C6G

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
OP1	P	doub	1.48Å	1.56Å
P	OP2	sing	1.61Å	1.56Å
P	O5'	sing	1.61Å	1.57Å
O	C	doub	1.21Å	1.28Å
C	O7	sing	1.34Å	1.24Å
C	CH3	sing	1.51Å	1.51Å
O5'	C5'	sing	1.43Å	1.39Å
C5'	C4'	sing	1.53Å	1.41Å
N7	C8	doub	1.30Å	1.35Å	Aromatic
N7	C5	sing	1.36Å	1.35Å	Aromatic
C8	N9	sing	1.36Å	1.34Å	Aromatic
O6	CH3	sing	1.43Å	1.39Å
O6	C6	sing	1.35Å	1.37Å
C2'	C3'	sing	1.55Å	1.46Å
C2'	C1'	sing	1.54Å	1.47Å
C5	C6	doub	1.40Å	1.40Å	Aromatic
C5	C4	sing	1.41Å	1.39Å	Aromatic
C6	N1	sing	1.33Å	1.33Å	Aromatic
N9	C4	sing	1.37Å	1.34Å	Aromatic
N9	C1'	sing	1.46Å	1.43Å
C3'	C4'	sing	1.55Å	1.47Å
C3'	O3'	sing	1.43Å	1.37Å
C4	N3	doub	1.33Å	1.33Å	Aromatic
C4'	O4'	sing	1.44Å	1.44Å
N1	C2	doub	1.33Å	1.33Å	Aromatic
C1'	O4'	sing	1.44Å	1.40Å
N3	C2	sing	1.32Å	1.33Å	Aromatic
C2	N2	sing	1.38Å	1.42Å
OP2	HOP2	sing	0.97Å	0.95Å
C5'	H5'	sing	1.09Å	1.10Å
C5'	H5''	sing	1.09Å	1.10Å
C4'	H4'	sing	1.09Å	1.10Å
C1'	H1'	sing	1.09Å	1.10Å
C8	H8	sing	1.08Å	1.08Å
N2	H21	sing	0.97Å	1.00Å
N2	H22	sing	0.97Å	1.00Å
C2'	H2'	sing	1.09Å	1.10Å
C2'	H2''	sing	1.09Å	1.10Å
C3'	H3'	sing	1.09Å	1.10Å
O3'	HO3'	sing	0.97Å	0.95Å
O7	HO7	sing	0.97Å	0.95Å
CH3	H31	sing	1.09Å	1.10Å
CH3	H32	sing	1.09Å	1.10Å
P	OP3	sing	1.61Å	34.55Å
OP3	HOP3	sing	0.97Å	0.00Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
OP1	P	OP2	113.0°	109.5°
OP1	P	O5'	107.2°	109.5°
OP1	P	OP3	140.4°	109.5°
OP2	P	O5'	115.4°	109.5°
P	OP2	HOP2	109.5°	114.0°
OP2	P	OP3	95.3°	109.5°
P	O5'	C5'	108.4°	123.0°
O5'	P	OP3	33.4°	109.4°
O	C	O7	116.1°	120.0°
O	C	CH3	119.2°	120.0°
O7	C	CH3	122.5°	120.0°
C	O7	HO7	109.5°	117.0°
C	CH3	O6	114.6°	109.5°
C	CH3	H31	108.2°	109.5°
C	CH3	H32	108.2°	109.5°
O5'	C5'	C4'	122.8°	109.5°
O5'	C5'	H5'	106.0°	109.5°
O5'	C5'	H5''	106.0°	109.5°
C5'	C4'	C3'	109.0°	110.6°
C5'	C4'	O4'	104.1°	110.6°
C4'	C5'	H5'	106.1°	109.5°
C4'	C5'	H5''	106.0°	109.4°
C5'	C4'	H4'	113.5°	110.6°
C8	N7	C5	108.3°	109.4°
N7	C8	N9	108.5°	110.0°
N7	C8	H8	125.8°	125.0°
N7	C5	C6	134.0°	134.6°
N7	C5	C4	106.9°	107.1°
C8	N9	C4	109.1°	107.4°
C8	N9	C1'	126.4°	126.3°
N9	C8	H8	125.7°	125.0°
CH3	O6	C6	117.9°	117.0°
O6	CH3	H31	108.2°	109.5°
O6	CH3	H32	108.2°	109.5°
O6	C6	C5	121.4°	120.7°
O6	C6	N1	119.1°	120.7°
C3'	C2'	C1'	101.3°	104.2°
C2'	C3'	C4'	105.3°	102.1°
C2'	C3'	O3'	107.9°	110.9°
C3'	C2'	H2'	111.5°	110.5°
C3'	C2'	H2''	111.5°	110.4°
C2'	C3'	H3'	111.1°	111.0°
C2'	C1'	N9	118.5°	110.0°
C2'	C1'	O4'	109.2°	107.3°
C2'	C1'	H1'	106.9°	109.9°
C1'	C2'	H2'	111.5°	110.6°
