C5A
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| N | CA | sing | 1.45Å | 1.49Å | |
| CA | C | sing | 1.50Å | 1.53Å | |
| CA | CB1 | sing | 1.53Å | 1.52Å | |
| CA | CB2 | sing | 1.53Å | 1.52Å | |
| C | O | doub | 1.22Å | 1.24Å | |
| C | OXT | sing | 1.35Å | 1.24Å | |
| CB1 | CD | sing | 1.54Å | 1.52Å | |
| CB2 | CG2 | sing | 1.53Å | 1.58Å | |
| CG2 | CD | sing | 1.53Å | 1.54Å | |
| CD | CE | sing | 1.50Å | 1.53Å | |
| CE | OZ1 | doub | 1.22Å | 1.25Å | |
| CE | OZ2 | sing | 1.36Å | 1.25Å | |
| N | HN1 | sing | 1.00Å | 1.00Å | |
| N | HN2 | sing | 1.00Å | 1.00Å | |
| OXT | HOXT | sing | 0.98Å | 0.95Å | |
| CB1 | HB11 | sing | 1.10Å | 1.10Å | |
| CB1 | HB12 | sing | 1.10Å | 1.10Å | |
| CB2 | HB21 | sing | 1.10Å | 1.10Å | |
| CB2 | HB22 | sing | 1.10Å | 1.10Å | |
| CG2 | HG21 | sing | 1.10Å | 1.10Å | |
| CG2 | HG22 | sing | 1.10Å | 1.10Å | |
| CD | HD | sing | 1.10Å | 1.10Å | |
| OZ2 | HOZ2 | sing | 0.98Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| N | CA | C | 113.1° | 105.3° |
| N | CA | CB1 | 105.6° | 112.6° |
| N | CA | CB2 | 106.6° | 113.1° |
| CA | N | HN1 | 109.5° | 118.4° |
| CA | N | HN2 | 109.5° | 118.3° |
| C | CA | CB1 | 112.5° | 111.3° |
| C | CA | CB2 | 111.3° | 111.5° |
| CA | C | O | 119.4° | 125.1° |
| CA | C | OXT | 119.8° | 110.7° |
| CB1 | CA | CB2 | 107.2° | 103.3° |
| CA | CB1 | CD | 101.7° | 105.1° |
| CA | CB1 | HB11 | 112.1° | 112.6° |
| CA | CB1 | HB12 | 113.7° | 110.2° |
| CA | CB2 | CG2 | 104.6° | 103.9° |
| CA | CB2 | HB21 | 111.1° | 110.9° |
| CA | CB2 | HB22 | 112.1° | 113.4° |
| O | C | OXT | 120.8° | 124.2° |
| C | OXT | HOXT | 109.5° | 112.0° |
| CB1 | CD | CG2 | 104.5° | 106.5° |
| CB1 | CD | CE | 112.2° | 110.6° |
| CD | CB1 | HB11 | 112.2° | 112.9° |
| CD | CB1 | HB12 | 113.8° | 108.4° |
| CB1 | CD | HD | 111.7° | 110.4° |
| CB2 | CG2 | CD | 104.8° | 105.8° |
| CG2 | CB2 | HB21 | 111.1° | 109.3° |
| CG2 | CB2 | HB22 | 112.2° | 111.3° |
| CB2 | CG2 | HG21 | 111.1° | 110.2° |
| CB2 | CG2 | HG22 | 112.1° | 110.8° |
| CG2 | CD | CE | 111.5° | 111.1° |
| CD | CG2 | HG21 | 111.1° | 111.6° |
| CD | CG2 | HG22 | 112.1° | 111.5° |
| CG2 | CD | HD | 112.4° | 111.2° |
| CD | CE | OZ1 | 119.3° | 125.1° |
| CD | CE | OZ2 | 120.1° | 110.7° |
| CE | CD | HD | 104.7° | 107.0° |
| OZ1 | CE | OZ2 | 120.6° | 124.3° |
| CE | OZ2 | HOZ2 | 109.5° | 111.9° |
| HN1 | N | HN2 | 109.5° | 121.9° |
| HB11 | CB1 | HB12 | 103.7° | 107.6° |
| HB21 | CB2 | HB22 | 105.8° | 108.0° |
| HG21 | CG2 | HG22 | 105.9° | 107.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| N | CA | C | CB1 | 119.6° | 122.3° |
| N | CA | C | CB2 | 120.1° | 123.0° |
| N | CA | CB1 | CB2 | 113.4° | 122.3° |
| N | CA | C | O | 21.2° | 122.9° |
| N | CA | C | OXT | 158.3° | 56.9° |
| N | CA | CB1 | CD | 75.9° | 156.1° |
| N | CA | CB2 | CG2 | 93.7° | 161.6° |
| CA | N | HN1 | HN2 | 120.0° | 166.1° |
| N | CA | CB1 | HB11 | 44.1° | 80.6° |
| N | CA | CB1 | HB12 | 161.4° | 39.5° |
| N | CA | CB2 | HB21 | 146.3° | 44.3° |
| N | CA | CB2 | HB22 | 28.1° | 77.4° |
| C | CA | CB1 | CB2 | 122.7° | 119.7° |
| CA | C | O | OXT | 179.4° | 179.8° |
| C | CA | CB1 | CD | 160.2° | 85.9° |
