C5C
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| N | CA | sing | 1.47Å | 1.47Å | |
| N | H | sing | 1.01Å | 0.98Å | |
| N | H2 | sing | 1.01Å | 1.02Å | |
| CA | C | sing | 1.51Å | 1.51Å | |
| CA | CB | sing | 1.53Å | 1.54Å | |
| CA | HA | sing | 1.09Å | 1.12Å | |
| C | O | doub | 1.21Å | 1.23Å | |
| C | OXT | sing | 1.34Å | 1.33Å | |
| CB | SG | sing | 1.81Å | 1.82Å | |
| CB | HB2 | sing | 1.09Å | 1.11Å | |
| CB | HB3 | sing | 1.09Å | 1.12Å | |
| SG | SD | sing | 2.05Å | 2.04Å | |
| SD | C1 | sing | 1.81Å | 1.83Å | |
| C1 | C2 | sing | 1.54Å | 1.52Å | |
| C1 | C5 | sing | 1.54Å | 1.51Å | |
| C1 | H1 | sing | 1.09Å | 1.12Å | |
| C2 | C3 | sing | 1.54Å | 1.51Å | |
| C2 | H21 | sing | 1.09Å | 1.12Å | |
| C2 | H22 | sing | 1.09Å | 1.11Å | |
| C3 | C4 | sing | 1.55Å | 1.52Å | |
| C3 | H31 | sing | 1.09Å | 1.12Å | |
| C3 | H32 | sing | 1.09Å | 1.11Å | |
| C4 | C5 | sing | 1.55Å | 1.53Å | |
| C4 | H41 | sing | 1.09Å | 1.12Å | |
| C4 | H42 | sing | 1.09Å | 1.11Å | |
| C5 | H51 | sing | 1.09Å | 1.11Å | |
| C5 | H52 | sing | 1.09Å | 1.12Å | |
| OXT | HXT | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| CA | N | H | 118.8° | 106.7° |
| CA | N | H2 | 111.8° | 106.7° |
| N | CA | C | 110.7° | 109.4° |
| N | CA | CB | 111.2° | 109.5° |
| N | CA | HA | 106.8° | 109.4° |
| H | N | H2 | 29.0° | 106.7° |
| C | CA | CB | 107.5° | 109.5° |
| C | CA | HA | 110.6° | 109.5° |
| CA | C | O | 120.9° | 120.1° |
| CA | C | OXT | 115.3° | 119.9° |
| CB | CA | HA | 110.0° | 109.5° |
| CA | CB | SG | 111.8° | 109.5° |
| CA | CB | HB2 | 111.4° | 109.5° |
| CA | CB | HB3 | 111.3° | 109.4° |
| O | C | OXT | 123.9° | 120.0° |
| C | OXT | HXT | 115.3° | 120.0° |
| SG | CB | HB2 | 111.4° | 109.5° |
| SG | CB | HB3 | 111.3° | 109.5° |
| CB | SG | SD | 105.3° | 100.0° |
| HB2 | CB | HB3 | 99.0° | 109.5° |
| SG | SD | C1 | 105.0° | 100.0° |
| SD | C1 | C2 | 114.3° | 110.1° |
| SD | C1 | C5 | 111.2° | 110.1° |
| SD | C1 | H1 | 102.8° | 110.0° |
| C2 | C1 | C5 | 101.6° | 106.6° |
| C2 | C1 | H1 | 112.2° | 110.0° |
| C1 | C2 | C3 | 109.6° | 106.6° |
| C1 | C2 | H21 | 112.2° | 110.1° |
| C1 | C2 | H22 | 112.2° | 110.0° |
| C5 | C1 | H1 | 115.3° | 110.1° |
| C1 | C5 | C4 | 109.0° | 104.2° |
| C1 | C5 | H51 | 112.4° | 110.5° |
| C1 | C5 | H52 | 112.4° | 110.5° |
| C3 | C2 | H21 | 112.2° | 110.0° |
| C3 | C2 | H22 | 112.1° | 110.0° |
| C2 | C3 | C4 | 104.8° | 104.1° |
