Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

C8D

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O1C6doub1.22Å1.20Å
C6O2sing1.35Å1.33Å
C6N1sing1.35Å1.36Å
O2C7sing1.45Å1.44Å
C7C8sing1.54Å1.53Å
C7C11sing1.55Å1.54Å
C8C9sing1.54Å1.54Å
C9C10sing1.54Å1.53Å
C10C11sing1.55Å1.54Å
N1C5sing1.47Å1.47Å
C5C2sing1.53Å1.58Å
C5C12sing1.51Å1.56Å
C2C1sing1.53Å1.54Å
C2C3sing1.53Å1.54Å
C2C4sing1.53Å1.53Å
C12O3doub1.21Å1.23Å
C12N2sing1.35Å1.38Å
N2C16sing1.47Å1.48Å
N2C13sing1.48Å1.46Å
C16C17sing1.51Å1.54Å
C16C15sing1.54Å1.53Å
C17N3sing1.35Å1.37Å
C17O4doub1.21Å1.24Å
N3C18sing1.47Å1.47Å
C18C19sing1.53Å1.56Å
C18Bsing1.57Å1.59Å
C19C20sing1.53Å1.55Å
C20O5sing1.43Å1.41Å
BO6sing1.42Å1.33Å
BO8sing1.27Å1.53Å
C13C14sing1.55Å1.55Å
C14C15sing1.55Å1.54Å
C14O7sing1.43Å1.44Å
O7C21sing1.35Å1.41Å
C21N4sing1.32Å1.36ÅAromatic
C21C29doub1.41Å1.42ÅAromatic
N4C22doub1.33Å1.36ÅAromatic
C22C23sing1.36Å1.40ÅAromatic
C23C24doub1.41Å1.41ÅAromatic
C24C29sing1.42Å1.43ÅAromatic
C24C25sing1.40Å1.42ÅAromatic
C29C28sing1.40Å1.42ÅAromatic
C25C26doub1.36Å1.41ÅAromatic
C26C27sing1.39Å1.42ÅAromatic
C27C28doub1.36Å1.42ÅAromatic
N1H1sing0.97Å1.00Å
C7H7sing1.09Å1.10Å
C8H81Csing1.09Å1.10Å
C8H82Csing1.09Å1.10Å
C11H111sing1.09Å1.10Å
C11H112sing1.09Å1.10Å
C9H91Csing1.09Å1.10Å
C9H92Csing1.09Å1.10Å
C10H101sing1.09Å1.10Å
C10H102sing1.09Å1.10Å
C5H5sing1.09Å1.10Å
C1H11Csing1.09Å1.10Å
C1H12Csing1.09Å1.10Å
C1H13Csing1.09Å1.10Å
C3H31Csing1.09Å1.10Å
C3H32Csing1.09Å1.10Å
C3H33Csing1.09Å1.10Å
C4H41Csing1.09Å1.10Å
C4H42Csing1.09Å1.10Å
C4H43Csing1.09Å1.10Å
C16H16sing1.09Å1.10Å
C13H131sing1.09Å1.10Å
C13H132sing1.09Å1.10Å
C15H151sing1.09Å1.10Å
C15H152sing1.09Å1.10Å
N3H3sing0.97Å1.00Å
C18H18sing1.09Å1.10Å
C19H191sing1.09Å1.10Å
C19H192sing1.09Å1.10Å
C20H201sing1.09Å1.10Å
C20H202sing1.09Å1.10Å
O5HAsing0.97Å0.95Å
O6H6sing0.97Å0.95Å
C14H14sing1.09Å1.10Å
C22H22sing1.08Å1.08Å
C23H23sing1.08Å1.08Å
C25H25sing1.08Å1.08Å
C28H28sing1.08Å1.08Å
C26H26sing1.08Å1.08Å
C27H27sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O1C6O2120.7°120.0°
O1C6N1124.6°120.0°
O2C6N1114.7°120.0°
C6O2C7121.0°117.0°
C6N1C5120.3°120.0°
C6N1H1119.8°120.1°
O2C7C8110.6°110.5°
