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SummaryGeometryRelated PDB entries

C6M

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
OANPALdoub1.48Å1.56Å
CADCAEdoub1.39Å1.37ÅAromatic
CADCACsing1.39Å1.36ÅAromatic
CAECAFsing1.38Å1.38ÅAromatic
PALOAMsing1.61Å1.50Å
PALOAOsing1.61Å1.56Å
PALCAKsing1.82Å1.84Å
OASPAPdoub1.48Å1.56Å
CACCABdoub1.38Å1.37ÅAromatic
CAFCAJsing1.51Å1.42Å
CAFNAAdoub1.32Å1.36ÅAromatic
CAJCAKsing1.53Å1.59Å
CAKPAPsing1.82Å1.81Å
CABNAAsing1.32Å1.37ÅAromatic
PAPOARsing1.61Å1.58Å
PAPOAQsing1.61Å1.54Å
NAACAGsing1.46Å1.44Å
CAGCAHsing1.53Å1.49Å
CAHCAIsing1.53Å1.58Å
OAOH1sing0.97Å0.95Å
OAMH2sing0.97Å0.95Å
CAKH3sing1.09Å1.10Å
OARH4sing0.97Å0.95Å
OAQH5sing0.97Å0.95Å
CAJH6sing1.09Å1.10Å
CAJH7sing1.09Å1.10Å
CAEH8sing1.08Å1.08Å
CADH9sing1.08Å1.08Å
CACH10sing1.08Å1.08Å
CABH11sing1.08Å1.08Å
CAGH12sing1.09Å1.10Å
CAGH13sing1.09Å1.10Å
CAHH14sing1.09Å1.10Å
CAHH15sing1.09Å1.10Å
CAIH16sing1.09Å1.10Å
CAIH17sing1.09Å1.10Å
CAIH18sing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
OANPALOAM121.4°109.5°
OANPALOAO104.4°109.5°
OANPALCAK108.2°109.5°
CAECADCAC120.1°118.4°
CADCAECAF123.3°119.2°
CADCAEH8118.4°120.5°
CAECADH9119.9°120.8°
CADCACCAB118.0°119.2°
CACCADH9119.9°120.8°
CADCACH10121.0°120.4°
CAECAFCAJ118.3°119.6°
CAECAFNAA114.9°120.8°
CAFCAEH8118.3°120.4°
OAMPALOAO111.5°109.4°
OAMPALCAK107.9°109.5°
PALOAMH2109.5°114.0°
OAOPALCAK101.5°109.5°
PALOAOH1109.5°114.0°
PALCAKCAJ116.4°109.5°
PALCAKPAP110.6°109.5°
PALCAKH3106.8°109.5°
OASPAPCAK117.0°109.4°
OASPAPOAR102.9°109.5°
OASPAPOAQ108.1°109.5°
CACCABNAA120.6°120.8°
CABCACH10121.0°120.5°
CACCABH11119.7°119.6°
CAJCAFNAA126.8°119.6°
CAFCAJCAK116.6°109.5°
CAFCAJH6107.7°109.5°
CAFCAJH7107.6°109.5°
CAFNAACAB123.0°121.7°
CAFNAACAG120.9°119.2°
CAJCAKPAP106.1°109.5°
CAJCAKH3109.5°109.4°
CAKCAJH6107.7°109.5°
CAKCAJH7107.7°109.4°
CAKPAPOAR111.4°109.4°
CAKPAPOAQ104.6°109.5°
PAPCAKH3107.1°109.5°
CABNAACAG116.0°119.1°
NAACABH11119.7°119.6°
OARPAPOAQ113.1°109.5°
PAPOARH4109.5°114.0°
PAPOAQH5109.5°114.0°
NAACAGCAH112.1°109.4°
NAACAGH12108.8°109.4°
NAACAGH13108.8°109.5°
CAGCAHCAI105.7°109.4°
CAHCAGH12108.8°109.5°
CAHCAGH13108.8°109.5°
CAGCAHH14110.4°109.4°
CAGCAHH15110.4°109.5°
CAICAHH14110.4°109.5°
CAICAHH15110.4°109.5°
CAHCAIH16109.5°109.5°
CAHCAIH17109.5°109.5°
CAHCAIH18109.5°109.4°
H6CAJH7109.5°109.5°
H12CAGH13109.5°109.5°
H14CAHH15109.5°109.5°
H16CAIH17109.5°109.5°
H16CAIH18109.5°109.5°
H17CAIH18109.5°109.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
OANPALOAMOAO123.7°120.0°
OANPALOAMCAK125.6°120.0°
OANPALOAOCAK112.4°120.0°
OANPALCAKCAJ66.5°76.0°
OANPALCAKPAP54.7°164.0°
OANPALOAOH10.0°180.0°
OANPALOAMH20.0°65.0°
OANPALCAKH3170.9°43.9°
CAECADCACH9180.0°180.0°
CADCAECAFH8180.0°180.0°
CAECADCACCAB3.8°0.1°
CADCAECAFCAJ179.4°180.0°
CADCAECAFNAA0.8°0.3°
