C7S

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O3'	C3'	sing	1.43Å	1.44Å
O2	C2	doub	1.22Å	1.24Å
C4'	C3'	sing	1.54Å	1.53Å
C4'	O4'	sing	1.44Å	1.44Å
C4'	C5'	sing	1.53Å	1.52Å
C1'	O4'	sing	1.44Å	1.40Å
C1'	C2'	sing	1.54Å	1.53Å
C1'	N1	sing	1.47Å	1.51Å
C3'	C2'	sing	1.54Å	1.55Å
C2	N1	sing	1.35Å	1.40Å
C2	N3	sing	1.33Å	1.35Å
C5'	O5'	sing	1.43Å	1.41Å
N1	C6	sing	1.36Å	1.37Å
N3	C4	doub	1.33Å	1.33Å
O5'	P	sing	1.61Å	1.60Å
C6	C5	doub	1.35Å	1.34Å
C4	N4	sing	1.38Å	1.34Å
C4	C5	sing	1.41Å	1.43Å
SP1	P	sing	2.12Å	1.96Å
P	OP2	doub	1.48Å	1.50Å
P	OP3	sing	1.61Å	1.60Å
C5'	H1	sing	1.09Å	1.10Å
C5'	H2	sing	1.09Å	1.10Å
C4'	H3	sing	1.09Å	1.10Å
C3'	H4	sing	1.09Å	1.10Å
O3'	H5	sing	0.97Å	0.95Å
C2'	H6	sing	1.09Å	1.10Å
C2'	H7	sing	1.09Å	1.10Å
C1'	H8	sing	1.09Å	1.10Å
N4	H9	sing	0.97Å	1.00Å
N4	H10	sing	0.97Å	1.00Å
C5	H11	sing	1.08Å	1.08Å
C6	H12	sing	1.08Å	1.08Å
SP1	HSP1	sing	1.35Å	1.30Å
OP3	HOP3	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O3'	C3'	C4'	109.3°	110.5°
O3'	C3'	C2'	111.9°	110.5°
O3'	C3'	H4	111.4°	110.5°
C3'	O3'	H5	109.5°	114.0°
O2	C2	N1	119.2°	119.4°
O2	C2	N3	121.8°	119.4°
C3'	C4'	O4'	105.8°	104.8°
C3'	C4'	C5'	116.0°	110.4°
C4'	C3'	C2'	104.2°	104.1°
C3'	C4'	H3	107.8°	110.4°
C4'	C3'	H4	110.0°	110.6°
O4'	C4'	C5'	110.1°	110.3°
C4'	O4'	C1'	107.5°	105.2°
O4'	C4'	H3	109.1°	110.4°
C4'	C5'	O5'	111.5°	109.5°
C4'	C5'	H1	109.0°	109.4°
C4'	C5'	H2	108.9°	109.4°
C5'	C4'	H3	107.9°	110.4°
O4'	C1'	C2'	105.1°	104.8°
O4'	C1'	N1	108.8°	110.4°
O4'	C1'	H8	110.5°	110.4°
C2'	C1'	N1	114.6°	110.4°
C1'	C2'	C3'	103.2°	104.1°
C1'	C2'	H6	111.0°	110.5°
C1'	C2'	H7	111.0°	110.7°
C2'	C1'	H8	108.8°	110.4°
C1'	N1	C2	119.7°	119.9°
C1'	N1	C6	120.0°	119.8°
N1	C1'	H8	109.0°	110.4°
C2'	C3'	H4	109.8°	110.5°
C3'	C2'	H6	111.0°	110.5°
C3'	C2'	H7	111.0°	110.5°
N1	C2	N3	119.1°	121.1°
C2	N1	C6	120.3°	120.3°
C2	N3	C4	120.3°	120.7°
C5'	O5'	P	119.2°	123.0°
O5'	C5'	H1	108.9°	109.5°
O5'	C5'	H2	109.0°	109.5°
N1	C6	C5	121.0°	119.3°
N1	C6	H12	119.5°	120.3°
