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C5G

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
N1C2sing1.34Å1.38ÅAromatic
N1C6sing1.36Å1.38ÅAromatic
N1C1Dsing1.46Å1.47Å
C2N3sing1.33Å1.37ÅAromatic
C2O2doub1.22Å1.23Å
N3C4doub1.33Å1.39ÅAromatic
C4C5sing1.41Å1.43ÅAromatic
C4N4sing1.38Å1.22Å
C5C6doub1.35Å1.31ÅAromatic
C5H5sing1.08Å1.08Å
C6H6sing1.08Å1.08Å
N4H41sing0.97Å1.00Å
N4H42sing0.97Å1.00Å
C1DC2Dsing1.54Å1.52Å
C1DO4Dsing1.44Å1.39Å
C1DH1Dsing1.09Å1.10Å
C2DO2Dsing1.43Å1.43Å
C2DC3Dsing1.55Å1.55Å
C2DH2Dsing1.09Å1.10Å
O2DHO'2sing0.97Å0.95Å
C3DC4Dsing1.55Å1.52Å
C3DO3Dsing1.43Å1.42Å
C3DH3Dsing1.09Å1.10Å
C4DO4Dsing1.44Å1.46Å
C4DC5Dsing1.53Å1.49Å
C4DH4Dsing1.09Å1.10Å
O3DH3Tsing0.97Å0.95Å
C5DO5Dsing1.43Å1.44Å
C5DH5'1sing1.09Å1.10Å
C5DH5'2sing1.09Å1.10Å
O5DPAsing1.61Å1.61Å
PAO1Adoub1.48Å1.49Å
PAO2Asing1.61Å1.47Å
PAO3Asing1.61Å1.64Å
O2AHO2Asing0.97Å0.95Å
O3APBsing1.61Å1.54Å
PBO1Bdoub1.48Å1.50Å
PBO2Bsing1.61Å1.51Å
PBO1'sing1.61Å1.64Å
O2BHO2Bsing0.97Å0.95Å
O1'C1'sing1.43Å1.42Å
C1'C2'sing1.53Å1.51Å
C1'O5'sing1.43Å1.46Å
C1'H1'sing1.09Å1.10Å
C2'O2'sing1.43Å1.44Å
C2'C3'sing1.53Å1.54Å
C2'H2'sing1.09Å1.10Å
O2'HODsing0.97Å0.95Å
C3'O3'sing1.43Å1.43Å
C3'C4'sing1.53Å1.51Å
C3'H3'sing1.09Å1.10Å
O3'HO'3sing0.97Å0.95Å
C4'O4'sing1.43Å1.43Å
C4'C5'sing1.53Å1.54Å
C4'H4'sing1.09Å1.10Å
O4'HO'4sing0.97Å0.95Å
C5'C6'sing1.53Å1.51Å
C5'O5'sing1.43Å1.45Å
C5'H5'sing1.09Å1.10Å
C6'O6'sing1.43Å1.43Å
C6'H6'1sing1.09Å1.10Å
C6'H6'2sing1.09Å1.10Å
O6'HO'6sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C2N1C6120.9°120.4°
C2N1C1D119.3°119.8°
N1C2N3114.2°121.1°
N1C2O2124.8°119.5°
C6N1C1D119.8°119.8°
N1C6C5123.2°119.3°
N1C6H6118.4°120.4°
N1C1DC2D111.9°110.4°
N1C1DO4D109.8°110.4°
N1C1DH1D106.6°110.4°
N3C2O2121.0°119.4°
C2N3C4127.7°120.7°
N3C4C5113.6°119.6°
N3C4N4119.0°120.2°
C5C4N4127.4°120.2°
C4C5C6120.4°119.0°
C4C5H5119.8°120.5°
C4N4H41126.2°120.0°
C4N4H42107.6°120.0°
C6C5H5119.8°120.5°
C5C6H6118.4°120.3°
H41N4H42126.2°120.0°
C2DC1DO4D106.2°104.9°
C2DC1DH1D110.2°110.4°
C1DC2DO2D112.7°110.8°
C1DC2DC3D104.8°104.0°
C1DC2DH2D110.7°110.4°
O4DC1DH1D112.2°110.3°
C1DO4DC4D109.1°105.3°
O2DC2DC3D110.0°110.5°
O2DC2DH2D105.5°110.4°
C2DO2DHO'2109.5°106.8°
C3DC2DH2D113.3°110.5°
C2DC3DC4D100.8°104.0°
C2DC3DO3D114.6°110.5°
C2DC3DH3D113.3°110.6°
C4DC3DO3D113.2°110.5°
C4DC3DH3D114.7°110.5°
C3DC4DO4D109.4°104.8°
