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C5Y

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
N32C31doub1.32Å1.44ÅAromatic
N32C02sing1.33Å1.43ÅAromatic
C31N30sing1.32Å1.46ÅAromatic
N01C02sing1.38Å1.45Å
C02C03doub1.41Å1.54ÅAromatic
N30C04doub1.33Å1.50ÅAromatic
C03C04sing1.40Å1.37ÅAromatic
C03N29sing1.35Å1.33ÅAromatic
C04N05sing1.37Å1.34ÅAromatic
O27C26sing1.43Å1.36Å
C26C24sing1.55Å1.53Å
C26C06sing1.55Å1.55Å
O25C24sing1.43Å1.51Å
N29C28doub1.30Å1.35ÅAromatic
C24C08sing1.54Å1.29Å
N05C06sing1.47Å1.50Å
N05C28sing1.36Å1.35ÅAromatic
C06O07sing1.44Å1.29Å
C08O07sing1.44Å1.63Å
C08C09sing1.53Å1.53Å
C20C21sing1.53Å1.53Å
C20C19sing1.53Å1.53Å
C09O10sing1.43Å1.41Å
C18C19sing1.53Å1.53Å
C18C17sing1.53Å1.53Å
C17C16sing1.53Å1.52Å
O10P11sing1.61Å1.65Å
C15C16sing1.53Å1.52Å
C15C14sing1.51Å1.52Å
O22C14doub1.21Å1.19Å
C14O13sing1.34Å1.40Å
O12P11doub1.48Å1.51Å
P11O13sing1.61Å1.64Å
P11O23sing1.61Å1.51Å
C15H151sing1.09Å1.10Å
C15H152sing1.09Å1.10Å
C17H172sing1.09Å1.10Å
C17H171sing1.09Å1.10Å
C20H201sing1.09Å1.10Å
C20H202sing1.09Å1.10Å
C21H212sing1.09Å1.10Å
C21H213sing1.09Å1.10Å
C21H211sing1.09Å1.10Å
C24H241sing1.09Å1.10Å
C26H261sing1.09Å1.10Å
C28H281sing1.08Å1.08Å
C06H061sing1.09Å1.10Å
C08H081sing1.09Å1.10Å
C09H091sing1.09Å1.10Å
C09H092sing1.09Å1.10Å
C16H162sing1.09Å1.10Å
C16H161sing1.09Å1.10Å
C18H182sing1.09Å1.10Å
C18H181sing1.09Å1.10Å
C19H192sing1.09Å1.10Å
C19H191sing1.09Å1.10Å
C31H311sing1.08Å1.08Å
N01H012sing0.97Å1.00Å
N01H011sing0.97Å1.00Å
O23H1sing0.97Å0.95Å
O25H251sing0.97Å0.95Å
O27H271sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C31N32C02119.9°121.2°
N32C31N30120.0°122.5°
N32C31H311120.0°118.8°
N32C02N01119.3°120.8°
N32C02C03119.8°118.5°
C31N30C04120.3°120.7°
N30C31H311120.0°118.8°
N01C02C03120.9°120.7°
C02N01H012109.5°120.0°
C02N01H011109.5°120.0°
C02C03C04120.4°118.1°
C02C03N29132.4°134.7°
N30C04C03119.7°119.1°
N30C04N05132.0°135.0°
C04C03N29107.2°107.2°
C03C04N05108.3°106.0°
C03N29C28108.8°109.4°
C04N05C06125.5°126.2°
C04N05C28107.8°107.5°
O27C26C24109.4°110.9°
O27C26C06111.2°110.9°
O27C26H261112.4°110.8°
C26O27H271109.5°114.0°
C24C26C06104.1°102.1°
C26C24O25109.3°110.6°
C26C24C08103.2°104.2°
C26C24H241110.2°110.5°
C24C26H261109.9°110.9°
C26C06N05109.6°110.6°
C26C06O07104.3°103.5°
C06C26H261109.5°110.9°
C26C06H061107.9°110.7°
O25C24C08109.3°110.5°
O25C24H241110.5°110.5°
C24O25H251109.5°114.0°
N29C28N05107.9°110.0°
N29C28H281126.1°125.0°
C24C08O07104.9°107.3°
