C38

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O3P	P	sing	1.61Å	1.50Å
O3P	H3P	sing	0.97Å	0.95Å
P	O1P	doub	1.48Å	1.49Å
P	O2P	sing	1.61Å	1.60Å
P	O5'	sing	1.61Å	1.59Å
O2P	H2P	sing	0.97Å	0.95Å
O5'	C5'	sing	1.43Å	1.40Å
C5'	C4'	sing	1.53Å	1.51Å
C5'	H5'1	sing	1.09Å	1.12Å
C5'	H5'2	sing	1.09Å	1.12Å
C4'	O4'	sing	1.45Å	1.45Å
C4'	C3'	sing	1.55Å	1.52Å
C4'	H4'	sing	1.09Å	1.12Å
O4'	C1'	sing	1.44Å	1.40Å
C3'	O3'	sing	1.43Å	1.41Å
C3'	C2'	sing	1.55Å	1.52Å
C3'	H3'	sing	1.09Å	1.12Å
O3'	HA	sing	0.97Å	0.95Å
C2'	C1'	sing	1.54Å	1.51Å
C2'	H2'1	sing	1.09Å	1.12Å
C2'	H2'2	sing	1.09Å	1.12Å
C1'	N1	sing	1.46Å	1.48Å
C1'	H1'	sing	1.09Å	1.12Å
N1	C2	sing	1.35Å	1.41Å
N1	C6	sing	1.36Å	1.38Å
C2	O2	doub	1.22Å	1.25Å
C2	N3	sing	1.33Å	1.34Å
N3	C4	doub	1.33Å	1.34Å
C4	N4	sing	1.38Å	1.35Å
C4	C5	sing	1.41Å	1.46Å
N4	H4N1	sing	0.97Å	1.02Å
N4	H4N2	sing	0.97Å	1.02Å
C5	C6	doub	1.35Å	1.35Å
C5	I	sing	2.09Å	1.51Å
C6	H6	sing	1.08Å	1.10Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
P	O3P	H3P	121.0°	106.8°
O3P	P	O1P	121.0°	109.5°
O3P	P	O2P	111.3°	109.5°
O3P	P	O5'	107.5°	109.5°
O1P	P	O2P	101.6°	109.5°
O1P	P	O5'	109.8°	109.5°
O2P	P	O5'	104.4°	109.5°
P	O2P	H2P	111.2°	106.8°
P	O5'	C5'	119.7°	106.8°
O5'	C5'	C4'	110.0°	109.5°
O5'	C5'	H5'1	112.1°	109.4°
O5'	C5'	H5'2	112.0°	109.4°
C4'	C5'	H5'1	112.0°	109.5°
C4'	C5'	H5'2	112.0°	109.5°
C5'	C4'	O4'	111.7°	110.8°
C5'	C4'	C3'	114.7°	110.7°
C5'	C4'	H4'	108.2°	110.6°
H5'1	C5'	H5'2	98.3°	109.5°
O4'	C4'	C3'	105.7°	103.6°
O4'	C4'	H4'	108.1°	110.5°
C4'	O4'	C1'	108.0°	106.9°
C3'	C4'	H4'	108.2°	110.6°
C4'	C3'	O3'	107.9°	111.0°
C4'	C3'	C2'	104.2°	102.1°
C4'	C3'	H3'	112.1°	110.9°
O4'	C1'	C2'	103.2°	107.4°
O4'	C1'	N1	108.6°	109.9°
O4'	C1'	H1'	110.2°	109.9°
O3'	C3'	C2'	108.0°	110.9°
O3'	C3'	H3'	112.1°	110.7°
C3'	O3'	HA	108.0°	106.9°
C2'	C3'	H3'	112.1°	110.9°
C3'	C2'	C1'	101.9°	104.2°
C3'	C2'	H2'1	115.1°	110.5°
C3'	C2'	H2'2	115.1°	110.6°
C1'	C2'	H2'1	115.1°	110.5°
C1'	C2'	H2'2	115.1°	110.4°
C2'	C1'	N1	114.2°	109.9°
C2'	C1'	H1'	110.2°	109.8°
