C34
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
P | OP1 | doub | 1.48Å | 1.51Å | |
P | OP2 | sing | 1.61Å | 1.51Å | |
P | OP3 | sing | 1.61Å | 1.58Å | |
P | O5' | sing | 1.61Å | 1.60Å | |
OP2 | HOP2 | sing | 0.97Å | 0.95Å | |
OP3 | HOP3 | sing | 0.97Å | 0.95Å | |
O5' | C5' | sing | 1.43Å | 1.45Å | |
C5' | C4' | sing | 1.53Å | 1.53Å | |
C5' | H5' | sing | 1.09Å | 1.12Å | |
C5' | H5'' | sing | 1.09Å | 1.12Å | |
C4' | O4' | sing | 1.45Å | 1.41Å | |
C4' | C3' | sing | 1.55Å | 1.49Å | |
C4' | H4' | sing | 1.09Å | 1.12Å | |
O4' | C1' | sing | 1.44Å | 1.46Å | |
C1' | N1 | sing | 1.47Å | 1.49Å | |
C1' | C2' | sing | 1.54Å | 1.59Å | |
C1' | H1' | sing | 1.09Å | 1.12Å | |
N1 | C6 | sing | 1.36Å | 1.36Å | |
N1 | C2 | sing | 1.34Å | 1.40Å | |
C6 | C5 | doub | 1.35Å | 1.35Å | |
C6 | H6 | sing | 1.08Å | 1.10Å | |
C2 | O2 | doub | 1.22Å | 1.23Å | |
C2 | N3 | sing | 1.33Å | 1.35Å | |
N3 | C4 | doub | 1.33Å | 1.37Å | |
C4 | N4 | sing | 1.38Å | 1.34Å | |
C4 | C5 | sing | 1.41Å | 1.43Å | |
N4 | C7 | sing | 1.47Å | 1.47Å | |
N4 | H4 | sing | 0.97Å | 1.02Å | |
C7 | H7C1 | sing | 1.09Å | 1.12Å | |
C7 | H7C2 | sing | 1.09Å | 1.12Å | |
C7 | H7C3 | sing | 1.09Å | 1.11Å | |
C5 | H5 | sing | 1.08Å | 1.10Å | |
C2' | C3' | sing | 1.55Å | 1.53Å | |
C2' | H2' | sing | 1.09Å | 1.12Å | |
C2' | H2'' | sing | 1.09Å | 1.11Å | |
C3' | O3' | sing | 1.43Å | 1.45Å | |
C3' | H3' | sing | 1.09Å | 1.12Å | |
O3' | HO3' | sing | 0.97Å | 0.95Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
OP1 | P | OP2 | 111.3° | 109.5° |
OP1 | P | OP3 | 101.5° | 109.5° |
OP1 | P | O5' | 114.3° | 109.4° |
OP2 | P | OP3 | 114.3° | 109.4° |
OP2 | P | O5' | 109.0° | 109.5° |
P | OP2 | HOP2 | 111.4° | 106.8° |
OP3 | P | O5' | 106.3° | 109.5° |
P | OP3 | HOP3 | 101.4° | 106.8° |
P | O5' | C5' | 118.8° | 106.8° |
O5' | C5' | C4' | 104.9° | 109.5° |
O5' | C5' | H5' | 113.9° | 109.5° |
O5' | C5' | H5'' | 113.9° | 109.5° |
C4' | C5' | H5' | 113.9° | 109.5° |
C4' | C5' | H5'' | 113.9° | 109.4° |
C5' | C4' | O4' | 107.5° | 110.8° |
C5' | C4' | C3' | 116.6° | 110.6° |
C5' | C4' | H4' | 108.5° | 110.5° |
H5' | C5' | H5'' | 96.5° | 109.5° |
O4' | C4' | C3' | 107.1° | 103.6° |
O4' | C4' | H4' | 108.5° | 110.5° |
C4' | O4' | C1' | 109.4° | 106.9° |
C3' | C4' | H4' | 108.5° | 110.6° |
C4' | C3' | C2' | 104.4° | 102.1° |
C4' | C3' | O3' | 114.2° | 110.9° |
C4' | C3' | H3' | 110.9° | 110.9° |
O4' | C1' | N1 | 106.1° | 109.9° |
O4' | C1' | C2' | 99.0° | 107.4° |
O4' | C1' | H1' | 115.4° | 109.9° |
N1 | C1' | C2' | 103.8° | 109.9° |
N1 | C1' | H1' | 115.3° | 109.9° |
C1' | N1 | C6 | 121.9° | 119.8° |
C1' | N1 | C2 | 116.6° | 119.8° |
C2' | C1' | H1' | 115.4° | 109.8° |
C1' | C2' | C3' | 98.7° | 104.2° |
C1' | C2' | H2' | 116.3° | 110.6° |
