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Summary Geometry Related PDB entries

C5J

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
N6	C5	sing	1.35Å	1.36Å
N1	C2	sing	1.35Å	1.34Å
O7	C5	doub	1.22Å	1.21Å
C5	N4	sing	1.35Å	1.37Å
C2	N4	sing	1.35Å	1.36Å
C2	O3	doub	1.22Å	1.21Å
N1	H1	sing	0.97Å	1.00Å
N1	H2	sing	0.97Å	1.00Å
N6	H3	sing	0.97Å	1.00Å
N6	H4	sing	0.97Å	1.00Å
N4	H5	sing	0.97Å	1.00Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
N6	C5	O7	119.6°	120.0°
N6	C5	N4	115.4°	120.0°
C5	N6	H3	120.0°	120.0°
C5	N6	H4	120.0°	120.0°
N1	C2	N4	116.8°	120.0°
N1	C2	O3	119.5°	120.0°
C2	N1	H1	120.0°	120.0°
C2	N1	H2	120.0°	120.0°
O7	C5	N4	124.8°	120.0°
C5	N4	C2	124.2°	120.0°
C5	N4	H5	117.9°	120.0°
N4	C2	O3	123.7°	120.0°
C2	N4	H5	117.9°	120.0°
H1	N1	H2	120.0°	120.0°
H3	N6	H4	120.0°	120.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
N6	C5	O7	N4	175.1°	180.0°
N6	C5	N4	C2	139.7°	NaN°
C5	N6	H3	H4	180.0°	179.9°
N6	C5	N4	H5	40.3°	0.0°
N1	C2	N4	C5	15.5°	179.7°
N1	C2	N4	O3	179.0°	179.7°
C2	N1	H1	H2	180.0°	180.0°
N1	C2	N4	H5	164.5°	0.3°
O7	C5	N4	C2	44.9°	0.0°
O7	C5	N6	H3	0.0°	180.0°
O7	C5	N6	H4	180.0°	0.1°
O7	C5	N4	H5	135.0°	180.0°
C5	N4	C2	H5	180.0°	180.0°
C5	N4	C2	O3	165.5°	0.0°
N4	C5	N6	H3	175.6°	0.0°
N4	C5	N6	H4	4.4°	180.0°
N4	C2	N1	H1	179.1°	0.0°
N4	C2	N1	H2	0.9°	180.0°
O3	C2	N1	H1	0.0°	179.7°
O3	C2	N1	H2	180.0°	0.3°
O3	C2	N4	H5	14.5°	180.0°

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