C6B
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O1P | P | sing | 1.61Å | 1.67Å | |
| P | O2P | sing | 1.61Å | 1.68Å | |
| P | O3P | doub | 1.48Å | 1.52Å | |
| P | O3' | sing | 1.61Å | 1.67Å | |
| O3' | C3' | sing | 1.43Å | 1.43Å | |
| C3' | C2' | sing | 1.55Å | 1.53Å | |
| C3' | C4' | sing | 1.55Å | 1.58Å | |
| C2' | O2' | sing | 1.43Å | 1.44Å | |
| C2' | C1' | sing | 1.54Å | 1.53Å | |
| C4' | C5' | sing | 1.53Å | 1.55Å | |
| C4' | O4' | sing | 1.44Å | 1.47Å | |
| C5' | O5' | sing | 1.43Å | 1.44Å | |
| O4' | C1' | sing | 1.44Å | 1.48Å | |
| C1' | N1 | sing | 1.46Å | 1.48Å | |
| N1 | C6 | sing | 1.36Å | 1.40Å | |
| N1 | C2 | sing | 1.35Å | 1.40Å | |
| C6 | C5 | doub | 1.35Å | 1.38Å | |
| C5 | C4 | sing | 1.41Å | 1.38Å | |
| C4 | N4 | sing | 1.38Å | 1.33Å | |
| C4 | N3 | doub | 1.33Å | 1.36Å | |
| N3 | C2 | sing | 1.33Å | 1.35Å | |
| C2 | O2 | doub | 1.22Å | 1.24Å | |
| O1P | HO1P | sing | 0.97Å | 0.95Å | |
| O2P | HO2P | sing | 0.97Å | 0.95Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| O2' | HO2' | sing | 0.97Å | 0.95Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| C5' | H5' | sing | 1.09Å | 1.10Å | |
| C5' | H5'A | sing | 1.09Å | 1.10Å | |
| O5' | HO5' | sing | 0.97Å | 0.95Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| C6 | H6 | sing | 1.08Å | 1.08Å | |
| C5 | H5 | sing | 1.08Å | 1.08Å | |
| N4 | HN4 | sing | 0.97Å | 1.00Å | |
| N4 | HN4A | sing | 0.97Å | 1.00Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O1P | P | O2P | 105.8° | 109.5° |
| O1P | P | O3P | 113.4° | 109.5° |
| O1P | P | O3' | 104.8° | 109.4° |
| P | O1P | HO1P | 109.5° | 114.0° |
| O2P | P | O3P | 113.9° | 109.5° |
| O2P | P | O3' | 103.9° | 109.4° |
| P | O2P | HO2P | 109.5° | 114.0° |
| O3P | P | O3' | 114.0° | 109.5° |
| P | O3' | C3' | 114.7° | 123.0° |
| O3' | C3' | C2' | 112.6° | 110.9° |
| O3' | C3' | C4' | 117.1° | 110.9° |
| O3' | C3' | H3' | 100.4° | 110.8° |
| C2' | C3' | C4' | 105.3° | 102.1° |
| C3' | C2' | O2' | 113.2° | 110.5° |
| C3' | C2' | C1' | 88.9° | 104.2° |
| C2' | C3' | H3' | 113.3° | 110.9° |
| C3' | C2' | H2' | 121.6° | 110.5° |
| C3' | C4' | C5' | 119.5° | 110.6° |
| C3' | C4' | O4' | 102.0° | 103.5° |
| C4' | C3' | H3' | 108.3° | 110.9° |
| C3' | C4' | H4' | 107.0° | 110.6° |
| O2' | C2' | C1' | 114.3° | 110.5° |
| O2' | C2' | H2' | 99.4° | 110.5° |
| C2' | O2' | HO2' | 109.5° | 113.9° |
| C2' | C1' | O4' | 102.5° | 107.3° |
| C2' | C1' | N1 | 125.6° | 109.9° |
| C1' | C2' | H2' | 120.6° | 110.6° |
| C2' | C1' | H1' | 107.3° | 109.9° |
| C5' | C4' | O4' | 106.2° | 110.6° |
| C4' | C5' | O5' | 110.4° | 109.5° |
| C5' | C4' | H4' | 103.0° | 110.6° |
| C4' | C5' | H5' | 109.2° | 109.5° |
| C4' | C5' | H5'A | 109.0° | 109.5° |
| C4' | O4' | C1' | 101.2° | 107.0° |
| O4' | C4' | H4' | 120.2° | 110.7° |
| O5' | C5' | H5' | 109.2° | 109.5° |
| O5' | C5' | H5'A | 109.0° | 109.5° |
| C5' | O5' | HO5' | 109.5° | 114.0° |
| O4' | C1' | N1 | 118.2° | 109.9° |
