C5P
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O3P | P | sing | 1.61Å | 1.58Å | |
| O3P | HOP3 | sing | 0.97Å | 0.95Å | |
| P | O1P | doub | 1.48Å | 1.44Å | |
| P | O2P | sing | 1.61Å | 1.56Å | |
| P | O5' | sing | 1.61Å | 1.61Å | |
| O2P | HOP2 | sing | 0.97Å | 0.95Å | |
| O5' | C5' | sing | 1.43Å | 1.39Å | |
| C5' | C4' | sing | 1.53Å | 1.45Å | |
| C5' | H5'1 | sing | 1.09Å | 1.10Å | |
| C5' | H5'2 | sing | 1.09Å | 1.10Å | |
| C4' | O4' | sing | 1.45Å | 1.43Å | |
| C4' | C3' | sing | 1.54Å | 1.56Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| O4' | C1' | sing | 1.44Å | 1.41Å | |
| C3' | O3' | sing | 1.43Å | 1.45Å | |
| C3' | C2' | sing | 1.55Å | 1.51Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| C2' | O2' | sing | 1.43Å | 1.41Å | |
| C2' | C1' | sing | 1.54Å | 1.48Å | |
| C2' | H2'1 | sing | 1.09Å | 1.10Å | |
| O2' | HO2' | sing | 0.97Å | 0.95Å | |
| C1' | N1 | sing | 1.47Å | 1.57Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| N1 | C2 | sing | 1.35Å | 1.44Å | |
| N1 | C6 | sing | 1.36Å | 1.43Å | |
| C2 | N3 | sing | 1.33Å | 1.36Å | |
| C2 | O2 | doub | 1.22Å | 1.25Å | |
| N3 | C4 | doub | 1.33Å | 1.42Å | |
| C4 | C5 | sing | 1.41Å | 1.43Å | |
| C4 | N4 | sing | 1.37Å | 1.36Å | |
| C5 | C6 | doub | 1.35Å | 1.39Å | |
| C5 | H5 | sing | 1.08Å | 1.08Å | |
| C6 | H6 | sing | 1.08Å | 1.08Å | |
| N4 | HN41 | sing | 0.97Å | 1.00Å | |
| N4 | HN42 | sing | 0.97Å | 1.00Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| P | O3P | HOP3 | 109.5° | 106.8° |
| O3P | P | O1P | 112.7° | 109.5° |
| O3P | P | O2P | 115.3° | 109.5° |
| O3P | P | O5' | 104.5° | 109.5° |
| O1P | P | O2P | 117.1° | 109.5° |
| O1P | P | O5' | 105.9° | 109.4° |
| O2P | P | O5' | 99.0° | 109.4° |
| P | O2P | HOP2 | 109.5° | 106.8° |
| P | O5' | C5' | 122.0° | 106.8° |
| O5' | C5' | C4' | 105.7° | 109.5° |
| O5' | C5' | H5'1 | 110.7° | 109.5° |
| O5' | C5' | H5'2 | 111.5° | 109.5° |
| C4' | C5' | H5'1 | 110.8° | 109.4° |
| C4' | C5' | H5'2 | 111.6° | 109.4° |
| C5' | C4' | O4' | 125.5° | 110.4° |
| C5' | C4' | C3' | 117.3° | 110.5° |
| C5' | C4' | H4' | 86.2° | 110.3° |
| H5'1 | C5' | H5'2 | 106.6° | 109.5° |
| O4' | C4' | C3' | 106.6° | 104.8° |
| O4' | C4' | H4' | 103.1° | 110.4° |
| C4' | O4' | C1' | 109.2° | 105.3° |
| C3' | C4' | H4' | 115.6° | 110.4° |
| C4' | C3' | O3' | 120.7° | 110.5° |
| C4' | C3' | C2' | 103.7° | 104.1° |
| C4' | C3' | H3' | 113.0° | 110.5° |
| O4' | C1' | C2' | 109.3° | 104.9° |
| O4' | C1' | N1 | 90.4° | 110.4° |
| O4' | C1' | H1' | 121.4° | 110.4° |
| O3' | C3' | C2' | 122.9° | 110.5° |
| O3' | C3' | H3' | 85.1° | 110.5° |
| C3' | O3' | HO3' | 109.5° | 106.8° |
| C2' | C3' | H3' | 109.9° | 110.6° |
| C3' | C2' | O2' | 97.3° | 110.5° |
| C3' | C2' | C1' | 106.9° | 104.0° |
| C3' | C2' | H2'1 | 113.1° | 110.5° |
| O2' | C2' | C1' | 89.1° | 110.7° |
| O2' | C2' | H2'1 | 126.9° | 110.5° |
| C2' | O2' | HO2' | 109.5° | 106.8° |
| C1' | C2' | H2'1 | 119.3° | 110.4° |