O2C7C11113.7°110.5°
O2C7H7104.5°110.4°
C8C7C11105.6°104.2°
C7C8C9106.9°106.6°
C8C7H7112.9°110.4°
C7C8H81C110.4°110.0°
C7C8H82C110.9°110.1°
C7C11C10106.3°102.8°
C11C7H7109.7°110.6°
C7C11H111110.6°110.7°
C7C11H112111.2°110.7°
C8C9C10107.8°106.6°
C9C8H81C110.3°110.0°
C9C8H82C110.9°110.1°
C8C9H91C110.0°110.0°
C8C9H92C110.4°110.0°
C9C10C11106.3°104.2°
C10C9H91C110.0°110.1°
C10C9H92C110.4°110.0°
C9C10H101110.6°110.5°
C9C10H102111.3°110.5°
C10C11H111110.5°110.8°
C10C11H112111.2°110.7°
C11C10H101110.5°110.5°
C11C10H102111.2°110.5°
N1C5C2115.8°109.5°
N1C5C12104.2°109.5°
C5N1H1119.9°119.9°
N1C5H5109.1°109.5°
C2C5C12110.0°109.5°
C5C2C1113.0°109.5°
C5C2C3111.0°109.4°
C5C2C4113.4°109.5°
C2C5H5103.2°109.4°
C5C12O3118.5°120.0°
C5C12N2119.5°120.0°
C12C5H5115.0°109.5°
C1C2C3108.1°109.5°
C1C2C4105.7°109.5°
C2C1H11C109.5°109.5°
C2C1H12C109.5°109.5°
C2C1H13C109.4°109.4°
C3C2C4105.2°109.5°
C2C3H31C109.5°109.5°
C2C3H32C109.4°109.4°
C2C3H33C109.5°109.4°
C2C4H41C109.5°109.5°
C2C4H42C109.5°109.5°
C2C4H43C109.4°109.5°
O3C12N2121.9°120.0°
C12N2C16122.9°125.7°
C12N2C13126.2°125.7°
C16N2C13110.9°108.6°
N2C16C17112.8°109.9°
N2C16C15103.9°107.3°
N2C16H16109.8°109.9°
N2C13C14101.6°104.8°
N2C13H131112.2°110.3°
N2C13H132113.8°110.3°
C17C16C15105.6°109.9°
C16C17N3114.5°120.0°
C16C17O4119.2°120.0°
C17C16H16108.2°109.8°
C16C15C14103.8°103.0°
C15C16H16116.5°110.0°
C16C15H151111.4°110.7°
C16C15H152112.6°110.7°
N3C17O4126.3°120.0°
C17N3C18120.6°120.0°
C17N3H3119.7°120.0°
N3C18C19111.5°109.5°
N3C18B115.6°109.4°
C18N3H3119.7°120.0°
N3C18H18102.4°109.4°
C19C18B105.0°109.5°
C18C19C20111.1°109.5°
C19C18H18113.4°109.5°
C18C19H191108.9°109.5°
C18C19H192108.5°109.5°
C18BO6124.4°120.0°
C18BO8106.5°120.0°
BC18H18109.2°109.5°
C19C20O5105.0°109.4°
C20C19H191108.9°109.5°
C20C19H192108.6°109.5°
C19C20H201111.0°109.4°
C19C20H202112.0°109.4°
O5C20H201111.0°109.5°
O5C20H202111.9°109.5°
C20O5HA109.5°114.0°
O6BO8101.5°120.0°
BO6H6109.5°117.0°
C13C14C15100.1°101.5°
C13C14O7110.8°111.0°
C14C13H131112.2°110.4°
C14C13H132113.9°110.4°
C13C14H14115.7°111.0°
C15C14O7112.6°110.9°
C14C15H151111.4°110.8°
C14C15H152112.6°110.6°
C15C14H14114.0°111.1°