C1'	C2'	H2''	111.5°	110.5°
C6	C5	C4	119.2°	118.3°
C5	C6	N1	119.5°	118.6°
C5	C4	N9	107.2°	106.0°
C5	C4	N3	118.9°	119.2°
C6	N1	C2	119.0°	121.2°
C4	N9	C1'	123.8°	126.3°
N9	C4	N3	133.9°	134.8°
N9	C1'	O4'	106.7°	109.9°
N9	C1'	H1'	107.4°	109.9°
C4'	C3'	O3'	108.6°	110.9°
C3'	C4'	O4'	103.9°	103.5°
C3'	C4'	H4'	112.5°	110.8°
C4'	C3'	H3'	111.0°	110.9°
O3'	C3'	H3'	112.7°	110.8°
C3'	O3'	HO3'	109.5°	114.0°
C4	N3	C2	119.7°	120.6°
C4'	O4'	C1'	107.9°	107.0°
O4'	C4'	H4'	113.0°	110.6°
N1	C2	N3	123.8°	122.2°
N1	C2	N2	117.0°	118.9°
O4'	C1'	H1'	107.7°	109.9°
N3	C2	N2	119.3°	118.9°
C2	N2	H21	109.5°	120.0°
C2	N2	H22	109.5°	120.0°
H5'	C5'	H5''	109.5°	109.4°
H21	N2	H22	109.5°	120.0°
H2'	C2'	H2''	109.5°	110.5°
H31	CH3	H32	109.5°	109.5°
P	OP3	HOP3	90.0°	114.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
OP1	P	OP2	O5'	123.9°	120.0°
OP1	P	OP2	OP3	151.7°	120.0°
OP1	P	O5'	OP3	175.6°	120.0°
OP1	P	O5'	C5'	19.2°	55.1°
OP1	P	OP2	HOP2	0.0°	180.0°
OP1	P	OP3	HOP3	90.0°	60.1°
OP2	P	O5'	OP3	57.6°	120.0°
OP2	P	O5'	C5'	107.7°	64.9°
OP2	P	OP3	HOP3	90.0°	59.9°
P	O5'	C5'	C4'	162.1°	180.0°
O5'	P	OP2	HOP2	123.9°	60.0°
P	O5'	C5'	H5'	40.2°	59.9°
P	O5'	C5'	H5''	76.1°	60.0°
O5'	P	OP3	HOP3	90.0°	180.0°
O	C	O7	CH3	163.1°	180.0°
O	C	CH3	O6	106.8°	0.0°
O	C	O7	HO7	0.0°	0.0°
O	C	CH3	H31	132.5°	120.0°
O	C	CH3	H32	14.0°	120.0°
O7	C	CH3	O6	90.7°	180.0°
O7	C	CH3	H31	30.1°	60.0°
O7	C	CH3	H32	148.6°	60.0°
C	CH3	O6	H31	120.8°	120.0°
C	CH3	O6	H32	120.7°	120.0°
C	CH3	O6	C6	154.0°	180.0°
CH3	C	O7	HO7	163.1°	180.0°
C	CH3	H31	H32	117.7°	120.0°
O5'	C5'	C4'	H5'	121.8°	120.1°
O5'	C5'	C4'	H5''	121.8°	120.0°
O5'	C5'	C4'	C3'	126.5°	179.5°
O5'	C5'	C4'	O4'	123.1°	66.5°
O5'	C5'	H5'	H5''	114.0°	120.0°
O5'	C5'	C4'	H4'	0.2°	56.3°
C5'	O5'	P	OP3	165.3°	175.0°
C5'	C4'	C3'	C2'	77.6°	155.5°
C5'	C4'	C3'	O4'	110.5°	118.5°
C5'	C4'	C3'	H4'	126.9°	123.0°
C5'	C4'	C3'	O3'	167.1°	86.3°
C5'	C4'	O4'	H4'	123.6°	122.8°
C5'	C4'	O4'	C1'	96.1°	158.6°
C4'	C5'	H5'	H5''	114.0°	119.9°
C5'	C4'	C3'	H3'	42.7°	37.2°
N7	C8	N9	H8	180.0°	179.9°
C8	N7	C5	C6	179.7°	180.0°
C8	N7	C5	C4	0.0°	0.0°
N7	C8	N9	C4	1.7°	0.1°
N7	C8	N9	C1'	172.5°	179.7°
C5	N7	C8	N9	1.1°	0.1°
N7	C5	C6	O6	0.3°	0.0°
N7	C5	C6	C4	179.7°	180.0°
N7	C5	C6	N1	179.8°	179.9°
N7	C5	C4	N9	1.0°	0.0°
N7	C5	C4	N3	180.0°	179.8°
C5	N7	C8	H8	178.9°	180.0°
C8	N9	C1'	C2'	95.2°	94.1°
C8	N9	C4	C5	1.7°	0.1°
C8	N9	C4	C1'	171.1°	179.8°
C8	N9	C4	N3	179.6°	179.8°
C8	N9	C1'	O4'	28.4°	23.8°
C8	N9	C1'	H1'	143.7°	144.8°
CH3	O6	C6	C5	175.6°	180.0°