N3	C4	N4	117.9°	120.2°
N3	C4	C5	121.7°	119.6°
O5'	P	SP1	107.5°	109.5°
O5'	P	OP2	106.2°	109.5°
O5'	P	OP3	104.0°	109.4°
C6	C5	C4	117.6°	118.9°
C6	C5	H11	121.2°	120.6°
C5	C6	H12	119.5°	120.3°
N4	C4	C5	120.4°	120.2°
C4	N4	H9	120.0°	120.0°
C4	N4	H10	120.0°	120.0°
C4	C5	H11	121.2°	120.5°
SP1	P	OP2	124.0°	109.5°
SP1	P	OP3	106.2°	109.5°
P	SP1	HSP1	102.0°	103.0°
OP2	P	OP3	107.3°	109.5°
P	OP3	HOP3	109.5°	114.0°
H1	C5'	H2	109.5°	109.5°
H6	C2'	H7	109.5°	110.4°
H9	N4	H10	120.0°	120.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O3'	C3'	C4'	C2'	119.8°	118.7°
O3'	C3'	C4'	H4	122.6°	122.7°
O3'	C3'	C4'	O4'	131.7°	142.6°
O3'	C3'	C4'	C5'	106.0°	98.5°
O3'	C3'	C2'	C1'	107.7°	118.7°
O3'	C3'	C2'	H4	124.2°	122.6°
O3'	C3'	C4'	H3	15.1°	23.8°
O3'	C3'	C2'	H6	11.3°	122.6°
O3'	C3'	C2'	H7	133.3°	0.2°
O2	C2	N1	C1'	0.6°	0.0°
O2	C2	N1	N3	180.0°	180.0°
O2	C2	N1	C6	179.7°	179.8°
O2	C2	N3	C4	180.0°	180.0°
C3'	C4'	O4'	C5'	126.0°	118.9°
C3'	C4'	O4'	H3	115.7°	118.8°
C3'	C4'	C5'	H3	121.0°	122.3°
C3'	C4'	O4'	C1'	32.3°	40.5°
C4'	C3'	C2'	C1'	10.3°	0.0°
C4'	C3'	C2'	H4	117.8°	118.7°
C3'	C4'	C5'	O5'	23.4°	175.0°
C3'	C4'	C5'	H1	143.8°	65.0°
C3'	C4'	C5'	H2	96.9°	55.0°
C4'	C3'	O3'	H5	180.0°	180.0°
C4'	C3'	C2'	H6	129.3°	118.7°
C4'	C3'	C2'	H7	108.7°	118.8°
O4'	C4'	C5'	H3	118.9°	122.3°
C4'	O4'	C1'	C2'	39.3°	40.5°
C4'	O4'	C1'	N1	162.5°	159.3°
O4'	C4'	C3'	C2'	11.9°	24.0°
O4'	C4'	C5'	O5'	96.6°	69.6°
O4'	C4'	C5'	H1	23.7°	50.4°
O4'	C4'	C5'	H2	143.1°	170.4°
O4'	C4'	C3'	H4	105.7°	94.7°
C4'	O4'	C1'	H8	77.9°	78.4°
C5'	C4'	O4'	C1'	158.3°	159.3°
C5'	C4'	C3'	C2'	134.2°	142.8°
C4'	C5'	O5'	H1	120.3°	120.0°
C4'	C5'	O5'	H2	120.3°	120.0°
C4'	C5'	O5'	P	138.6°	180.0°
C4'	C5'	H1	H2	119.0°	119.9°
C5'	C4'	C3'	H4	16.6°	24.2°
O4'	C1'	C2'	N1	119.4°	118.8°
O4'	C1'	C2'	H8	118.4°	118.9°
O4'	C1'	N1	H8	120.6°	122.3°
O4'	C1'	C2'	C3'	29.8°	24.0°
O4'	C1'	N1	C2	112.5°	53.8°
O4'	C1'	N1	C6	66.6°	126.4°
C1'	O4'	C4'	H3	83.5°	78.3°
O4'	C1'	C2'	H6	148.8°	94.7°