C14O7C21118.5°117.0°
O7C14H14103.9°110.9°
O7C21N4121.6°120.2°
O7C21C29120.7°120.1°
N4C21C29117.7°119.7°
C21N4C22122.5°122.7°
C21C29C24120.2°118.5°
C21C29C28121.1°122.1°
N4C22C23122.6°121.9°
N4C22H22118.7°119.0°
C22C23C24117.1°118.8°
C23C22H22118.7°119.1°
C22C23H23121.5°120.6°
C23C24C29120.0°118.3°
C23C24C25118.6°122.1°
C24C23H23121.5°120.6°
C29C24C25121.5°119.6°
C24C29C28118.7°119.4°
C24C25C26119.2°119.4°
C24C25H25120.4°120.3°
C29C28C27119.7°119.5°
C29C28H28120.2°120.2°
C25C26C27119.8°121.0°
C26C25H25120.4°120.3°
C25C26H26120.1°119.5°
C26C27C28121.1°121.1°
C27C26H26120.1°119.5°
C26C27H27119.4°119.4°
C27C28H28120.1°120.2°
C28C27H27119.5°119.5°
H81CC8H82C107.5°110.0°
H111C11H112107.0°110.8°
H91CC9H92C108.2°110.0°
H101C10H102107.0°110.6°
H11CC1H12C109.5°109.5°
H11CC1H13C109.5°109.4°
H12CC1H13C109.5°109.4°
H31CC3H32C109.5°109.5°
H31CC3H33C109.5°109.5°
H32CC3H33C109.5°109.4°
H41CC4H42C109.4°109.4°
H41CC4H43C109.5°109.5°
H42CC4H43C109.5°109.4°
H131C13H132103.6°110.4°
H151C15H152105.2°110.8°
H191C19H192110.8°109.4°
H201C20H202106.1°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O1C6O2N1179.4°179.7°
O1C6O2C714.3°0.0°
O1C6N1C51.0°0.0°
O1C6N1H1179.0°180.0°
C6O2C7C8174.5°150.0°
C6O2C7C1155.9°95.2°
O2C6N1C5178.4°179.7°
O2C6N1H11.6°0.3°
C6O2C7H763.8°27.5°
N1C6O2C7165.1°179.7°
C6N1C5H1180.0°180.0°
C6N1C5C2136.5°85.0°
C6N1C5C12102.7°155.0°
C6N1C5H520.6°35.0°
O2C7C8C11123.4°118.8°
O2C7C8H7116.7°122.5°
O2C7C11H7116.7°122.6°
O2C7C8C9145.9°142.3°
O2C7C11C10149.0°156.6°
O2C7C8H81C25.8°23.0°
O2C7C8H82C93.1°98.4°
O2C7C11H11191.0°85.0°
O2C7C11H11227.8°38.3°
C8C7C11H7121.9°118.7°
C7C8C9H81C120.0°119.2°
C7C8C9H82C121.0°119.3°
C7C8C9C109.0°0.1°
C8C7C11C1027.5°37.9°
C7C8H81CH82C121.0°121.4°
C8C7C11H111147.5°156.2°
C8C7C11H11293.7°80.4°
C7C8C9H91C129.0°119.3°
C7C8C9H92C111.7°119.4°
C11C7C8C922.4°23.5°
C7C11C10C922.0°37.9°
C7C11C10H111120.0°118.3°
C7C11C10H112121.2°118.3°
C11C7C8H81C97.6°95.7°
C11C7C8H82C143.4°142.9°
C7C11H111H112121.3°123.3°
C7C11C10H101142.0°156.6°
C7C11C10H10299.3°80.7°
C8C9C10H91C120.0°119.3°
C8C9C10H92C120.7°119.3°
C8C9C10C118.1°23.6°
C9C8C7H797.4°95.2°
C9C8H81CH82C121.0°121.5°
