6° |
| C5' | C4' | O4' | C3' | 130.3° | 119.5° |
| C5' | C4' | O4' | H4' | 104.0° | 121.0° |
| C5' | C4' | C3' | H4' | 113.4° | 121.0° |
| C5' | C4' | O4' | C1' | 104.6° | 146.0° |
| C5' | C4' | C3' | C2' | 105.8° | 121.5° |
| C5' | C4' | C3' | O3' | 141.5° | 119.8° |
| C4' | C5' | H5' | H5'A | 115.4° | 119.9° |
| C5' | C4' | C3' | H3' | 21.6° | 2.8° |
| O4' | C4' | C3' | H4' | 103.6° | 119.5° |
| C4' | O4' | C1' | N5 | 129.1° | 158.5° |
| C4' | O4' | C1' | C2' | 0.7° | 40.1° |
| O4' | C4' | C3' | C2' | 37.2° | 2.0° |
| O4' | C4' | C3' | O3' | 75.6° | 120.7° |
| O4' | C4' | C5' | H5' | 74.3° | 53.6° |
| O4' | C4' | C5' | H5'A | 160.1° | 173.5° |
| C4' | O4' | C1' | H1' | 121.0° | 78.6° |
| O4' | C4' | C3' | H3' | 164.6° | 116.7° |
| C3' | C4' | O4' | C1' | 25.7° | 26.5° |
| C4' | C3' | C2' | C1' | 32.1° | 20.9° |
| C4' | C3' | C2' | O2' | 165.2° | 139.1° |
| C4' | C3' | C2' | O3' | 115.9° | 118.7° |
| C4' | C3' | C2' | H3' | 125.0° | 118.7° |
| C4' | C3' | O3' | H3' | 128.8° | 122.6° |
| C3' | C4' | C5' | H5' | 59.6° | 64.3° |
| C3' | C4' | C5' | H5'A | 66.0° | 55.7° |
| C4' | C3' | C2' | H2' | 85.7° | 97.3° |
| C4' | C3' | O3' | HO3' | 40.6° | 180.0° |
| O4' | C1' | N5 | C2' | 123.1° | 114.1° |
| O4' | C1' | N5 | H1' | 116.7° | 122.9° |
| O4' | C1' | C2' | H1' | 118.8° | 118.6° |
| O4' | C1' | N5 | C11 | 46.1° | 136.4° |
| O4' | C1' | N5 | C7 | 134.0° | 43.2° |
| O4' | C1' | C2' | O2' | 151.7° | 155.2° |
| O4' | C1' | C2' | C3' | 24.6° | 37.0° |
| C1' | O4' | C4' | H4' | 151.4° | 93.1° |
| O4' | C1' | C2' | H2' | 100.6° | 81.2° |
| N5 | C1' | C2' | H1' | 110.6° | 122.9° |
| C1' | N5 | C11 | C7 | 180.0° | 179.7° |
| C1' | N5 | C11 | N4 | 0.1° | 0.1° |
| C1' | N5 | C11 | C12 | 179.9° | 180.0° |
| C1' | N5 | C7 | N6 | 179.9° | 179.8° |
| C1' | N5 | C7 | C8 | 0.2° | 0.0° |
| N5 | C1' | C2' | O2' | 77.7° | 86.3° |
| N5 | C1' | C2' | C3' | 155.2° | 155.5° |
| N5 | C1' | C2' | H2' | 30.0° | 37.3° |
| C2' | C1' | N5 | C11 | 77.0° | 109.5° |
| C2' | C1' | N5 | C7 | 103.0° | 70.8° |
| C1' | C2' | O2' | C3' | 121.6° | 112.7° |
| C1' | C2' | O2' | H2' | 114.7° | 123.7° |
| C1' | C2' | C3' | H2' | 117.8° | 118.2° |
| C1' | C2' | C3' | O3' | 83.7° | 97.8° |
| C1' | C2' | O2' | HO2' | 150.6° | 179.9° |
| C1' | C2' | C3' | H3' | 157.1° | 139.6° |
| N5 | C11 | N4 | C12 | 180.0° | 179.9° |
| N5 | C11 | N4 | C10 | 179.9° | 180.0° |
| N5 | C11 | C12 | C9 | 180.0° | 180.0° |
| N5 | C11 | C12 | N6 | 0.1° | 0.1° |
| C11 | N5 | C7 | N6 | 0.2° | 0.5° |
| C11 | N5 | C7 | C8 | 179.8° | 179.7° |
| C11 | N5 | C1' | H1' | 162.8° | 13.5° |
