C3Y
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O2 | H5 | sing | 0.97Å | 0.95Å | |
| N | CA | sing | 1.44Å | 1.47Å | |
| CA | C | sing | 1.52Å | 1.52Å | |
| C | O | doub | 1.23Å | 1.24Å | |
| CA | CB | sing | 1.53Å | 1.50Å | |
| CB | SG | sing | 1.81Å | 1.81Å | |
| N1 | O3 | sing | 1.45Å | 1.45Å | |
| SG | C2 | sing | 1.85Å | 1.81Å | |
| C1 | C2 | sing | 1.53Å | 1.47Å | |
| O2 | C2 | sing | 1.43Å | 1.41Å | |
| N1 | C2 | sing | 1.47Å | 1.38Å | |
| C | OXT | sing | 1.35Å | 1.32Å | |
| N | HN1 | sing | 1.01Å | 1.00Å | |
| N | HN2 | sing | 1.01Å | 1.00Å | |
| CA | HA | sing | 1.10Å | 1.10Å | |
| CB | HBC1 | sing | 1.10Å | 1.10Å | |
| CB | HBC2 | sing | 1.10Å | 1.10Å | |
| OXT | HOT | sing | 0.98Å | 0.95Å | |
| C1 | H1C1 | sing | 1.10Å | 1.10Å | |
| C1 | H1C2 | sing | 1.10Å | 1.10Å | |
| C1 | H1C3 | sing | 1.10Å | 1.10Å | |
| N1 | H1 | sing | 1.02Å | 1.00Å | |
| O3 | H3 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| H5 | O2 | C2 | 109.5° | 106.5° |
| N | CA | C | 112.4° | 111.9° |
| N | CA | CB | 110.3° | 112.0° |
| CA | N | HN1 | 109.5° | 119.0° |
| CA | N | HN2 | 109.5° | 119.0° |
| N | CA | HA | 109.5° | 105.2° |
| CA | C | O | 118.2° | 123.7° |
| C | CA | CB | 116.2° | 112.4° |
| CA | C | OXT | 119.2° | 113.3° |
| C | CA | HA | 102.6° | 106.1° |
| O | C | OXT | 122.5° | 123.0° |
| CA | CB | SG | 114.6° | 113.8° |
| CB | CA | HA | 105.1° | 108.8° |
| CA | CB | HBC1 | 107.8° | 109.8° |
| CA | CB | HBC2 | 106.6° | 110.4° |
| CB | SG | C2 | 104.6° | 100.9° |
| SG | CB | HBC1 | 107.8° | 107.3° |
| SG | CB | HBC2 | 106.6° | 107.6° |
| O3 | N1 | C2 | 116.0° | 106.8° |
| O3 | N1 | H1 | 107.3° | 100.9° |
| N1 | O3 | H3 | 109.5° | 99.4° |
| SG | C2 | C1 | 110.8° | 109.4° |
| SG | C2 | O2 | 119.3° | 110.1° |
| SG | C2 | N1 | 117.3° | 107.6° |
| C1 | C2 | O2 | 103.5° | 108.1° |
| C1 | C2 | N1 | 108.3° | 109.9° |
| C2 | C1 | H1C1 | 109.5° | 111.7° |
| C2 | C1 | H1C2 | 109.5° | 111.0° |
| C2 | C1 | H1C3 | 109.4° | 112.3° |
| O2 | C2 | N1 | 95.9° | 111.6° |
| C2 | N1 | H1 | 107.4° | 109.2° |
| C | OXT | HOT | 109.5° | 111.9° |
| HN1 | N | HN2 | 109.4° | 120.6° |
| HBC1 | CB | HBC2 | 113.6° | 107.7° |
| H1C1 | C1 | H1C2 | 109.5° | 104.9° |
| H1C1 | C1 | H1C3 | 109.5° | 108.8° |
| H1C2 | C1 | H1C3 | 109.5° | 107.8° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| H5 | O2 | C2 | SG | 76.4° | 58.3° |
| H5 | O2 | C2 | C1 | 47.2° | 177.9° |
| H5 | O2 | C2 | N1 | 157.7° | 61.1° |
| N | CA | C | CB | 128.4° | 127.0° |
| N | CA | C | HA | 117.6° | 114.3° |