C8C9H91CH92C120.7°121.3°
C8C9C10H101128.1°142.3°
C8C9C10H102113.2°95.0°
C9C10C11H101120.0°118.7°
C9C10C11H102121.3°118.7°
C10C9C8H81C111.0°119.3°
C10C9C8H82C130.0°119.3°
C9C10C11H111142.0°156.2°
C9C10C11H11299.3°80.4°
C10C9H91CH92C120.7°121.4°
C9C10H101H102121.3°122.6°
C10C11C7H794.4°80.8°
C10C11H111H112121.3°123.3°
C11C10C9H91C111.9°95.7°
C11C10C9H92C128.8°142.9°
C11C10H101H102121.3°122.7°
N1C5C2C12117.7°120.0°
N1C5C2H5119.1°119.9°
N1C5C12H5119.4°120.0°
N1C5C2C1174.5°55.6°
N1C5C2C363.9°175.6°
N1C5C2C454.3°64.4°
N1C5C12O352.2°33.3°
N1C5C12N2128.5°146.8°
C2C5C12H5116.0°120.0°
C5C2C1C3123.2°120.0°
C5C2C1C4124.6°120.0°
C5C2C3C4123.0°120.0°
C2C5C12O372.5°86.7°
C2C5C12N2106.9°93.2°
C2C5N1H143.5°95.0°
C5C2C1H11C23.5°59.9°
C5C2C1H12C143.5°180.0°
C5C2C1H13C96.5°60.0°
C5C2C3H31C55.4°64.7°
C5C2C3H32C64.6°175.2°
C5C2C3H33C175.4°55.3°
C5C2C4H41C147.6°60.1°
C5C2C4H42C27.6°180.0°
C5C2C4H43C92.4°60.0°
C12C5C2C156.9°64.4°
C12C5C2C3178.4°55.6°
C12C5C2C463.4°175.6°
C5C12O3N2179.3°180.0°
C5C12N2C16179.5°175.8°
C5C12N2C131.3°4.6°
C12C5N1H177.3°25.0°
C1C2C3C4112.5°120.1°
C1C2C5H566.3°175.6°
C2C1H11CH12C120.0°120.1°
C2C1H11CH13C120.0°120.0°
C2C1H12CH13C120.0°120.0°
C1C2C3H31C69.1°175.3°
C1C2C3H32C170.9°55.2°
C1C2C3H33C50.9°64.7°
C1C2C4H41C88.1°59.9°
C1C2C4H42C151.9°60.0°
C1C2C4H43C31.9°180.0°
C3C2C5H555.2°64.4°
C3C2C1H11C99.7°60.0°
C3C2C1H12C20.3°60.0°
C3C2C1H13C140.3°180.0°
C2C3H31CH32C120.0°120.0°
C2C3H31CH33C120.0°120.0°
C2C3H32CH33C120.0°119.9°
C3C2C4H41C26.1°180.0°
C3C2C4H42C93.9°60.0°
C3C2C4H43C146.1°59.9°
C4C2C5H5173.4°55.5°
C4C2C1H11C148.1°180.0°
C4C2C1H12C91.9°60.0°
C4C2C1H13C28.1°60.0°
C4C2C3H31C178.4°55.2°
C4C2C3H32C58.4°64.9°
C4C2C3H33C61.6°175.2°
C2C4H41CH42C120.0°120.0°
C2C4H41CH43C120.0°120.1°
C2C4H42CH43C120.0°120.0°
O3C12N2C161.1°4.2°
O3C12N2C13179.3°175.4°
O3C12C5H5171.6°153.3°
C12N2C16C13178.4°179.7°
C12N2C16C1771.4°59.6°
C12N2C16C15174.7°179.0°
C12N2C13C14148.9°155.9°
N2C12C5H59.1°26.7°
C12N2C16H1649.4°61.4°
C12N2C13H13128.9°85.2°
C12N2C13H13288.3°37.1°
N2C16C17C15112.8°117.8°
N2C16C17H16121.7°121.0°
N2C16C15H16120.9°119.6°
N2C16C17N3149.6°180.0°
N2C16C17O430.7°0.0°
C16N2C13C1429.5°24.4°