H2'1	C2'	H2'2	95.4°	110.5°
N1	C1'	H1'	110.2°	109.8°
C1'	N1	C2	118.1°	119.8°
C1'	N1	C6	121.5°	119.9°
C2	N1	C6	120.3°	120.3°
N1	C2	O2	119.5°	119.4°
N1	C2	N3	119.5°	121.1°
N1	C6	C5	121.4°	119.3°
N1	C6	H6	120.3°	120.3°
O2	C2	N3	121.1°	119.4°
C2	N3	C4	120.6°	120.7°
N3	C4	N4	115.6°	120.2°
N3	C4	C5	121.8°	119.6°
N4	C4	C5	122.6°	120.2°
C4	N4	H4N1	115.6°	120.0°
C4	N4	H4N2	122.6°	120.0°
C4	C5	C6	116.3°	118.9°
C4	C5	I	121.1°	120.5°
H4N1	N4	H4N2	121.8°	120.0°
C6	C5	I	122.6°	120.6°
C5	C6	H6	118.2°	120.3°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O3P	P	O1P	O2P	123.8°	120.0°
O3P	P	O1P	O5'	126.1°	120.0°
O3P	P	O2P	O5'	115.6°	120.0°
O3P	P	O2P	H2P	179.9°	60.0°
O3P	P	O5'	C5'	164.6°	180.0°
H3P	O3P	P	O1P	180.0°	60.0°
H3P	O3P	P	O2P	60.8°	60.0°
H3P	O3P	P	O5'	52.9°	180.0°
O1P	P	O2P	O5'	114.2°	120.0°
O1P	P	O2P	H2P	49.9°	180.0°
O1P	P	O5'	C5'	61.9°	60.0°
O2P	P	O5'	C5'	46.4°	60.0°
O5'	P	O2P	H2P	64.3°	60.0°
P	O5'	C5'	C4'	147.6°	180.0°
P	O5'	C5'	H5'1	22.4°	60.0°
P	O5'	C5'	H5'2	87.1°	60.0°
O5'	C5'	C4'	H5'1	125.3°	120.0°
O5'	C5'	C4'	H5'2	125.3°	120.0°
O5'	C5'	H5'1	H5'2	117.9°	119.9°
O5'	C5'	C4'	O4'	79.8°	65.8°
O5'	C5'	C4'	C3'	40.5°	180.0°
O5'	C5'	C4'	H4'	161.3°	57.1°
C4'	C5'	H5'1	H5'2	117.9°	120.1°
C5'	C4'	O4'	C3'	125.4°	118.7°
C5'	C4'	O4'	H4'	118.9°	122.9°
C5'	C4'	C3'	H4'	120.8°	122.9°
C5'	C4'	O4'	C1'	146.0°	158.5°
C5'	C4'	C3'	O3'	127.7°	86.1°
C5'	C4'	C3'	C2'	117.7°	155.6°
C5'	C4'	C3'	H3'	3.7°	37.4°
H5'1	C5'	C4'	O4'	45.6°	174.3°
H5'1	C5'	C4'	C3'	165.8°	60.0°
H5'1	C5'	C4'	H4'	73.4°	62.9°
H5'2	C5'	C4'	O4'	155.0°	54.2°
H5'2	C5'	C4'	C3'	84.8°	60.0°
H5'2	C5'	C4'	H4'	36.1°	177.1°
O4'	C4'	C3'	H4'	115.6°	118.4°
O4'	C4'	C3'	O3'	108.8°	155.2°
O4'	C4'	C3'	C2'	5.9°	36.9°
O4'	C4'	C3'	H3'	127.3°	81.3°
C4'	O4'	C1'	C2'	38.6°	26.3°
C4'	O4'	C1'	N1	160.1°	145.9°
C4'	O4'	C1'	H1'	79.1°	93.1°
C3'	C4'	O4'	C1'	20.6°	39.8°
C4'	C3'	O3'	C2'	112.1°	112.8°
C4'	C3'	O3'	H3'	123.9°	123.6°
C4'	C3'	C2'	H3'	121.4°	118.2°
C4'	C3'	O3'	HA	180.0°	174.2°
C4'	C3'	C2'	C1'	27.6°	20.9°