C1' | C2' | H2'' | 116.3° | 110.5° |
C6 | N1 | C2 | 121.6° | 120.4° |
N1 | C6 | C5 | 120.9° | 119.3° |
N1 | C6 | H6 | 119.5° | 120.3° |
N1 | C2 | O2 | 120.4° | 119.5° |
N1 | C2 | N3 | 118.0° | 121.1° |
C5 | C6 | H6 | 119.5° | 120.4° |
C6 | C5 | C4 | 118.4° | 118.9° |
C6 | C5 | H5 | 120.8° | 120.5° |
O2 | C2 | N3 | 121.6° | 119.4° |
C2 | N3 | C4 | 121.4° | 120.7° |
N3 | C4 | N4 | 119.2° | 120.2° |
N3 | C4 | C5 | 119.7° | 119.6° |
N4 | C4 | C5 | 121.1° | 120.1° |
C4 | N4 | C7 | 121.8° | 120.0° |
C4 | N4 | H4 | 119.1° | 120.1° |
C4 | C5 | H5 | 120.8° | 120.5° |
C7 | N4 | H4 | 119.1° | 119.9° |
N4 | C7 | H7C1 | 121.8° | 109.5° |
N4 | C7 | H7C2 | 107.8° | 109.4° |
N4 | C7 | H7C3 | 107.8° | 109.5° |
H7C1 | C7 | H7C2 | 107.8° | 109.5° |
H7C1 | C7 | H7C3 | 107.8° | 109.5° |
H7C2 | C7 | H7C3 | 102.1° | 109.5° |
C3' | C2' | H2' | 116.3° | 110.5° |
C3' | C2' | H2'' | 116.4° | 110.5° |
C2' | C3' | O3' | 105.2° | 110.9° |
C2' | C3' | H3' | 110.9° | 110.9° |
H2' | C2' | H2'' | 94.1° | 110.5° |
O3' | C3' | H3' | 110.9° | 110.8° |
C3' | O3' | HO3' | 114.2° | 106.8° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
OP1 | P | OP2 | OP3 | 114.2° | 120.1° |
OP1 | P | OP2 | O5' | 127.0° | 120.0° |
OP1 | P | OP3 | O5' | 119.8° | 120.0° |
OP1 | P | OP2 | HOP2 | 180.0° | 59.9° |
OP1 | P | OP3 | HOP3 | 179.9° | 180.0° |
OP1 | P | O5' | C5' | 35.7° | 60.0° |
OP2 | P | OP3 | O5' | 120.3° | 120.0° |
OP2 | P | OP3 | HOP3 | 60.0° | 60.0° |
OP2 | P | O5' | C5' | 89.5° | 180.0° |
OP3 | P | OP2 | HOP2 | 65.8° | 60.1° |
OP3 | P | O5' | C5' | 146.8° | 60.1° |
O5' | P | OP2 | HOP2 | 53.1° | 179.9° |
O5' | P | OP3 | HOP3 | 60.3° | 60.0° |
P | O5' | C5' | C4' | 162.4° | 180.0° |
P | O5' | C5' | H5' | 72.4° | 60.0° |
P | O5' | C5' | H5'' | 37.1° | 60.0° |
O5' | C5' | C4' | H5' | 125.3° | 120.0° |
O5' | C5' | C4' | H5'' | 125.3° | 120.1° |
O5' | C5' | H5' | H5'' | 119.8° | 120.1° |
O5' | C5' | C4' | O4' | 69.6° | 65.7° |
O5' | C5' | C4' | C3' | 50.5° | 179.9° |
O5' | C5' | C4' | H4' | 173.3° | 57.1° |
C4' | C5' | H5' | H5'' | 119.8° | 119.9° |
C5' | C4' | O4' | C3' | 126.0° | 118.7° |
C5' | C4' | O4' | H4' | 117.1° | 122.8° |
C5' | C4' | C3' | H4' | 122.7° | 122.8° |
C5' | C4' | O4' | C1' | 142.0° | 158.5° |
C5' | C4' | C3' | C2' | 105.5° | 155.7° |
C5' | C4' | C3' | O3' | 140.1° | 86.1° |
C5' | C4' | C3' | H3' | 14.0° | 37.5° |
H5' | C5' | C4' | O4' | 55.7° | 174.3° |
H5' | C5' | C4' | C3' | 175.8° | 60.0° |
H5' | C5' | C4' | H4' | 61.5° | 62.9° |
H5'' | C5' | C4' | O4' | 165.1° | 54.3° |
H5'' | C5' | C4' | C3' | 74.8° | 60.0° |
H5'' | C5' | C4' | H4' | 48.0° | 177.2° |
O4' | C4' | C3' | H4' | 116.9° | 118.5° |
C4' | O4' | C1' | N1 | 145.8° | 145.8° |
C4' | O4' | C1' | C2' | 38.5° | 26.3° |
C4' | O4' | C1' | H1' | 85.3° | 93.1° |