N2C16C15C1423.9°22.0°
C16N2C13H131149.5°94.5°
C16N2C13H13293.3°143.2°
N2C16C15H15196.1°140.5°
N2C16C15H152146.0°96.2°
C13N2C16C17110.2°120.7°
C13N2C16C153.7°1.3°
N2C13C14H131120.0°118.8°
N2C13C14H132122.8°118.8°
N2C13C14C1542.4°37.1°
N2C13C14O776.7°155.1°
C13N2C16H16129.1°118.3°
N2C13H131H132123.2°122.2°
N2C13C14H14165.4°81.1°
C17C16C15H16120.1°121.0°
C16C17N3O4179.8°180.0°
C16C17N3C18179.5°180.0°
C17C16C15C14142.8°97.4°
C17C16C15H15122.8°21.1°
C17C16C15H15295.1°144.4°
C16C17N3H30.5°0.1°
C15C16C17N397.6°62.2°
C15C16C17O482.1°117.8°
C16C15C14C1341.0°35.5°
C16C15C14H151120.0°118.4°
C16C15C14H152122.1°118.3°
C16C15C14O776.8°153.5°
C16C15H151H152122.3°123.3°
C16C15C14H14165.2°82.6°
C17N3C18H3180.0°179.9°
C17N3C18C19107.1°135.0°
C17N3C18B133.1°105.0°
N3C17C16H1627.9°59.0°
C17N3C18H1814.5°15.0°
O4C17N3C180.7°0.1°
O4C17C16H16152.4°121.1°
O4C17N3H3179.3°180.0°
N3C18C19B125.9°120.0°
N3C18C19H18115.0°120.0°
N3C18BH18114.7°119.9°
N3C18C19C2046.7°180.0°
N3C18BO661.0°60.0°
N3C18BO8178.1°120.0°
N3C18C19H19173.3°60.0°
N3C18C19H192166.0°60.0°
C19C18BH18121.9°120.0°
C18C19C20H191120.0°120.0°
C18C19C20H192119.3°120.0°
C18C19C20O5103.3°180.0°
C19C18BO6175.7°60.0°
C19C18BO858.6°119.9°
C19C18N3H372.9°44.9°
C18C19H191H192119.3°120.0°
C18C19C20H20116.7°60.0°
C18C19C20H202135.0°60.0°
BC18C19C20172.6°60.0°
C18BO6O8119.4°179.9°
BC18N3H346.9°75.1°
BC18C19H19152.6°180.0°
BC18C19H19268.1°60.0°
C18BO6H668.4°180.0°
C19C20O5H201120.0°119.9°
C19C20O5H202121.7°120.0°
C20C19C18H1868.2°60.0°
C20C19H191H192119.3°120.0°
C19C20H201H202121.8°120.0°
C19C20O5HA27.3°180.0°
O5C20C19H191136.7°60.0°
O5C20C19H19216.0°60.0°
O5C20H201H202121.8°120.1°
O6BC18H1853.7°180.0°
O8BC18H1863.3°0.1°
O8BO6H6172.2°0.0°
C13C14C15O7117.8°118.0°
C13C14C15H14124.2°118.1°
C13C14O7H14124.9°123.9°
C13C14O7C21168.5°91.4°
C14C13H131H132123.2°122.4°
C13C14C15H15179.0°153.9°
C13C14C15H152163.1°82.9°
C15C14O7H14123.9°124.0°
C15C14O7C2180.3°156.5°
C14C15C16H1697.0°141.6°
C15C14C13H131162.4°81.7°
C15C14C13H13280.4°155.9°
C14C15H151H152122.3°123.1°
C14O7C21N47.7°0.1°
C14O7C21C29173.7°179.7°
O7C14C13H13143.3°36.3°
O7C14C13H132160.5°86.1°
O7C14C15H151163.2°88.1°