C4'	C3'	C2'	H2'1	152.9°	97.9°
C4'	C3'	C2'	H2'2	97.6°	139.5°
H4'	C4'	O4'	C1'	95.0°	78.6°
H4'	C4'	C3'	O3'	6.9°	36.8°
H4'	C4'	C3'	C2'	121.5°	81.5°
H4'	C4'	C3'	H3'	117.1°	160.3°
O4'	C1'	C2'	C3'	40.7°	2.0°
O4'	C1'	C2'	N1	117.7°	119.6°
O4'	C1'	C2'	H1'	117.7°	119.5°
O4'	C1'	C2'	H2'1	165.9°	120.6°
O4'	C1'	C2'	H2'2	84.6°	116.8°
O4'	C1'	N1	H1'	120.8°	121.1°
O4'	C1'	N1	C2	111.7°	58.3°
O4'	C1'	N1	C6	70.5°	121.8°
O3'	C3'	C2'	H3'	124.0°	123.5°
O3'	C3'	C2'	C1'	87.0°	139.2°
O3'	C3'	C2'	H2'1	38.3°	20.5°
O3'	C3'	C2'	H2'2	147.8°	102.1°
C2'	C3'	O3'	HA	67.9°	61.4°
C3'	C2'	C1'	H2'1	125.3°	118.7°
C3'	C2'	C1'	H2'2	125.3°	118.8°
C3'	C2'	H2'1	H2'2	121.0°	122.7°
C3'	C2'	C1'	N1	158.3°	121.5°
C3'	C2'	C1'	H1'	77.0°	117.6°
H3'	C3'	O3'	HA	56.1°	62.2°
H3'	C3'	C2'	C1'	149.0°	97.3°
H3'	C3'	C2'	H2'1	85.7°	144.0°
H3'	C3'	C2'	H2'2	23.8°	21.3°
C1'	C2'	H2'1	H2'2	121.0°	122.5°
C2'	C1'	N1	H1'	124.7°	120.9°
C2'	C1'	N1	C2	133.8°	59.7°
C2'	C1'	N1	C6	44.0°	120.2°
H2'1	C2'	C1'	N1	76.4°	119.8°
H2'1	C2'	C1'	H1'	48.2°	1.1°
H2'2	C2'	C1'	N1	33.1°	2.8°
H2'2	C2'	C1'	H1'	157.7°	123.7°
C1'	N1	C2	C6	177.9°	179.9°
C1'	N1	C2	O2	3.7°	0.1°
C1'	N1	C2	N3	176.0°	180.0°
C1'	N1	C6	C5	175.1°	179.8°
C1'	N1	C6	H6	4.9°	0.1°
H1'	C1'	N1	C2	9.1°	179.4°
H1'	C1'	N1	C6	168.7°	0.7°
N1	C2	O2	N3	179.7°	179.9°
N1	C2	N3	C4	0.2°	0.2°
C2	N1	C6	C5	2.7°	0.3°
C2	N1	C6	H6	177.4°	180.0°
C6	N1	C2	O2	178.5°	180.0°
C6	N1	C2	N3	1.9°	0.1°
N1	C6	C5	C4	1.8°	0.6°
N1	C6	C5	H6	179.9°	179.7°
N1	C6	C5	I	178.1°	180.0°
O2	C2	N3	C4	179.9°	179.9°
C2	N3	C4	N4	179.7°	179.9°
C2	N3	C4	C5	0.6°	0.4°
N3	C4	N4	C5	179.7°	179.7°
N3	C4	N4	H4N1	180.0°	0.0°
N3	C4	N4	H4N2	0.3°	179.8°
N3	C4	C5	C6	0.2°	0.6°
N3	C4	C5	I	179.7°	179.9°
C4	N4	H4N1	H4N2	179.7°	179.8°
N4	C4	C5	C6	179.5°	179.7°
N4	C4	C5	I	0.6°	0.3°
C5	C4	N4	H4N1	0.3°	179.7°
C5	C4	N4	H4N2	180.0°	0.5°
C4	C5	C6	I	179.9°	179.5°
C4	C5	C6	H6	178.2°	179.7°
I	C5	C6	H6	1.8°	0.3°

Definition date:	1997-03-12
Last modified:	2011-06-04
Release status:	REL
Processing site:	RCSB
Derived from:	1MEY