| C2' | C1' | N1 | 110.9° | 110.4° |
| C2' | C1' | H1' | 104.3° | 110.4° |
| N1 | C1' | H1' | 120.1° | 110.3° |
| C1' | N1 | C2 | 118.9° | 119.8° |
| C1' | N1 | C6 | 126.5° | 119.8° |
| C2 | N1 | C6 | 114.6° | 120.4° |
| N1 | C2 | N3 | 123.8° | 121.1° |
| N1 | C2 | O2 | 120.2° | 119.5° |
| N1 | C6 | C5 | 124.7° | 119.2° |
| N1 | C6 | H6 | 117.6° | 120.4° |
| N3 | C2 | O2 | 116.0° | 119.4° |
| C2 | N3 | C4 | 118.9° | 120.7° |
| N3 | C4 | C5 | 121.6° | 119.6° |
| N3 | C4 | N4 | 119.5° | 120.2° |
| C5 | C4 | N4 | 118.9° | 120.2° |
| C4 | C5 | C6 | 116.4° | 119.0° |
| C4 | C5 | H5 | 121.8° | 120.5° |
| C4 | N4 | HN41 | 108.4° | 120.1° |
| C4 | N4 | HN42 | 125.8° | 120.0° |
| C6 | C5 | H5 | 121.8° | 120.5° |
| C5 | C6 | H6 | 117.7° | 120.4° |
| HN41 | N4 | HN42 | 125.8° | 119.9° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O3P | P | O1P | O2P | 137.2° | 120.0° |
| O3P | P | O1P | O5' | 113.7° | 120.0° |
| O3P | P | O2P | O5' | 110.8° | 120.0° |
| O3P | P | O2P | HOP2 | 157.4° | 59.9° |
| O3P | P | O5' | C5' | 177.5° | 175.0° |
| HOP3 | O3P | P | O1P | 135.0° | 60.0° |
| HOP3 | O3P | P | O2P | 3.0° | 60.1° |
| HOP3 | O3P | P | O5' | 110.5° | 180.0° |
| O1P | P | O2P | O5' | 113.1° | 119.9° |
| O1P | P | O2P | HOP2 | 21.3° | 180.0° |
| O1P | P | O5' | C5' | 58.3° | 55.0° |
| O2P | P | O5' | C5' | 63.4° | 65.0° |
| O5' | P | O2P | HOP2 | 91.8° | 60.0° |
| P | O5' | C5' | C4' | 178.5° | 180.0° |
| P | O5' | C5' | H5'1 | 61.5° | 60.0° |
| P | O5' | C5' | H5'2 | 57.0° | 60.0° |
| O5' | C5' | C4' | H5'1 | 120.0° | 120.0° |
| O5' | C5' | C4' | H5'2 | 121.4° | 120.0° |
| O5' | C5' | H5'1 | H5'2 | 121.5° | 120.0° |
| O5' | C5' | C4' | O4' | 71.4° | 66.4° |
| O5' | C5' | C4' | C3' | 68.3° | 178.1° |
| O5' | C5' | C4' | H4' | 174.8° | 55.8° |
| C4' | C5' | H5'1 | H5'2 | 121.6° | 120.0° |
| C5' | C4' | O4' | C3' | 143.2° | 119.0° |
| C5' | C4' | O4' | H4' | 94.7° | 122.2° |
| C5' | C4' | C3' | H4' | 99.4° | 122.3° |
| C5' | C4' | O4' | C1' | 164.5° | 159.5° |
| C5' | C4' | C3' | O3' | 55.4° | 98.3° |
| C5' | C4' | C3' | C2' | 161.8° | 142.9° |
| C5' | C4' | C3' | H3' | 42.9° | 24.2° |
| H5'1 | C5' | C4' | O4' | 168.6° | 173.5° |
| H5'1 | C5' | C4' | C3' | 51.7° | 58.1° |
| H5'1 | C5' | C4' | H4' | 65.3° | 64.2° |
| H5'2 | C5' | C4' | O4' | 50.0° | 53.6° |
| H5'2 | C5' | C4' | C3' | 170.3° | 61.9° |
| H5'2 | C5' | C4' | H4' | 53.4° | 175.8° |
| O4' | C4' | C3' | H4' | 113.9° | 118.8° |
| O4' | C4' | C3' | O3' | 157.9° | 142.8° |
| O4' | C4' | C3' | C2' | 15.1° | 24.1° |
| O4' | C4' | C3' | H3' | 103.8° | 94.7° |
| C4' | O4' | C1' | C2' | 19.1° | 40.5° |
| C4' | O4' | C1' | N1 | 131.4° | 159.4° |
| C4' | O4' | C1' | H1' | 102.3° | 78.4° |
| C3' | C4' | O4' | C1' | 21.3° | 40.5° |
| C4' | C3' | O3' | C2' | 135.5° | 114.7° |
| C4' | C3' | O3' | H3' | 113.9° | 122.6° |
| C4' | C3' | C2' | H3' | 121.0° | 118.7° |
| C4' | C3' | O3' | HO3' | 25.4° | 180.0° |
| C4' | C3' | C2' | O2' | 87.2° | 118.8° |