| O4' | C1' | H1' | 117.4° | 109.8° |
| C1' | N1 | C6 | 114.7° | 119.8° |
| C1' | N1 | C2 | 124.3° | 119.9° |
| N1 | C1' | H1' | 85.4° | 109.9° |
| C6 | N1 | C2 | 121.0° | 120.3° |
| N1 | C6 | C5 | 119.5° | 119.3° |
| N1 | C6 | H6 | 120.2° | 120.4° |
| N1 | C2 | N3 | 117.1° | 121.1° |
| N1 | C2 | O2 | 121.1° | 119.4° |
| C6 | C5 | C4 | 118.5° | 119.0° |
| C5 | C6 | H6 | 120.2° | 120.3° |
| C6 | C5 | H5 | 120.8° | 120.5° |
| C5 | C4 | N4 | 117.2° | 120.2° |
| C5 | C4 | N3 | 120.9° | 119.6° |
| C4 | C5 | H5 | 120.8° | 120.5° |
| N4 | C4 | N3 | 121.9° | 120.2° |
| C4 | N4 | HN4 | 109.5° | 120.0° |
| C4 | N4 | HN4A | 125.3° | 119.9° |
| C4 | N3 | C2 | 123.0° | 120.7° |
| N3 | C2 | O2 | 121.8° | 119.5° |
| H5' | C5' | H5'A | 110.2° | 109.4° |
| HN4 | N4 | HN4A | 125.2° | 120.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O1P | P | O2P | O3P | 125.3° | 120.0° |
| O1P | P | O2P | O3' | 110.1° | 120.0° |
| O1P | P | O3P | O3' | 119.8° | 120.0° |
| O1P | P | O3' | C3' | 72.0° | 65.0° |
| O1P | P | O2P | HO2P | 80.1° | 60.0° |
| O2P | P | O3P | O3' | 119.0° | 120.0° |
| O2P | P | O3' | C3' | 177.2° | 175.0° |
| O2P | P | O1P | HO1P | 122.8° | 59.9° |
| O3P | P | O3' | C3' | 52.6° | 55.0° |
| O3P | P | O1P | HO1P | 2.7° | 180.0° |
| O3P | P | O2P | HO2P | 154.7° | 60.0° |
| P | O3' | C3' | C2' | 117.5° | 120.0° |
| P | O3' | C3' | C4' | 120.2° | 127.3° |
| O3' | P | O1P | HO1P | 127.7° | 60.0° |
| O3' | P | O2P | HO2P | 30.0° | 180.0° |
| P | O3' | C3' | H3' | 3.2° | 3.6° |
| O3' | C3' | C2' | C4' | 128.7° | 118.2° |
| O3' | C3' | C2' | H3' | 113.1° | 123.6° |
| O3' | C3' | C4' | H3' | 112.5° | 123.6° |
| O3' | C3' | C2' | O2' | 60.1° | 21.4° |
| O3' | C3' | C2' | C1' | 176.2° | 97.3° |
| O3' | C3' | C4' | C5' | 29.5° | 37.4° |
| O3' | C3' | C4' | O4' | 146.1° | 81.1° |
| O3' | C3' | C2' | H2' | 58.0° | 143.9° |
| O3' | C3' | C4' | H4' | 86.8° | 160.2° |
| C2' | C3' | C4' | H3' | 121.5° | 118.2° |
| C3' | C2' | O2' | C1' | 99.8° | 114.7° |
| C3' | C2' | O2' | H2' | 130.4° | 122.5° |
| C3' | C2' | C1' | H2' | 126.7° | 118.7° |
| C2' | C3' | C4' | C5' | 96.5° | 155.5° |
| C2' | C3' | C4' | O4' | 20.1° | 37.0° |
| C3' | C2' | C1' | O4' | 61.4° | 2.0° |
| C3' | C2' | C1' | N1 | 159.7° | 121.5° |
| C3' | C2' | O2' | HO2' | 17.9° | 173.6° |
| C2' | C3' | C4' | H4' | 147.2° | 81.6° |
| C3' | C2' | C1' | H1' | 62.8° | 117.4° |
| C4' | C3' | C2' | O2' | 68.6° | 139.5° |
| C4' | C3' | C2' | C1' | 47.5° | 20.9° |
| C3' | C4' | C5' | O4' | 114.4° | 114.1° |
| C3' | C4' | C5' | H4' | 118.4° | 122.9° |
| C3' | C4' | O4' | H4' | 118.1° | 118.5° |
| C3' | C4' | C5' | O5' | 133.6° | 175.0° |
| C3' | C4' | O4' | C1' | 18.7° | 40.0° |
| C4' | C3' | C2' | H2' | 173.3° | 98.0° |
| C3' | C4' | C5' | H5' | 106.4° | 65.0° |
| C3' | C4' | C5' | H5'A | 14.0° | 55.0° |
| O2' | C2' | C1' | H2' | 118.3° | 122.7° |
| O2' | C2' | C1' | O4' | 53.6° | 116.6° |
| O2' | C2' | C1' | N1 | 85.2° | 2.9° |