O4'	C1'	C2'	H7	89.2°	142.7°
C2'	C1'	N1	H8	122.1°	122.3°
C1'	C2'	C3'	H6	119.0°	118.7°
C1'	C2'	C3'	H7	119.0°	118.8°
C2'	C1'	N1	C2	130.2°	61.6°
C2'	C1'	N1	C6	50.7°	118.2°
C1'	C2'	C3'	H4	128.1°	118.7°
C1'	C2'	H6	H7	122.9°	122.7°
N1	C1'	C2'	C3'	149.2°	142.8°
C1'	N1	C2	C6	179.1°	179.8°
C1'	N1	C2	N3	179.5°	180.0°
C1'	N1	C6	C5	179.6°	179.8°
N1	C1'	C2'	H6	91.8°	24.1°
N1	C1'	C2'	H7	30.2°	98.4°
C1'	N1	C6	H12	0.4°	0.1°
C2'	C3'	C4'	H3	104.7°	94.9°
C2'	C3'	O3'	H5	65.1°	65.3°
C3'	C2'	H6	H7	122.9°	122.6°
C3'	C2'	C1'	H8	88.6°	94.9°
N1	C2	N3	C4	0.1°	0.0°
C2	N1	C6	C5	0.5°	0.4°
C2	N1	C1'	H8	8.1°	176.2°
C2	N1	C6	H12	179.5°	179.7°
N3	C2	N1	C6	0.4°	0.2°
C2	N3	C4	N4	180.0°	180.0°
C2	N3	C4	C5	0.1°	0.0°
C5'	O5'	P	SP1	92.4°	65.0°
C5'	O5'	P	OP2	133.0°	55.0°
C5'	O5'	P	OP3	19.9°	175.0°
O5'	C5'	H1	H2	119.1°	120.0°
O5'	C5'	C4'	H3	144.5°	52.7°
N1	C6	C5	H12	180.0°	179.9°
N1	C6	C5	C4	0.3°	0.5°
C6	N1	C1'	H8	172.8°	4.1°
N1	C6	C5	H11	179.7°	179.8°
N3	C4	C5	C6	0.0°	0.2°
N3	C4	N4	C5	179.8°	180.0°
N3	C4	N4	H9	0.0°	0.0°
N3	C4	N4	H10	180.0°	180.0°
N3	C4	C5	H11	180.0°	180.0°
O5'	P	SP1	OP2	124.5°	120.0°
O5'	P	SP1	OP3	110.9°	120.0°
O5'	P	OP2	OP3	110.8°	120.0°
P	O5'	C5'	H1	18.2°	60.0°
P	O5'	C5'	H2	101.1°	60.0°
O5'	P	SP1	HSP1	180.0°	60.0°
O5'	P	OP3	HOP3	112.3°	180.0°
C6	C5	C4	N4	179.9°	179.7°
C6	C5	C4	H11	180.0°	179.8°
C4	N4	H9	H10	180.0°	180.0°
N4	C4	C5	H11	0.1°	0.0°
C5	C4	N4	H9	179.8°	180.0°
C5	C4	N4	H10	0.2°	0.0°
C4	C5	C6	H12	179.7°	179.7°
SP1	P	OP2	OP3	124.2°	120.0°
SP1	P	OP3	HOP3	134.4°	60.0°
OP2	P	SP1	HSP1	55.5°	180.0°
OP2	P	OP3	HOP3	0.0°	60.1°
OP3	P	SP1	HSP1	69.2°	60.0°
H1	C5'	C4'	H3	95.2°	172.7°
H2	C5'	C4'	H3	24.2°	67.3°
H3	C4'	C3'	H4	137.7°	146.5°
H4	C3'	O3'	H5	58.2°	57.3°
H4	C3'	C2'	H6	112.9°	0.0°
H4	C3'	C2'	H7	9.1°	122.5°
H6	C2'	C1'	H8	30.4°	146.4°
H7	C2'	C1'	H8	152.4°	23.9°
H11	C5	C6	H12	0.3°	0.1°

Release date:	2016-06-22
Definition date:	2016-04-28
Last modified:	2021-03-01
Release status:	REL
Processing site:	RCSB
Derived from:	5JLX