C3DC4DC5D113.5°110.5°
C3DC4DH4D106.1°110.4°
O3DC3DH3D101.0°110.5°
C3DO3DH3T109.5°106.7°
O4DC4DC5D107.4°110.3°
O4DC4DH4D112.4°110.4°
C5DC4DH4D108.2°110.4°
C4DC5DO5D107.3°109.5°
C4DC5DH5'1110.7°109.5°
C4DC5DH5'2110.2°109.5°
O5DC5DH5'1110.7°109.5°
O5DC5DH5'2110.2°109.5°
C5DO5DPA119.2°106.8°
H5'1C5DH5'2107.8°109.4°
O5DPAO1A115.0°109.5°
O5DPAO2A115.5°109.5°
O5DPAO3A97.2°109.4°
O1APAO2A110.6°109.5°
O1APAO3A109.3°109.4°
O2APAO3A108.0°109.5°
PAO2AHO2A109.5°106.9°
PAO3APB127.9°106.8°
O3APBO1B111.7°109.5°
O3APBO2B106.5°109.5°
O3APBO1'108.8°109.5°
O1BPBO2B108.2°109.5°
O1BPBO1'110.0°109.4°
O2BPBO1'111.6°109.5°
PBO2BHO2B109.5°106.8°
PBO1'C1'118.8°106.8°
O1'C1'C2'103.0°109.4°
O1'C1'O5'109.6°109.4°
O1'C1'H1'114.8°109.4°
C2'C1'O5'113.0°109.8°
C2'C1'H1'111.5°109.4°
C1'C2'O2'107.0°109.5°
C1'C2'C3'109.9°109.1°
C1'C2'H2'110.9°109.6°
O5'C1'H1'105.1°109.4°
C1'O5'C5'113.4°107.6°
O2'C2'C3'109.7°109.5°
O2'C2'H2'111.1°109.5°
C2'O2'HOD109.5°106.8°
C3'C2'H2'108.3°109.6°
C2'C3'O3'112.8°109.8°
C2'C3'C4'109.7°108.6°
C2'C3'H3'106.5°109.7°
O3'C3'C4'107.6°109.6°
O3'C3'H3'108.6°109.6°
C3'O3'HO'3109.5°106.8°
C4'C3'H3'111.8°109.6°
C3'C4'O4'112.6°109.7°
C3'C4'C5'109.7°109.0°
C3'C4'H4'108.5°109.5°
O4'C4'C5'112.9°109.6°
O4'C4'H4'104.9°109.6°
C4'O4'HO'4109.5°106.8°
C5'C4'H4'108.0°109.5°
C4'C5'C6'110.8°109.4°
C4'C5'O5'111.3°109.8°
C4'C5'H5'105.9°109.4°
C6'C5'O5'104.8°109.4°
C6'C5'H5'112.3°109.4°
C5'C6'O6'109.9°109.5°
C5'C6'H6'1109.2°109.5°
C5'C6'H6'2109.3°109.4°
O5'C5'H5'111.8°109.4°
O6'C6'H6'1109.2°109.5°
O6'C6'H6'2109.3°109.4°
C6'O6'HO'6109.5°106.8°
H6'1C6'H6'2109.9°109.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C2N1C6C1D178.7°179.9°
N1C2N3O2179.3°180.0°
N1C2N3C40.8°0.0°
C2N1C6C50.1°0.2°
C2N1C6H6179.9°180.0°
C2N1C1DC2D121.2°63.5°
C2N1C1DO4D121.1°52.0°
C2N1C1DH1D0.7°174.3°
C6N1C2N30.6°0.0°
C6N1C2O2178.7°180.0°
N1C6C5C40.6°0.5°
N1C6C5H6180.0°179.8°
N1C6C5H5179.4°179.9°
C6N1C1DC2D57.5°116.6°
C6N1C1DO4D60.2°127.9°
C6N1C1DH1D178.0°5.7°
C1DN1C2N3179.3°180.0°
C1DN1C2O20.0°0.0°
C1DN1C6C5178.6°179.7°
C1DN1C6H61.4°0.1°
N1C1DC2DO4D119.8°118.9°
N1C1DC2DH1D118.4°122.3°
N1C1DO4DH1D118.4°122.3°
N1C1DC2DO2D88.6°98.5°
N1C1DC2DC3D151.8°142.7°
N1C1DC2DH2D29.3°24.2°
N1C1DO4DC4D144.5°159.3°
C2N3C4C50.3°0.3°
C2N3C4N4179.3°180.0°
O2C2N3C4178.5°180.0°
N3C4C5N4179.6°179.7°
N3C4C5C60.4°0.6°
N3C4C5H5179.6°180.0°
N3C4N4H41179.8°0.1°