C24C08C09115.1°109.9°
C08C24H241114.0°110.5°
C24C08H081112.4°109.8°
C06N05C28126.7°126.3°
N05C06O07114.2°110.6°
N05C06H061108.7°110.7°
N05C28H281126.1°125.1°
C06O07C08109.4°107.0°
O07C06H061111.8°110.6°
O07C08C09107.7°109.9°
O07C08H081107.5°109.9°
C08C09O10107.6°109.5°
C09C08H081108.8°110.0°
C08C09H091109.9°109.5°
C08C09H092109.9°109.5°
C21C20C19109.1°109.4°
C21C20H201109.6°109.4°
C21C20H202109.5°109.5°
C20C21H212109.5°109.5°
C20C21H213109.5°109.5°
C20C21H211109.5°109.5°
C20C19C18110.1°109.4°
C19C20H201109.5°109.5°
C19C20H202109.6°109.5°
C20C19H192109.3°109.5°
C20C19H191109.3°109.5°
C09O10P11120.5°123.0°
O10C09H091109.9°109.5°
O10C09H092109.9°109.5°
C19C18C17108.3°109.4°
C19C18H182109.8°109.5°
C19C18H181109.8°109.4°
C18C19H192109.3°109.5°
C18C19H191109.3°109.5°
C18C17C16110.2°109.4°
C18C17H172109.3°109.5°
C18C17H171109.3°109.5°
C17C18H182109.7°109.5°
C17C18H181109.8°109.5°
C17C16C15108.3°109.5°
C16C17H172109.3°109.5°
C16C17H171109.3°109.4°
C17C16H162109.7°109.5°
C17C16H161109.8°109.5°
O10P11O12109.9°109.4°
O10P11O13108.5°109.5°
O10P11O23110.4°109.5°
C16C15C14109.7°109.5°
C16C15H151109.4°109.5°
C16C15H152109.4°109.5°
C15C16H162109.7°109.4°
C15C16H161109.8°109.5°
C15C14O22120.4°120.0°
C15C14O13119.3°120.0°
C14C15H151109.4°109.4°
C14C15H152109.4°109.5°
O22C14O13120.2°120.0°
C14O13P11117.0°117.0°
O12P11O13109.1°109.5°
O12P11O23109.8°109.5°
O13P11O23109.1°109.5°
P11O23H1109.5°114.0°
H151C15H152109.5°109.5°
H172C17H171109.5°109.5°
H201C20H202109.5°109.5°
H212C21H213109.5°109.5°
H212C21H211109.4°109.4°
H213C21H211109.5°109.5°
H091C09H092109.5°109.4°
H162C16H161109.5°109.5°
H182C18H181109.4°109.5°
H192C19H191109.5°109.5°
H012N01H011109.4°120.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
N32C31N30H311180.0°179.9°
C31N32C02N01179.9°180.0°
C31N32C02C030.0°0.0°
N32C31N30C040.0°0.0°
C02N32C31N300.0°0.0°
N32C02N01C03179.9°180.0°
N32C02C03C040.0°0.0°
N32C02C03N29180.0°180.0°
C02N32C31H311180.0°179.9°
N32C02N01H0120.0°180.0°
N32C02N01H011120.0°0.0°
C31N30C04C030.0°0.0°
C31N30C04N05180.0°179.9°
N01C02C03C04179.9°180.0°
N01C02C03N290.1°0.1°
C02N01H012H011120.0°180.0°
C02C03C04N300.0°0.0°
C02C03C04N29180.0°180.0°
C02C03C04N05180.0°179.9°
C02C03N29C28179.9°179.9°
C03C02N01H012179.9°0.0°
C03C02N01H01160.1°180.0°
N30C04C03N05180.0°180.0°
N30C04C03N29180.0°180.0°
N30C04N05C060.4°0.0°
N30C04N05C28179.9°179.9°
C04N30C31H311180.0°179.9°
C04C03N29C280.1°0.1°
C03C04N05C06179.7°179.9°
C03C04N05C280.0°0.2°