| C | CA | CB2 | CG2 | 142.5° | 80.0° |
| C | CA | N | HN1 | 149.7° | 168.6° |
| C | CA | N | HN2 | 29.7° | 2.0° |
| CA | C | OXT | HOXT | 179.5° | 179.8° |
| C | CA | CB1 | HB11 | 79.8° | 37.4° |
| C | CA | CB1 | HB12 | 37.5° | 157.5° |
| C | CA | CB2 | HB21 | 22.5° | 162.7° |
| C | CA | CB2 | HB22 | 95.7° | 41.0° |
| CB1 | CA | C | O | 98.4° | 114.8° |
| CB1 | CA | C | OXT | 82.1° | 65.4° |
| CA | CB1 | CD | HB11 | 120.0° | 123.1° |
| CA | CB1 | CD | HB12 | 122.7° | 117.8° |
| CB1 | CA | CB2 | CG2 | 19.0° | 39.5° |
| CA | CB1 | CD | CG2 | 41.3° | 15.3° |
| CA | CB1 | CD | CE | 162.3° | 105.6° |
| CB1 | CA | N | HN1 | 86.7° | 47.2° |
| CB1 | CA | N | HN2 | 153.2° | 119.4° |
| CA | CB1 | HB11 | HB12 | 123.1° | 121.6° |
| CB1 | CA | CB2 | HB21 | 101.0° | 77.8° |
| CB1 | CA | CB2 | HB22 | 140.9° | 160.6° |
| CA | CB1 | CD | HD | 80.5° | 136.2° |
| CB2 | CA | C | O | 141.2° | 0.1° |
| CB2 | CA | C | OXT | 38.2° | 179.9° |
| CB2 | CA | CB1 | CD | 37.5° | 33.8° |
| CA | CB2 | CG2 | HB21 | 120.0° | 118.4° |
| CA | CB2 | CG2 | HB22 | 121.8° | 122.4° |
| CA | CB2 | CG2 | CD | 6.8° | 30.1° |
| CB2 | CA | N | HN1 | 27.0° | 69.4° |
| CB2 | CA | N | HN2 | 93.0° | 123.9° |
| CB2 | CA | CB1 | HB11 | 157.5° | 157.1° |
| CB2 | CA | CB1 | HB12 | 85.2° | 82.8° |
| CA | CB2 | HB21 | HB22 | 121.9° | 124.8° |
| CA | CB2 | CG2 | HG21 | 113.2° | 90.6° |
| CA | CB2 | CG2 | HG22 | 128.5° | 151.1° |
| O | C | OXT | HOXT | 0.0° | 0.0° |
| CB1 | CD | CG2 | CB2 | 29.9° | 9.1° |
| CB1 | CD | CG2 | CE | 121.5° | 120.6° |
| CB1 | CD | CG2 | HD | 121.3° | 120.4° |
| CB1 | CD | CE | HD | 121.4° | 120.3° |
| CB1 | CD | CE | OZ1 | 146.6° | 29.7° |
| CB1 | CD | CE | OZ2 | 33.0° | 150.2° |
| CD | CB1 | HB11 | HB12 | 123.2° | 119.5° |
| CB1 | CD | CG2 | HG21 | 90.1° | 110.7° |
| CB1 | CD | CG2 | HG22 | 151.7° | 129.6° |
| CB2 | CG2 | CD | HG21 | 120.0° | 119.9° |
| CB2 | CG2 | CD | HG22 | 121.8° | 120.5° |
| CB2 | CG2 | CD | CE | 151.4° | 129.7° |
| CG2 | CB2 | HB21 | HB22 | 122.0° | 121.2° |
| CB2 | CG2 | HG21 | HG22 | 121.9° | 120.6° |
| CB2 | CG2 | CD | HD | 91.4° | 111.3° |
| CG2 | CD | CE | HD | 121.8° | 121.5° |
| CG2 | CD | CE | OZ1 | 96.5° | 88.4° |
| CG2 | CD | CE | OZ2 | 83.8° | 91.6° |
| CG2 | CD | CB1 | HB11 | 161.3° | 138.4° |
| CG2 | CD | CB1 | HB12 | 81.4° | 102.5° |
| CD | CG2 | CB2 | HB21 | 126.8° | 88.3° |
| CD | CG2 | CB2 | HB22 | 115.0° | 152.6° |
| CD | CG2 | HG21 | HG22 | 121.9° | 122.2° |
| CD | CE | OZ1 | OZ2 | 179.6° | 179.9° |
| CE | CD | CB1 | HB11 | 77.7° | 17.5° |
| CE | CD | CB1 | HB12 | 39.6° | 136.5° |
| CE | CD | CG2 | HG21 | 31.4° | 9.8° |
| CE | CD | CG2 | HG22 | 86.9° | 109.8° |
| CD | CE | OZ2 | HOZ2 | 179.6° | 179.8° |
| OZ1 | CE | CD | HD | 25.3° | 150.0° |
| OZ1 | CE | OZ2 | HOZ2 | 0.0° | 0.1° |
| OZ2 | CE | CD | HD | 154.4° | 29.9° |
| HB11 | CB1 | CD | HD | 39.5° | 100.7° |
| HB12 | CB1 | CD | HD | 156.8° | 18.3° |
| HB21 | CB2 | CG2 | HG21 | 6.8° | 151.0° |
| HB21 | CB2 | CG2 | HG22 | 111.5° | 32.7° |
| HB22 | CB2 | CG2 | HG21 | 125.0° | 31.8° |
| HB22 | CB2 | CG2 | HG22 | 6.7° | 86.5° |
| HG21 | CG2 | CD | HD | 148.6° | 128.9° |
| HG22 | CG2 | CD | HD | 30.3° | 9.2° |