N3C4N4H420.2°179.8°
C4C5C6H5180.0°179.4°
C4C5C6H6179.4°179.7°
C5C4N4H410.2°179.7°
C5C4N4H42179.7°0.6°
N4C4C5C6180.0°179.8°
N4C4C5H50.0°0.4°
C4N4H41H42180.0°179.7°
H5C5C6H60.6°0.3°
C2DC1DO4DH1D120.5°118.8°
C1DC2DO2DC3D116.5°114.7°
C1DC2DO2DH2D120.9°122.7°
C1DC2DC3DH2D120.8°118.5°
C1DC2DO2DHO'2141.6°176.2°
C1DC2DC3DC4D26.8°0.2°
C1DC2DC3DO3D95.1°118.8°
C1DC2DC3DH3D149.8°118.5°
C2DC1DO4DC4D23.3°40.5°
O4DC1DC2DO2D151.6°142.6°
O4DC1DC2DC3D32.0°23.8°
O4DC1DC2DH2D90.5°94.7°
C1DO4DC4DC3D5.6°40.5°
C1DO4DC4DC5D129.3°159.4°
C1DO4DC4DH4D111.9°78.3°
H1DC1DC2DO2D29.8°23.7°
H1DC1DC2DC3D89.8°95.0°
H1DC1DC2DH2D147.7°146.4°
H1DC1DO4DC4D97.2°78.4°
O2DC2DC3DH2D117.9°122.5°
O2DC2DC3DC4D148.1°118.8°
O2DC2DC3DO3D26.3°0.1°
O2DC2DC3DH3D88.8°122.5°
C3DC2DO2DHO'2101.9°61.4°
C2DC3DC4DO3D122.8°118.7°
C2DC3DC4DH3D122.1°118.7°
C2DC3DO3DH3D122.1°122.8°
C2DC3DC4DO4D13.9°24.1°
C2DC3DC4DC5D106.1°142.9°
C2DC3DC4DH4D135.3°94.8°
C2DC3DO3DH3T77.8°65.3°
H2DC2DO2DHO'220.7°61.1°
H2DC2DC3DC4D94.0°118.7°
H2DC2DC3DO3D144.2°122.7°
H2DC2DC3DH3D29.1°0.0°
C4DC3DO3DH3D123.1°122.6°
C3DC4DO4DC5D123.6°118.9°
C3DC4DO4DH4D117.6°118.8°
C3DC4DC5DH4D117.4°122.3°
C4DC3DO3DH3T167.4°180.0°
C3DC4DC5DO5D62.8°178.1°
C3DC4DC5DH5'158.0°58.1°
C3DC4DC5DH5'2177.2°61.9°
O3DC3DC4DO4D109.0°142.8°
O3DC3DC4DC5D131.1°98.4°
O3DC3DC4DH4D12.5°23.9°
H3DC3DC4DO4D135.9°94.6°
H3DC3DC4DC5D16.0°24.2°
H3DC3DC4DH4D102.6°146.5°
H3DC3DO3DH3T44.3°57.4°
O4DC4DC5DH4D121.5°122.3°
O4DC4DC5DO5D58.3°66.5°
O4DC4DC5DH5'1179.1°173.5°
O4DC4DC5DH5'261.7°53.5°
C4DC5DO5DH5'1120.9°120.0°
C4DC5DO5DH5'2120.0°120.1°
C4DC5DH5'1H5'2120.6°120.0°
C4DC5DO5DPA152.2°180.0°
H4DC4DC5DO5D179.8°55.8°
H4DC4DC5DH5'159.4°64.2°
H4DC4DC5DH5'259.8°175.8°
O5DC5DH5'1H5'2120.6°120.0°
C5DO5DPAO1A38.9°55.0°
C5DO5DPAO2A169.7°65.0°
C5DO5DPAO3A76.3°175.0°
H5'1C5DO5DPA31.3°60.0°
H5'2C5DO5DPA87.8°60.0°
O5DPAO1AO2A133.1°120.0°
O5DPAO1AO3A108.1°119.9°
O5DPAO2AO3A107.6°120.0°
O5DPAO2AHO2A8.5°60.0°
O5DPAO3APB156.3°165.0°
O1APAO2AO3A119.6°120.0°
O1APAO2AHO2A141.3°180.0°
O1APAO3APB36.6°45.0°
O2APAO3APB83.9°75.0°
O3APAO2AHO2A99.1°60.0°
PAO3APBO1B78.8°45.0°
PAO3APBO2B39.2°75.0°
PAO3APBO1'159.7°165.0°
O3APBO1BO2B116.9°120.0°
O3APBO1BO1'120.9°120.0°
O3APBO2BO1'118.6°120.0°
O3APBO2BHO2B131.8°60.0°
O3APBO1'C1'41.1°175.0°
O1BPBO2BO1'121.2°120.0°
O1BPBO2BHO2B11.6°180.0°
O1BPBO1'C1'163.7°55.0°
O2BPBO1'C1'76.2°65.0°