| C7 | N5 | C11 | N4 | 179.9° | 179.8° |
| C7 | N5 | C11 | C12 | 0.1° | 0.3° |
| N5 | C7 | N6 | C12 | 0.1° | 0.4° |
| N5 | C7 | N6 | C8 | 180.0° | 179.9° |
| C7 | N5 | C1' | H1' | 17.2° | 166.1° |
| N5 | C7 | C8 | H8 | 137.8° | 90.0° |
| N5 | C7 | C8 | H8A | 102.2° | 150.0° |
| N5 | C7 | C8 | H8B | 17.8° | 30.0° |
| C11 | N4 | C10 | N3 | 0.0° | 0.0° |
| N4 | C11 | C12 | C9 | 0.0° | 0.1° |
| N4 | C11 | C12 | N6 | 179.9° | 180.0° |
| C11 | N4 | C10 | H10 | 180.0° | 180.0° |
| C12 | C11 | N4 | C10 | 0.0° | 0.1° |
| C11 | C12 | C9 | N3 | 0.0° | 0.1° |
| C11 | C12 | C9 | N7 | 179.9° | 180.0° |
| C11 | C12 | C9 | N6 | 179.9° | 179.8° |
| C11 | C12 | N6 | C7 | 0.0° | 0.2° |
| N4 | C10 | N3 | H10 | 180.0° | 180.0° |
| N4 | C10 | N3 | C9 | 0.0° | 0.0° |
| C10 | N3 | C9 | N7 | 179.9° | 179.9° |
| C10 | N3 | C9 | C12 | 0.0° | 0.0° |
| N3 | C9 | N7 | C12 | 180.0° | 179.9° |
| N3 | C9 | C12 | N6 | 179.9° | 179.9° |
| C9 | N3 | C10 | H10 | 180.0° | 180.0° |
| N3 | C9 | N7 | HN7 | 16.5° | 0.0° |
| N3 | C9 | N7 | HN7A | 136.5° | 180.0° |
| N7 | C9 | C12 | N6 | 0.2° | 0.2° |
| C9 | N7 | HN7 | HN7A | 120.0° | 180.0° |
| C9 | C12 | N6 | C7 | 179.9° | 179.7° |
| C12 | C9 | N7 | HN7 | 163.5° | 180.0° |
| C12 | C9 | N7 | HN7A | 43.5° | 0.1° |
| C12 | N6 | C7 | C8 | 179.8° | 179.7° |
| N6 | C7 | C8 | H8 | 42.2° | 89.9° |
| N6 | C7 | C8 | H8A | 77.8° | 30.2° |
| N6 | C7 | C8 | H8B | 162.2° | 150.2° |
| C7 | C8 | H8 | H8A | 120.0° | 120.0° |
| C7 | C8 | H8 | H8B | 120.0° | 120.0° |
| C7 | C8 | H8A | H8B | 120.0° | 120.0° |
| O2' | C2' | C3' | H2' | 109.1° | 123.6° |
| O2' | C2' | C3' | O3' | 49.3° | 20.4° |
| O2' | C2' | C1' | H1' | 32.9° | 36.6° |
| O2' | C2' | C3' | H3' | 69.8° | 102.2° |
| C2' | C3' | O3' | H3' | 130.5° | 122.6° |
| C2' | C3' | C4' | H4' | 140.8° | 117.5° |
| C3' | C2' | C1' | H1' | 94.2° | 81.6° |
| C3' | C2' | O2' | HO2' | 87.8° | 67.3° |
| C2' | C3' | O3' | HO3' | 60.0° | 65.2° |
| O3' | C3' | C4' | H4' | 28.0° | 1.2° |
| O3' | C3' | C2' | H2' | 158.4° | 144.0° |
| H4 | C4 | C5 | H5 | 74.9° | 179.9° |
| H4 | C4 | C5 | H5A | 49.9° | 60.0° |
| H4A | C4 | C5 | H5 | 162.4° | 60.0° |
| H4A | C4 | C5 | H5A | 72.8° | 180.0° |
| H6 | C6 | H6A | H6B | 120.0° | 120.0° |
| H5' | C5' | C4' | H4' | 171.9° | 174.6° |
| H5'A | C5' | C4' | H4' | 62.5° | 65.5° |
| H4' | C4' | C3' | H3' | 91.8° | 123.8° |
| H1' | C1' | C2' | H2' | 140.6° | 160.2° |
| H2' | C2' | O2' | HO2' | 35.8° | 56.4° |
| H2' | C2' | C3' | H3' | 39.3° | 21.4° |
| H3' | C3' | O3' | HO3' | 169.4° | 57.3° |
| H8 | C8 | H8A | H8B | 120.0° | 120.0° |