| O2' | C2' | C3' | H3' | 173.2° | 102.2° |
| O2' | C2' | C1' | H1' | 177.9° | 124.0° |
| C2' | C1' | O4' | C4' | 53.3° | 26.5° |
| C2' | C1' | O4' | N1 | 142.7° | 119.5° |
| C2' | C1' | O4' | H1' | 117.3° | 119.5° |
| C2' | C1' | N1 | H1' | 108.1° | 121.1° |
| C2' | C1' | N1 | C6 | 91.4° | 94.4° |
| C2' | C1' | N1 | C2 | 90.9° | 85.8° |
| C1' | C2' | C3' | H3' | 70.7° | 139.1° |
| C1' | C2' | O2' | HO2' | 81.9° | 71.7° |
| C5' | C4' | O4' | H4' | 116.1° | 122.9° |
| C4' | C5' | O5' | H5' | 120.0° | 120.0° |
| C4' | C5' | O5' | H5'A | 119.6° | 120.0° |
| C5' | C4' | O4' | C1' | 144.6° | 158.6° |
| C5' | C4' | C3' | H3' | 142.0° | 86.3° |
| C4' | C5' | H5' | H5'A | 119.6° | 120.0° |
| C4' | C5' | O5' | HO5' | 9.0° | 179.9° |
| O4' | C4' | C5' | O5' | 112.0° | 70.9° |
| C4' | O4' | C1' | N1 | 164.1° | 146.0° |
| O4' | C4' | C3' | H3' | 101.4° | 155.2° |
| O4' | C4' | C5' | H5' | 8.0° | 49.1° |
| O4' | C4' | C5' | H5'A | 128.4° | 169.1° |
| C4' | O4' | C1' | H1' | 64.0° | 93.0° |
| O5' | C5' | C4' | H4' | 15.2° | 52.1° |
| O5' | C5' | H5' | H5'A | 119.6° | 120.0° |
| O4' | C1' | N1 | H1' | 118.7° | 121.0° |
| O4' | C1' | N1 | C6 | 135.3° | 23.5° |
| O4' | C1' | N1 | C2 | 42.3° | 156.3° |
| O4' | C1' | C2' | H2' | 171.9° | 120.7° |
| C1' | O4' | C4' | H4' | 99.3° | 78.5° |
| C1' | N1 | C6 | C2 | 177.7° | 179.8° |
| C1' | N1 | C6 | C5 | 178.8° | 180.0° |
| C1' | N1 | C2 | N3 | 178.6° | 179.7° |
| C1' | N1 | C2 | O2 | 1.9° | 0.0° |
| N1 | C1' | C2' | H2' | 33.1° | 119.8° |
| C1' | N1 | C6 | H6 | 1.2° | 0.1° |
| N1 | C6 | C5 | H6 | 180.0° | 180.0° |
| N1 | C6 | C5 | C4 | 0.6° | 0.1° |
| C6 | N1 | C2 | N3 | 1.0° | 0.5° |
| C6 | N1 | C2 | O2 | 179.5° | 179.7° |
| C6 | N1 | C1' | H1' | 16.6° | 144.5° |
| N1 | C6 | C5 | H5 | 179.3° | 180.0° |
| C2 | N1 | C6 | C5 | 1.0° | 0.2° |
| N1 | C2 | N3 | C4 | 0.7° | 0.5° |
| N1 | C2 | N3 | O2 | 179.5° | 179.7° |
| C2 | N1 | C1' | H1' | 161.0° | 35.3° |
| C2 | N1 | C6 | H6 | 178.9° | 179.7° |
| C6 | C5 | C4 | H5 | 180.0° | 179.9° |
| C6 | C5 | C4 | N4 | 179.7° | 180.0° |
| C6 | C5 | C4 | N3 | 0.3° | 0.1° |
| C5 | C4 | N4 | N3 | 179.9° | 179.9° |
| C5 | C4 | N3 | C2 | 0.4° | 0.2° |
| C4 | C5 | C6 | H6 | 179.3° | 180.0° |
| C5 | C4 | N4 | HN4 | 180.0° | 0.1° |
| C5 | C4 | N4 | HN4A | 0.0° | 179.9° |
| N4 | C4 | N3 | C2 | 179.7° | 179.7° |
| N4 | C4 | C5 | H5 | 0.3° | 0.1° |
| C4 | N4 | HN4 | HN4A | 180.0° | 180.0° |
| C4 | N3 | C2 | O2 | 179.8° | 179.7° |
| N3 | C4 | C5 | H5 | 179.7° | 180.0° |
| N3 | C4 | N4 | HN4 | 0.1° | 179.9° |
| N3 | C4 | N4 | HN4A | 179.9° | 0.1° |
| H3' | C3' | C2' | H2' | 55.1° | 20.3° |
| H3' | C3' | C4' | H4' | 25.7° | 36.6° |
| H2' | C2' | O2' | HO2' | 148.3° | 51.1° |
| H2' | C2' | C1' | H1' | 63.8° | 1.3° |
| H4' | C4' | C5' | H5' | 135.2° | 172.2° |
| H4' | C4' | C5' | H5'A | 104.5° | 67.9° |
| H5' | C5' | O5' | HO5' | 129.0° | 60.1° |
| H5'A | C5' | O5' | HO5' | 110.6° | 59.9° |
| H6 | C6 | C5 | H5 | 0.7° | 0.1° |