CAECADCACH10176.2°180.0°
CACCADCAECAF1.9°0.0°
CADCACCABH10180.0°179.9°
CADCACCABNAA3.0°0.2°
CACCADCAEH8178.1°180.0°
CADCACCABH11177.0°180.0°
CAECAFCAJNAA178.4°179.7°
CAECAFCAJCAK121.7°87.9°
CAECAFNAACAB1.7°0.6°
CAECAFNAACAG178.3°179.7°
CAECAFCAJH6117.2°152.1°
CAECAFCAJH70.7°32.0°
CAFCAECADH9178.1°180.0°
OAMPALOAOCAK114.7°120.0°
OAMPALCAKCAJ66.6°44.0°
OAMPALCAKPAP172.3°76.0°
OAMPALOAOH1132.9°60.1°
OAMPALCAKH356.1°163.9°
OAOPALCAKCAJ176.0°164.0°
OAOPALCAKPAP54.9°43.9°
OAOPALOAMH2123.7°55.0°
OAOPALCAKH361.3°76.1°
PALCAKPAPOAS50.6°60.0°
PALCAKCAJCAF46.3°64.2°
PALCAKCAJPAP123.5°120.0°
PALCAKCAJH3121.2°120.0°
PALCAKPAPH3116.0°120.0°
PALCAKPAPOAR67.4°60.0°
PALCAKPAPOAQ170.1°180.0°
CAKPALOAOH1112.4°59.9°
CAKPALOAMH2125.6°175.0°
PALCAKCAJH6167.3°175.8°
PALCAKCAJH774.8°55.8°
OASPAPCAKCAJ76.5°60.0°
OASPAPCAKOAR118.0°120.0°
OASPAPCAKOAQ119.5°120.0°
OASPAPOAROAQ116.4°120.1°
OASPAPCAKH3166.6°180.0°
OASPAPOARH40.0°60.0°
OASPAPOAQH50.0°180.0°
CACCABNAACAF0.2°0.6°
CACCABNAAH11180.0°179.8°
CACCABNAACAG176.6°179.8°
CABCACCADH9176.2°179.9°
CAFCAJCAKH6121.0°120.0°
CAFCAJCAKH7121.0°120.0°
CAFCAJCAKPAP169.7°175.8°
CAJCAFNAACAB179.9°179.7°
CAJCAFNAACAG3.2°0.0°
CAFCAJCAKH375.0°55.7°
CAFCAJH6H7116.8°120.0°
CAJCAFCAEH80.6°0.0°
NAACAFCAJCAK59.8°91.8°
CAFNAACABCAG176.8°179.7°
CAFNAACAGCAH111.4°81.2°
NAACAFCAJH661.2°28.2°
NAACAFCAJH7179.1°148.3°
NAACAFCAEH8179.2°179.7°
CAFNAACABH11179.8°179.7°
CAFNAACAGH129.0°158.9°
CAFNAACAGH13128.2°38.9°
CAJCAKPAPH3116.9°120.0°
CAJCAKPAPOAR165.5°180.0°
CAJCAKPAPOAQ43.0°60.0°
CAKCAJH6H7116.8°120.0°
CAKPAPOAROAQ117.5°120.0°
CAKPAPOARH4126.1°180.0°
CAKPAPOAQH5125.3°60.0°
PAPCAKCAJH669.2°55.7°
PAPCAKCAJH748.7°64.3°
CABNAACAGCAH71.7°98.5°
NAACABCACH10177.0°179.7°
CABNAACAGH12167.9°21.4°
CABNAACAGH1348.7°141.4°
OARPAPCAKH348.6°60.0°
OARPAPOAQH5113.3°60.0°
OAQPAPCAKH373.9°60.0°
OAQPAPOARH4116.4°60.1°
NAACAGCAHH12120.4°119.9°
NAACAGCAHH13120.4°120.0°
NAACAGCAHCAI167.8°174.9°
CAGNAACABH113.4°0.0°
NAACAGH12H13118.8°120.0°
NAACAGCAHH1472.8°54.9°
NAACAGCAHH1548.4°65.1°
CAGCAHCAIH14119.4°119.9°
CAGCAHCAIH15119.4°120.0°
CAHCAGH12H13118.8°120.1°
CAGCAHH14H15121.7°120.0°
CAGCAHCAIH16180.0°55.2°
CAGCAHCAIH1760.0°64.8°
CAGCAHCAIH1860.0°175.2°
CAICAHCAGH1247.5°65.2°
CAICAHCAGH1371.8°54.9°
CAICAHH14H15121.8°120.1°
CAHCAIH16H17120.0°120.0°
CAHCAIH16H18120.0°120.0°
CAHCAIH17H18120.0°119.9°
H3CAKCAJH646.1°64.3°
H3CAKCAJH7164.0°175.7°
H8CAECADH91.9°0.0°
H9CADCACH103.8°0.0°
H10CACCABH113.0°0.0°
H12CAGCAHH14166.9°174.8°
H12CAGCAHH1572.0°54.8°
H13CAGCAHH1447.6°65.1°
H13CAGCAHH15168.8°174.9°
H14CAHCAIH1660.6°175.2°
H14CAHCAIH17179.4°55.1°
H14CAHCAIH1859.4°64.8°
H15CAHCAIH1660.6°64.8°
H15CAHCAIH1759.4°175.2°
H15CAHCAIH18179.4°55.2°
H16CAIH17H18120.0°120.0°

246704

PDB entries from 2025-12-24

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