| C4' | C3' | C2' | C1' | 4.1° | 0.1° |
| C4' | C3' | C2' | H2'1 | 137.4° | 118.6° |
| H4' | C4' | O4' | C1' | 100.9° | 78.3° |
| H4' | C4' | C3' | O3' | 44.0° | 23.9° |
| H4' | C4' | C3' | C2' | 98.7° | 94.8° |
| H4' | C4' | C3' | H3' | 142.4° | 146.5° |
| O4' | C1' | C2' | C3' | 8.6° | 23.9° |
| O4' | C1' | C2' | O2' | 105.9° | 142.6° |
| O4' | C1' | C2' | N1 | 98.1° | 118.9° |
| O4' | C1' | C2' | H1' | 131.3° | 118.9° |
| O4' | C1' | C2' | H2'1 | 121.3° | 94.7° |
| O4' | C1' | N1 | H1' | 127.3° | 122.3° |
| O4' | C1' | N1 | C2 | 131.1° | 52.0° |
| O4' | C1' | N1 | C6 | 49.6° | 128.0° |
| O3' | C3' | C2' | H3' | 97.3° | 122.6° |
| O3' | C3' | C2' | O2' | 54.5° | 0.1° |
| O3' | C3' | C2' | C1' | 145.8° | 118.8° |
| O3' | C3' | C2' | H2'1 | 80.9° | 122.7° |
| C2' | C3' | O3' | HO3' | 110.2° | 65.3° |
| C3' | C2' | O2' | C1' | 106.9° | 114.7° |
| C3' | C2' | O2' | H2'1 | 126.2° | 122.6° |
| C3' | C2' | C1' | H2'1 | 129.9° | 118.6° |
| C3' | C2' | O2' | HO2' | 100.9° | 61.5° |
| C3' | C2' | C1' | N1 | 106.8° | 142.8° |
| C3' | C2' | C1' | H1' | 122.7° | 95.0° |
| H3' | C3' | O3' | HO3' | 139.3° | 57.4° |
| H3' | C3' | C2' | O2' | 151.8° | 122.6° |
| H3' | C3' | C2' | C1' | 116.9° | 118.5° |
| H3' | C3' | C2' | H2'1 | 16.4° | 0.0° |
| O2' | C2' | C1' | H2'1 | 132.8° | 122.7° |
| O2' | C2' | C1' | N1 | 155.9° | 98.5° |
| O2' | C2' | C1' | H1' | 25.3° | 23.7° |
| C1' | C2' | O2' | HO2' | 6.1° | 176.2° |
| C2' | C1' | N1 | H1' | 121.7° | 122.2° |
| C2' | C1' | N1 | C2 | 117.9° | 63.4° |
| C2' | C1' | N1 | C6 | 61.4° | 116.5° |
| H2'1 | C2' | O2' | HO2' | 132.9° | 61.2° |
| H2'1 | C2' | C1' | N1 | 23.2° | 24.2° |
| H2'1 | C2' | C1' | H1' | 107.4° | 146.4° |
| C1' | N1 | C2 | C6 | 179.4° | 180.0° |
| C1' | N1 | C2 | N3 | 179.8° | 180.0° |
| C1' | N1 | C2 | O2 | 0.4° | 0.1° |
| C1' | N1 | C6 | C5 | 180.0° | 179.7° |
| C1' | N1 | C6 | H6 | 0.0° | 0.0° |
| H1' | C1' | N1 | C2 | 3.8° | 174.3° |
| H1' | C1' | N1 | C6 | 176.9° | 5.7° |
| N1 | C2 | N3 | O2 | 179.4° | 179.9° |
| N1 | C2 | N3 | C4 | 0.2° | 0.0° |
| C2 | N1 | C6 | C5 | 0.7° | 0.3° |
| C2 | N1 | C6 | H6 | 179.3° | 180.0° |
| C6 | N1 | C2 | N3 | 0.5° | 0.0° |
| C6 | N1 | C2 | O2 | 178.9° | 180.0° |
| N1 | C6 | C5 | C4 | 0.2° | 0.5° |
| N1 | C6 | C5 | H6 | 180.0° | 179.7° |
| N1 | C6 | C5 | H5 | 179.8° | 180.0° |
| C2 | N3 | C4 | C5 | 0.7° | 0.2° |
| C2 | N3 | C4 | N4 | 179.4° | 180.0° |
| O2 | C2 | N3 | C4 | 179.6° | 179.9° |
| N3 | C4 | C5 | N4 | 179.8° | 179.7° |
| N3 | C4 | C5 | C6 | 0.5° | 0.5° |
| N3 | C4 | C5 | H5 | 179.5° | 180.0° |
| N3 | C4 | N4 | HN41 | 0.1° | 0.0° |
| N3 | C4 | N4 | HN42 | 179.9° | 179.7° |
| C4 | C5 | C6 | H5 | 180.0° | 179.5° |
| C4 | C5 | C6 | H6 | 179.8° | 179.7° |
| C5 | C4 | N4 | HN41 | 179.9° | 179.7° |
| C5 | C4 | N4 | HN42 | 0.1° | 0.5° |
| N4 | C4 | C5 | C6 | 179.6° | 179.7° |
| N4 | C4 | C5 | H5 | 0.4° | 0.2° |
| C4 | N4 | HN41 | HN42 | 180.0° | 179.8° |
| H5 | C5 | C6 | H6 | 0.2° | 0.2° |