| C2 | C3 | H31 | 113.9° | 110.5° |
| C2 | C3 | H32 | 114.0° | 110.5° |
| H21 | C2 | H22 | 98.2° | 110.0° |
| C4 | C3 | H31 | 114.0° | 110.5° |
| C4 | C3 | H32 | 114.0° | 110.5° |
| C3 | C4 | C5 | 106.6° | 102.8° |
| C3 | C4 | H41 | 113.3° | 110.8° |
| C3 | C4 | H42 | 113.3° | 110.7° |
| H31 | C3 | H32 | 96.5° | 110.5° |
| C5 | C4 | H41 | 113.3° | 110.8° |
| C5 | C4 | H42 | 113.3° | 110.7° |
| C4 | C5 | H51 | 112.4° | 110.6° |
| C4 | C5 | H52 | 112.4° | 110.5° |
| H41 | C4 | H42 | 97.2° | 110.8° |
| H51 | C5 | H52 | 98.1° | 110.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| CA | N | H | H2 | 83.2° | 113.7° |
| N | CA | C | CB | 121.6° | 120.0° |
| N | CA | C | HA | 118.2° | 119.9° |
| N | CA | CB | HA | 118.1° | 120.0° |
| N | CA | C | O | 14.0° | 30.0° |
| N | CA | C | OXT | 166.7° | 150.0° |
| N | CA | CB | SG | 58.6° | 178.9° |
| N | CA | CB | HB2 | 176.1° | 61.1° |
| N | CA | CB | HB3 | 66.6° | 58.9° |
| H | N | CA | C | 23.6° | 179.5° |
| H | N | CA | CB | 95.9° | 59.4° |
| H | N | CA | HA | 144.0° | 60.6° |
| H2 | N | CA | C | 54.8° | 65.7° |
| H2 | N | CA | CB | 64.6° | 54.3° |
| H2 | N | CA | HA | 175.3° | 174.3° |
| C | CA | CB | HA | 120.6° | 120.1° |
| CA | C | O | OXT | 179.2° | 180.0° |
| C | CA | CB | SG | 62.7° | 58.9° |
| C | CA | CB | HB2 | 62.6° | 178.9° |
| C | CA | CB | HB3 | 172.1° | 61.1° |
| CA | C | OXT | HXT | 180.0° | 180.0° |
| CB | CA | C | O | 107.7° | 90.0° |
| CB | CA | C | OXT | 71.6° | 90.0° |
| CA | CB | SG | HB2 | 125.3° | 120.1° |
| CA | CB | SG | HB3 | 125.2° | 119.9° |
| CA | CB | HB2 | HB3 | 117.2° | 119.9° |
| CA | CB | SG | SD | 174.7° | 65.9° |
| HA | CA | C | O | 132.1° | 149.9° |
| HA | CA | C | OXT | 48.6° | 30.1° |
| HA | CA | CB | SG | 176.7° | 61.2° |
| HA | CA | CB | HB2 | 58.0° | 58.9° |
| HA | CA | CB | HB3 | 51.5° | 178.8° |
| O | C | OXT | HXT | 0.7° | 0.0° |
| SG | CB | HB2 | HB3 | 117.2° | 120.0° |
| CB | SG | SD | C1 | 95.0° | 90.0° |
| HB2 | CB | SG | SD | 60.0° | 54.2° |
| HB3 | CB | SG | SD | 49.5° | 174.2° |
| SG | SD | C1 | C2 | 70.7° | 180.0° |
| SG | SD | C1 | C5 | 43.5° | 62.8° |
| SG | SD | C1 | H1 | 167.4° | 58.6° |
| SD | C1 | C2 | C5 | 119.8° | 119.4° |
| SD | C1 | C2 | H1 | 116.6° | 121.4° |
| SD | C1 | C5 | H1 | 116.5° | 121.4° |
| SD | C1 | C2 | C3 | 90.3° | 119.3° |
| SD | C1 | C2 | H21 | 144.4° | 121.4° |
| SD | C1 | C2 | H22 | 34.9° | 0.1° |