N29C03C04N050.0°0.0°
C03N29C28N050.1°0.2°
C03N29C28H281179.9°180.0°
C04N05C06C2680.5°85.0°
C04N05C28N290.1°0.3°
C04N05C06C28179.7°179.9°
C04N05C06O07162.8°161.0°
C04N05C28H281179.9°180.0°
C04N05C06H06137.2°38.0°
O27C26C24C06118.9°118.2°
O27C26C24H261123.8°123.6°
O27C26C06H261124.8°123.6°
O27C26C24O2535.3°20.4°
O27C26C24C0881.0°139.1°
O27C26C06N05144.2°86.3°
O27C26C06O0793.1°155.2°
O27C26C24H241156.9°102.3°
O27C26C06H06126.0°36.8°
C24C26C06H261117.5°118.2°
C26C24O25C08112.4°114.8°
C26C24O25H241121.4°122.6°
C26C24C08H241119.5°118.6°
C24C26C06N0598.0°155.5°
C24C26C06O0724.7°37.0°
C26C24C08O0733.7°2.0°
C26C24C08C09151.8°121.4°
C24C26C06H061143.8°81.4°
C26C24C08H08182.9°117.4°
C26C24O25H251180.0°65.3°
C24C26O27H271180.0°61.5°
C06C26C24O25154.2°97.8°
C06C26C24C0837.9°20.9°
C26C06N05O07116.7°114.0°
C26C06N05H061117.7°123.1°
C26C06N05C2899.8°94.9°
C26C06O07H061116.4°118.5°
C26C06O07C085.1°40.1°
C06C26C24H24184.2°139.6°
C06C26O27H27165.5°174.2°
O25C24C08H241124.2°122.6°
O25C24C08O07150.0°120.8°
O25C24C08C0991.9°119.8°
O25C24C26H26188.6°144.0°
O25C24C08H08133.4°1.4°
N29C28N05C06179.6°179.8°
N29C28N05H281180.0°179.7°
C24C08O07C0619.7°26.5°
C24C08O07C09123.1°119.5°
C24C08O07H081119.8°119.4°
C24C08C09H081127.1°121.1°
C24C08C09O10155.8°175.0°
C08C24C26H261155.1°97.3°
C24C08C09H09184.5°55.0°
C24C08C09H09236.1°64.9°
C08C24O25H25167.6°179.9°
N05C06O07H061123.9°123.0°
N05C06O07C08114.6°158.6°
N05C06C26H26119.4°37.3°
C06N05C28H2810.4°0.1°
C28N05C06O0716.8°19.2°
C28N05C06H061142.4°142.1°
C06O07C08C09142.8°146.0°
O07C06C26H261142.1°81.2°
C06O07C08H081100.1°92.9°
O07C08C09H081116.3°121.1°
O07C08C09O1039.3°67.2°
O07C08C24H24185.9°116.6°
C08O07C06H061121.5°78.5°
O07C08C09H091159.0°172.8°
O07C08C09H09280.5°52.9°
C08C09O10H091119.7°120.0°
C08C09O10H092119.7°120.1°
C08C09O10P11158.1°180.0°
C09C08C24H24132.3°2.8°
C08C09H091H092120.9°120.0°
C21C20C19H201119.9°119.9°
C21C20C19H202119.9°120.0°
C21C20C19C18177.3°NaN°
C21C20H201H202120.2°120.0°
C20C21H212H213120.0°120.0°
C20C21H212H211120.0°120.0°
C20C21H213H211120.0°120.0°
C21C20C19H19257.2°60.0°
C21C20C19H19162.6°60.0°
C20C19C18H192120.1°120.0°
C20C19C18H191120.1°120.0°
C20C19C18C17153.7°NaN°
C19C20H201H202120.2°120.1°
C19C20C21H212180.0°60.0°
C19C20C21H21360.0°60.0°
C19C20C21H21160.0°180.0°
C20C19C18H18286.4°60.0°
C20C19C18H18133.9°60.0°
C20C19H192H191119.7°120.0°
C09O10P11O1231.9°55.0°
C09O10P11O1387.3°175.0°
C09O10P11O23153.2°65.0°
O10C09C08H08177.0°53.9°