O1'PBO2BHO2B109.6°60.0°
PBO1'C1'C2'162.6°149.8°
PBO1'C1'O5'76.8°89.9°
PBO1'C1'H1'41.2°30.0°
O1'C1'C2'O5'118.2°120.1°
O1'C1'C2'H1'123.7°119.9°
O1'C1'O5'H1'123.9°119.8°
O1'C1'C2'O2'54.5°61.1°
O1'C1'C2'C3'64.5°58.7°
O1'C1'C2'H2'175.8°178.7°
O1'C1'O5'C5'59.9°52.6°
C2'C1'O5'H1'121.9°120.0°
C1'C2'O2'C3'119.2°119.6°
C1'C2'O2'H2'121.2°120.2°
C1'C2'C3'H2'121.3°120.0°
C1'C2'O2'HOD99.6°60.4°
C1'C2'C3'O3'175.7°173.6°
C1'C2'C3'C4'55.8°53.8°
C1'C2'C3'H3'65.3°65.9°
C2'C1'O5'C5'54.3°67.6°
O5'C1'C2'O2'172.7°178.8°
O5'C1'C2'C3'53.6°61.4°
O5'C1'C2'H2'66.0°58.6°
C1'O5'C5'C4'55.1°67.5°
C1'O5'C5'C6'174.8°172.4°
C1'O5'C5'H5'63.2°52.5°
H1'C1'C2'O2'69.1°58.8°
H1'C1'C2'C3'171.8°178.6°
H1'C1'C2'H2'52.1°61.4°
H1'C1'O5'C5'176.2°172.4°
O2'C2'C3'H2'121.4°120.1°
O2'C2'C3'O3'67.0°66.6°
O2'C2'C3'C4'173.1°173.6°
O2'C2'C3'H3'52.0°53.9°
C3'C2'O2'HOD141.2°180.0°
C2'C3'O3'C4'121.1°119.2°
C2'C3'O3'H3'117.7°120.6°
C2'C3'C4'H3'117.8°119.8°
C2'C3'O3'HO'354.7°60.9°
C2'C3'C4'O4'176.0°173.7°
C2'C3'C4'C5'57.3°53.7°
C2'C3'C4'H4'60.5°66.1°
H2'C2'O2'HOD21.6°59.8°
H2'C2'C3'O3'54.4°53.6°
H2'C2'C3'C4'65.5°66.2°
H2'C2'C3'H3'173.4°174.1°
O3'C3'C4'H3'119.1°120.3°
O3'C3'C4'O4'53.0°66.5°
O3'C3'C4'C5'179.7°173.6°
O3'C3'C4'H4'62.6°53.8°
C4'C3'O3'HO'366.4°179.9°
C3'C4'O4'C5'124.9°119.6°
C3'C4'O4'H4'117.7°120.2°
C3'C4'C5'H4'118.0°119.8°
C3'C4'O4'HO'434.8°60.4°
C3'C4'C5'C6'173.2°178.7°
C3'C4'C5'O5'57.0°61.2°
C3'C4'C5'H5'64.7°58.9°
H3'C3'O3'HO'3172.4°59.7°
H3'C3'C4'O4'66.1°53.9°
H3'C3'C4'C5'60.5°66.1°
H3'C3'C4'H4'178.3°174.1°
O4'C4'C5'H4'115.5°120.2°
O4'C4'C5'C6'60.4°58.7°
O4'C4'C5'O5'176.5°178.8°
O4'C4'C5'H5'61.7°61.1°
C5'C4'O4'HO'490.2°180.0°
C4'C5'C6'O5'120.1°120.4°
C4'C5'C6'H5'118.3°119.8°
C4'C5'O5'H5'118.3°120.1°
C4'C5'C6'O6'178.0°174.7°
C4'C5'C6'H6'162.2°54.6°
C4'C5'C6'H6'258.0°65.3°
H4'C4'O4'HO'4152.5°59.8°
H4'C4'C5'C6'55.2°61.5°
H4'C4'C5'O5'61.0°58.6°
H4'C4'C5'H5'177.2°178.7°
C6'C5'O5'H5'121.9°119.8°
C5'C6'O6'H6'1119.8°120.1°
C5'C6'O6'H6'2120.0°120.0°
C5'C6'H6'1H6'2119.9°120.0°
C5'C6'O6'HO'659.1°180.0°
O5'C5'C6'O6'61.9°64.9°
O5'C5'C6'H6'157.9°175.0°
O5'C5'C6'H6'2178.1°55.0°
H5'C5'C6'O6'59.7°54.9°
H5'C5'C6'H6'1179.5°65.2°
H5'C5'C6'H6'260.3°174.9°
O6'C6'H6'1H6'2119.8°120.0°
H6'1C6'O6'HO'6178.9°59.9°
H6'2C6'O6'HO'660.9°60.1°

218853

PDB entries from 2024-04-24

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