CH3	O6	C6	N1	3.9°	0.1°
O6	CH3	H31	H32	117.6°	120.0°
O6	C6	C5	N1	179.5°	179.9°
O6	C6	C5	C4	179.4°	180.0°
O6	C6	N1	C2	179.5°	179.7°
C6	O6	CH3	H31	85.3°	60.0°
C6	O6	CH3	H32	33.2°	60.0°
C3'	C2'	C1'	H2'	118.7°	118.7°
C3'	C2'	C1'	H2''	118.7°	118.6°
C3'	C2'	C1'	N9	145.9°	121.5°
C2'	C3'	C4'	O3'	115.3°	118.1°
C2'	C3'	C4'	H3'	120.3°	118.3°
C2'	C3'	O3'	H3'	123.0°	123.7°
C2'	C3'	C4'	O4'	32.9°	37.1°
C3'	C2'	C1'	O4'	23.5°	2.0°
C2'	C3'	C4'	H4'	155.6°	81.5°
C3'	C2'	C1'	H1'	92.8°	117.4°
C3'	C2'	H2'	H2''	123.8°	122.5°
C2'	C3'	O3'	HO3'	180.0°	61.5°
C2'	C1'	N9	C4	95.3°	85.7°
C2'	C1'	N9	O4'	123.6°	117.9°
C2'	C1'	N9	H1'	121.1°	121.1°
C1'	C2'	C3'	C4'	34.1°	20.9°
C1'	C2'	C3'	O3'	81.7°	139.1°
C2'	C1'	O4'	C4'	3.6°	26.5°
C2'	C1'	O4'	H1'	115.7°	119.4°
C1'	C2'	H2'	H2''	123.8°	122.7°
C1'	C2'	C3'	H3'	154.3°	97.3°
C6	C5	C4	N9	179.2°	180.0°
C6	C5	C4	N3	0.2°	0.2°
C5	C6	N1	C2	0.0°	0.4°
C4	C5	C6	N1	0.1°	0.1°
C5	C4	N9	N3	178.7°	179.7°
C5	C4	N9	C1'	172.8°	179.8°
C5	C4	N3	C2	0.3°	0.3°
C6	N1	C2	N3	0.1°	0.4°
C6	N1	C2	N2	178.9°	179.6°
C4	N9	C1'	O4'	141.1°	156.4°
N9	C4	N3	C2	178.9°	180.0°
C4	N9	C1'	H1'	25.8°	35.4°
C4	N9	C8	H8	178.2°	180.0°
C1'	N9	C4	N3	8.5°	0.0°
N9	C1'	O4'	C4'	132.8°	146.1°
N9	C1'	O4'	H1'	115.0°	121.0°
C1'	N9	C8	H8	7.4°	0.2°
N9	C1'	C2'	H2'	27.2°	119.8°
N9	C1'	C2'	H2''	95.5°	2.9°
C4'	C3'	O3'	H3'	123.3°	123.6°
C3'	C4'	O4'	H4'	122.3°	118.7°
C3'	C4'	O4'	C1'	17.9°	40.1°
C3'	C4'	C5'	H5'	111.7°	60.4°
C3'	C4'	C5'	H5''	4.6°	59.5°
C4'	C3'	C2'	H2'	84.5°	97.8°
C4'	C3'	C2'	H2''	152.8°	139.6°
C4'	C3'	O3'	HO3'	66.4°	174.2°
O3'	C3'	C4'	O4'	82.4°	155.2°
O3'	C3'	C4'	H4'	40.2°	36.6°
O3'	C3'	C2'	H2'	159.7°	20.3°
O3'	C3'	C2'	H2''	37.0°	102.3°
C4	N3	C2	N1	0.2°	0.0°
C4	N3	C2	N2	178.8°	180.0°
O4'	C4'	C5'	H5'	1.3°	53.6°
O4'	C4'	C5'	H5''	115.1°	173.5°
C4'	O4'	C1'	H1'	112.2°	92.9°
O4'	C4'	C3'	H3'	153.3°	81.2°
N1	C2	N3	N2	179.0°	180.0°
N1	C2	N2	H21	0.0°	180.0°
N1	C2	N2	H22	120.0°	0.1°
C1'	O4'	C4'	H4'	140.2°	78.6°
O4'	C1'	C2'	H2'	95.2°	120.7°
O4'	C1'	C2'	H2''	142.2°	116.6°
N3	C2	N2	H21	179.0°	0.1°
N3	C2	N2	H22	60.9°	180.0°
C2	N2	H21	H22	120.0°	179.9°
HOP2	OP2	P	OP3	151.7°	60.0°
H5'	C5'	C4'	H4'	122.0°	176.4°
H5''	C5'	C4'	H4'	121.6°	63.7°
H4'	C4'	C3'	H3'	84.1°	160.2°
H1'	C1'	C2'	H2'	148.6°	1.3°
H1'	C1'	C2'	H2''	25.9°	124.0°
H2'	C2'	C3'	H3'	35.7°	144.0°
H2''	C2'	C3'	H3'	87.0°	21.4°
H3'	C3'	O3'	HO3'	57.0°	62.2°

Definition date:	2012-04-28
Last modified:	2012-06-15
Release status:	REL
Processing site:	RCSB
Derived from:	4ENN