O10C09H091H092120.8°120.0°
C19C18C17H182119.8°120.1°
C19C18C17H181119.8°119.9°
C19C18C17C16144.4°NaN°
C19C18C17H17295.5°60.0°
C19C18C17H17124.3°60.1°
C18C19C20H20162.7°60.1°
C18C19C20H20257.4°60.0°
C19C18H182H181120.5°120.0°
C18C19H192H191119.7°120.0°
C18C17C16H172120.1°120.0°
C18C17C16H171120.1°120.0°
C18C17C16C15139.3°180.0°
C18C17H172H171119.7°120.0°
C18C17C16H162100.9°60.0°
C18C17C16H16119.5°60.0°
C17C18H182H181120.5°120.0°
C17C18C19H19233.7°60.0°
C17C18C19H19186.1°60.0°
C17C16C15H162119.8°120.0°
C17C16C15H161119.8°120.0°
C17C16C15C14170.4°180.0°
C17C16C15H15150.3°60.0°
C17C16C15H15269.6°60.0°
C16C17H172H171119.7°120.0°
C17C16H162H161120.5°120.0°
C16C17C18H18224.6°59.9°
C16C17C18H18195.7°60.1°
O10P11O13C1420.8°175.0°
O10P11O12O13118.8°120.0°
O10P11O12O23121.7°120.0°
O10P11O13O23120.4°120.0°
P11O10C09H09138.4°60.0°
P11O10C09H09282.2°60.0°
O10P11O23H1121.4°60.0°
C16C15C14H151120.0°120.0°
C16C15C14H152120.1°120.0°
C16C15C14O2229.3°0.0°
C16C15C14O13150.6°180.0°
C16C15H151H152119.9°120.0°
C15C16C17H17219.2°60.0°
C15C16C17H171100.6°60.0°
C15C16H162H161120.5°120.0°
C15C14O22O13179.9°179.9°
C15C14O13P11152.8°180.0°
C14C15H151H152119.9°120.0°
C14C15C16H16269.9°60.0°
C14C15C16H16150.5°60.0°
O22C14O13P1127.3°0.0°
O22C14C15H15190.7°120.0°
O22C14C15H152149.4°120.0°
C14O13P11O12140.5°55.0°
C14O13P11O2399.5°65.0°
O13C14C15H15189.4°60.1°
O13C14C15H15230.5°59.9°
O12P11O13O23119.9°120.0°
O12P11O23H10.0°180.0°
O13P11O23H1119.5°60.0°
H151C15C16H162170.1°180.0°
H151C15C16H16169.5°60.0°
H152C15C16H16250.2°60.0°
H152C15C16H161170.5°NaN°
H172C17C16H162139.0°NaN°
H172C17C16H161100.6°60.0°
H172C17C18H182144.7°180.0°
H172C17C18H18124.4°59.9°
H171C17C16H16219.2°60.0°
H171C17C16H161139.6°180.0°
H171C17C18H18295.5°60.0°
H171C17C18H181144.2°180.0°
H201C20C21H21260.1°60.0°
H201C20C21H21360.0°180.0°
H201C20C21H211179.9°60.0°
H201C20C19H192177.2°179.9°
H201C20C19H19157.4°59.9°
H202C20C21H21260.0°179.9°
H202C20C21H213179.9°60.0°
H202C20C21H21160.0°60.0°
H202C20C19H19262.7°60.0°
H202C20C19H191177.5°180.0°
H212C21H213H211120.0°120.0°
H241C24C26H26133.0°21.3°
H241C24C08H081157.6°124.0°
H241C24O25H25158.5°57.4°
H261C26C06H06198.8°160.3°
H261C26O27H27157.7°62.2°
H081C08C09H09142.7°66.1°
H081C08C09H092163.2°174.0°
H182C18C19H192153.5°60.0°
H182C18C19H19133.7°180.0°
H181C18C19H19286.2°180.0°
H181C18C19H191154.0°60.0°

247947

PDB entries from 2026-01-21

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