O7C14C15H15245.3°35.2°
O7C21N4C29178.6°179.6°
O7C21N4C22178.1°179.9°
O7C21C29C24178.1°179.8°
O7C21C29C281.6°0.1°
C21O7C14H1443.6°32.5°
C21N4C22C230.0°0.0°
N4C21C29C240.5°0.6°
N4C21C29C28179.8°179.8°
C21N4C22H22180.0°180.0°
C29C21N4C220.5°0.3°
C21C29C24C230.1°0.6°
C21C29C24C28179.7°179.7°
C21C29C24C25179.7°179.7°
C21C29C28C27179.5°179.2°
C21C29C28H280.5°0.1°
N4C22C23H22180.0°179.9°
N4C22C23C240.4°0.0°
N4C22C23H23179.6°179.9°
C22C23C24H23180.0°179.9°
C22C23C24C290.3°0.3°
C22C23C24C25179.9°180.0°
C23C24C29C25179.8°179.7°
C23C24C29C28179.8°179.7°
C23C24C25C26179.7°180.0°
C24C23C22H22179.6°179.9°
C23C24C25H250.3°0.1°
C29C24C25C260.2°0.3°
C24C29C28C270.2°0.5°
C29C24C23H23179.6°179.8°
C29C24C25H25179.8°179.8°
C24C29C28H28179.8°179.7°
C25C24C29C280.0°0.1°
C24C25C26H25180.0°179.9°
C24C25C26C270.1°0.0°
C25C24C23H230.2°0.1°
C24C25C26H26179.9°180.0°
C29C28C27C260.2°0.8°
C29C28C27H28180.0°179.2°
C29C28C27H27179.8°179.7°
C25C26C27H26180.0°180.0°
C25C26C27C280.1°0.6°
C25C26C27H27179.9°179.9°
C26C27C28H27180.0°179.5°
C27C26C25H25179.9°179.9°
C26C27C28H28179.8°180.0°
C28C27C26H26179.9°179.5°
H1N1C5H5159.3°145.0°
H7C7C8H81C142.6°145.5°
H7C7C8H82C23.6°24.1°
H7C7C11H11125.6°37.6°
H7C7C11H112144.4°161.0°
H81CC8C9H91C8.9°0.1°
H81CC8C9H92C128.3°121.4°
H82CC8C9H91C110.1°121.4°
H82CC8C9H92C9.3°0.1°
H111C11C10H10198.0°85.1°
H111C11C10H10220.7°37.6°
H112C11C10H10120.8°38.3°
H112C11C10H102139.5°161.0°
H91CC9C10H1018.1°23.0°
H91CC9C10H102126.8°145.6°
H92CC9C10H101111.3°98.4°
H92CC9C10H1027.5°24.2°
H11CC1H12CH13C120.0°119.9°
H31CC3H32CH33C120.0°120.0°
H41CC4H42CH43C120.0°120.0°
H16C16C15H151143.0°99.9°
H16C16C15H15225.1°23.4°
H131C13C14H1474.6°160.1°
H132C13C14H1442.6°37.7°
H151C15C14H1445.2°35.8°
H152C15C14H1472.7°159.0°
H3N3C18H18165.5°165.0°
H18C18C19H191171.8°60.0°
H18C18C19H19251.1°180.0°
H191C19C20H201103.3°180.0°
H191C19C20H20215.0°60.0°
H192C19C20H201136.0°60.0°
H192C19C20H202105.7°180.0°
H201C20O5HA92.7°60.1°
H202C20O5HA148.9°60.0°
H22C22C23H230.4°0.0°
H25C25C26H260.1°0.0°
H28C28C27H270.2°0.5°
H26C26C27H270.0°0.0°

225158

PDB entries from 2024-09-18

PDB statisticsPDBj update infoContact PDBjnumon