| N | CA | C | O | 71.4° | 5.7° |
| N | CA | CB | HA | 118.0° | 115.9° |
| N | CA | CB | SG | 159.1° | 67.2° |
| N | CA | C | OXT | 111.8° | 175.0° |
| CA | N | HN1 | HN2 | 120.0° | 166.3° |
| N | CA | CB | HBC1 | 39.1° | 53.0° |
| N | CA | CB | HBC2 | 83.2° | 171.6° |
| CA | C | O | OXT | 176.7° | 179.2° |
| C | CA | CB | HA | 112.6° | 117.2° |
| C | CA | CB | SG | 71.5° | 59.7° |
| C | CA | N | HN1 | 38.3° | 37.4° |
| C | CA | N | HN2 | 81.6° | 156.1° |
| C | CA | CB | HBC1 | 168.5° | 180.0° |
| C | CA | CB | HBC2 | 46.2° | 61.5° |
| CA | C | OXT | HOT | 176.7° | 179.3° |
| O | C | CA | CB | 160.2° | 121.2° |
| O | C | CA | HA | 46.1° | 120.0° |
| O | C | OXT | HOT | 0.0° | 0.1° |
| CA | CB | SG | HBC1 | 120.0° | 121.7° |
| CA | CB | SG | HBC2 | 117.7° | 122.7° |
| CA | CB | SG | C2 | 117.2° | 180.0° |
| CB | CA | C | OXT | 16.6° | 58.0° |
| CB | CA | N | HN1 | 169.8° | 164.6° |
| CB | CA | N | HN2 | 49.8° | 28.9° |
| CA | CB | HBC1 | HBC2 | 117.9° | 120.3° |
| CB | SG | C2 | C1 | 127.6° | 60.0° |
| CB | SG | C2 | O2 | 7.6° | 58.8° |
| CB | SG | C2 | N1 | 107.3° | 179.4° |
| SG | CB | CA | HA | 41.1° | 176.9° |
| SG | CB | HBC1 | HBC2 | 117.9° | 115.6° |
| O3 | N1 | C2 | SG | 71.0° | 169.3° |
| O3 | N1 | C2 | C1 | 162.8° | 71.6° |
| O3 | N1 | C2 | O2 | 56.4° | 48.4° |
| O3 | N1 | C2 | H1 | 120.0° | 108.4° |
| SG | C2 | C1 | O2 | 129.0° | 120.0° |
| SG | C2 | C1 | N1 | 130.0° | 117.9° |
| SG | C2 | O2 | N1 | 125.9° | 119.4° |
| C2 | SG | CB | HBC1 | 122.7° | 58.3° |
| C2 | SG | CB | HBC2 | 0.5° | 57.3° |
| SG | C2 | C1 | H1C1 | 100.7° | 64.2° |
| SG | C2 | C1 | H1C2 | 139.3° | 179.1° |
| SG | C2 | C1 | H1C3 | 19.3° | 58.3° |
| SG | C2 | N1 | H1 | 49.0° | 60.9° |
| C1 | C2 | O2 | N1 | 110.5° | 121.0° |
| C2 | C1 | H1C1 | H1C2 | 120.0° | 120.3° |
| C2 | C1 | H1C1 | H1C3 | 120.0° | 124.5° |
| C2 | C1 | H1C2 | H1C3 | 120.0° | 123.4° |
| C1 | C2 | N1 | H1 | 77.2° | 180.0° |
| O2 | C2 | C1 | H1C1 | 130.4° | 55.8° |
| O2 | C2 | C1 | H1C2 | 10.3° | 60.9° |
| O2 | C2 | C1 | H1C3 | 109.7° | 178.3° |
| O2 | C2 | N1 | H1 | 176.4° | 60.0° |
| N1 | C2 | C1 | H1C1 | 29.3° | 177.8° |
| N1 | C2 | C1 | H1C2 | 90.7° | 61.2° |
| N1 | C2 | C1 | H1C3 | 149.3° | 59.6° |
| C2 | N1 | O3 | H3 | 22.7° | 130.0° |
| OXT | C | CA | HA | 130.6° | 60.7° |
| HN1 | N | CA | HA | 75.1° | 77.4° |
| HN2 | N | CA | HA | 165.0° | 89.1° |
| HA | CA | CB | HBC1 | 78.9° | 62.8° |
| HA | CA | CB | HBC2 | 158.8° | 55.7° |
| H1C1 | C1 | H1C2 | H1C3 | 120.0° | 115.8° |
| H1 | N1 | O3 | H3 | 142.7° | 115.9° |