| SD | C1 | C5 | C4 | 96.2° | 143.0° |
| SD | C1 | C5 | H51 | 29.1° | 24.2° |
| SD | C1 | C5 | H52 | 138.6° | 98.4° |
| C2 | C1 | C5 | H1 | 121.5° | 119.2° |
| C1 | C2 | C3 | H21 | 125.3° | 119.3° |
| C1 | C2 | C3 | H22 | 125.3° | 119.3° |
| C1 | C2 | H21 | H22 | 118.1° | 121.5° |
| C1 | C2 | C3 | C4 | 21.9° | 23.6° |
| C1 | C2 | C3 | H31 | 147.1° | 142.3° |
| C1 | C2 | C3 | H32 | 103.5° | 95.0° |
| C2 | C1 | C5 | C4 | 25.8° | 23.6° |
| C2 | C1 | C5 | H51 | 151.0° | 95.2° |
| C2 | C1 | C5 | H52 | 99.4° | 142.3° |
| C5 | C1 | C2 | C3 | 29.4° | 0.0° |
| C5 | C1 | C2 | H21 | 95.8° | 119.2° |
| C5 | C1 | C2 | H22 | 154.7° | 119.3° |
| C1 | C5 | C4 | C3 | 13.5° | 38.0° |
| C1 | C5 | C4 | H51 | 125.3° | 118.7° |
| C1 | C5 | C4 | H52 | 125.2° | 118.6° |
| C1 | C5 | C4 | H41 | 138.8° | 80.4° |
| C1 | C5 | C4 | H42 | 111.7° | 156.2° |
| C1 | C5 | H51 | H52 | 118.3° | 122.6° |
| H1 | C1 | C2 | C3 | 153.1° | 119.3° |
| H1 | C1 | C2 | H21 | 27.8° | 0.1° |
| H1 | C1 | C2 | H22 | 81.6° | 121.4° |
| H1 | C1 | C5 | C4 | 147.3° | 95.6° |
| H1 | C1 | C5 | H51 | 87.4° | 145.6° |
| H1 | C1 | C5 | H52 | 22.1° | 23.0° |
| C3 | C2 | H21 | H22 | 118.0° | 121.3° |
| C2 | C3 | C4 | H31 | 125.2° | 118.7° |
| C2 | C3 | C4 | H32 | 125.3° | 118.6° |
| C2 | C3 | H31 | H32 | 119.9° | 122.6° |
| C2 | C3 | C4 | C5 | 4.9° | 38.0° |
| C2 | C3 | C4 | H41 | 120.3° | 80.4° |
| C2 | C3 | C4 | H42 | 130.2° | 156.2° |
| H21 | C2 | C3 | C4 | 103.4° | 95.7° |
| H21 | C2 | C3 | H31 | 21.9° | 23.0° |
| H21 | C2 | C3 | H32 | 131.3° | 145.6° |
| H22 | C2 | C3 | C4 | 147.2° | 142.9° |
| H22 | C2 | C3 | H31 | 87.5° | 98.4° |
| H22 | C2 | C3 | H32 | 21.9° | 24.3° |
| C4 | C3 | H31 | H32 | 119.9° | 122.7° |
| C3 | C4 | C5 | H41 | 125.2° | 118.3° |
| C3 | C4 | C5 | H42 | 125.3° | 118.3° |
| C3 | C4 | H41 | H42 | 119.2° | 123.3° |
| C3 | C4 | C5 | H51 | 138.8° | 80.7° |
| C3 | C4 | C5 | H52 | 111.7° | 156.6° |
| H31 | C3 | C4 | C5 | 130.2° | 156.7° |
| H31 | C3 | C4 | H41 | 4.9° | 38.3° |
| H31 | C3 | C4 | H42 | 104.5° | 85.1° |
| H32 | C3 | C4 | C5 | 120.4° | 80.7° |
| H32 | C3 | C4 | H41 | 114.4° | 161.0° |
| H32 | C3 | C4 | H42 | 4.9° | 37.6° |
| C5 | C4 | H41 | H42 | 119.2° | 123.3° |
| C4 | C5 | H51 | H52 | 118.3° | 122.6° |
| H41 | C4 | C5 | H51 | 96.0° | 160.9° |
| H41 | C4 | C5 | H52 | 13.6° | 38.3° |
| H42 | C4 | C5 | H51 | 13.5° | 37.5° |
| H42 | C4 | C5 | H52 | 123.1° | 85.1° |