O4' | C4' | C3' | C2' | 14.9° | 37.0° |
O4' | C4' | C3' | O3' | 99.5° | 155.2° |
O4' | C4' | C3' | H3' | 134.3° | 81.2° |
C3' | C4' | O4' | C1' | 16.0° | 39.9° |
C4' | C3' | C2' | C1' | 36.4° | 20.9° |
C4' | C3' | C2' | O3' | 120.6° | 118.2° |
C4' | C3' | C2' | H3' | 119.5° | 118.2° |
C4' | C3' | C2' | H2' | 161.6° | 97.9° |
C4' | C3' | C2' | H2'' | 88.8° | 139.5° |
C4' | C3' | O3' | H3' | 126.2° | 123.6° |
C4' | C3' | O3' | HO3' | 180.0° | 174.2° |
H4' | C4' | O4' | C1' | 100.9° | 78.6° |
H4' | C4' | C3' | C2' | 131.8° | 81.5° |
H4' | C4' | C3' | O3' | 17.4° | 36.7° |
H4' | C4' | C3' | H3' | 108.8° | 160.3° |
O4' | C1' | N1 | C2' | 103.8° | 118.0° |
O4' | C1' | N1 | H1' | 129.0° | 121.0° |
O4' | C1' | C2' | H1' | 123.7° | 119.5° |
O4' | C1' | N1 | C6 | 18.5° | 121.7° |
O4' | C1' | N1 | C2 | 162.4° | 58.3° |
O4' | C1' | C2' | C3' | 44.5° | 1.9° |
O4' | C1' | C2' | H2' | 169.7° | 120.6° |
O4' | C1' | C2' | H2'' | 80.8° | 116.7° |
N1 | C1' | C2' | H1' | 127.1° | 121.0° |
C1' | N1 | C6 | C2 | 179.1° | 180.0° |
C1' | N1 | C6 | C5 | 179.7° | 179.7° |
C1' | N1 | C6 | H6 | 0.2° | 0.0° |
C1' | N1 | C2 | O2 | 0.7° | 0.0° |
C1' | N1 | C2 | N3 | 179.2° | 180.0° |
N1 | C1' | C2' | C3' | 153.6° | 121.4° |
N1 | C1' | C2' | H2' | 81.2° | 119.8° |
N1 | C1' | C2' | H2'' | 28.3° | 2.8° |
C2' | C1' | N1 | C6 | 85.4° | 120.2° |
C2' | C1' | N1 | C2 | 93.7° | 59.7° |
C1' | C2' | C3' | H2' | 125.2° | 118.8° |
C1' | C2' | C3' | H2'' | 125.2° | 118.6° |
C1' | C2' | H2' | H2'' | 122.1° | 122.6° |
C1' | C2' | C3' | O3' | 84.2° | 139.1° |
C1' | C2' | C3' | H3' | 155.9° | 97.3° |
H1' | C1' | N1 | C6 | 147.5° | 0.7° |
H1' | C1' | N1 | C2 | 33.4° | 179.3° |
H1' | C1' | C2' | C3' | 79.3° | 117.5° |
H1' | C1' | C2' | H2' | 46.0° | 1.2° |
H1' | C1' | C2' | H2'' | 155.5° | 123.8° |
N1 | C6 | C5 | H6 | 180.0° | 179.7° |
C6 | N1 | C2 | O2 | 179.9° | 180.0° |
C6 | N1 | C2 | N3 | 0.0° | 0.0° |
N1 | C6 | C5 | C4 | 0.4° | 0.5° |
N1 | C6 | C5 | H5 | 179.6° | 180.0° |
C2 | N1 | C6 | C5 | 0.7° | 0.3° |
C2 | N1 | C6 | H6 | 179.3° | 180.0° |
N1 | C2 | O2 | N3 | 179.9° | 180.0° |
N1 | C2 | N3 | C4 | 0.8° | 0.0° |
C6 | C5 | C4 | N3 | 0.5° | 0.5° |
C6 | C5 | C4 | N4 | 179.5° | 179.8° |
C6 | C5 | C4 | H5 | 180.0° | 179.5° |
H6 | C6 | C5 | C4 | 179.6° | 179.7° |
H6 | C6 | C5 | H5 | 0.4° | 0.3° |
O2 | C2 | N3 | C4 | 179.3° | 180.0° |
C2 | N3 | C4 | N4 | 179.8° | 179.9° |
C2 | N3 | C4 | C5 | 1.1° | 0.3° |
N3 | C4 | N4 | C5 | 179.1° | 179.7° |
N3 | C4 | N4 | C7 | 173.7° | 0.1° |
N3 | C4 | N4 | H4 | 6.3° | 180.0° |
N3 | C4 | C5 | H5 | 179.5° | 180.0° |
C4 | N4 | C7 | H4 | 180.0° | 180.0° |
C4 | N4 | C7 | H7C1 | 180.0° | 180.0° |
C4 | N4 | C7 | H7C2 | 54.7° | 60.0° |
C4 | N4 | C7 | H7C3 | 54.8° | 60.0° |
N4 | C4 | C5 | H5 | 0.5° | 0.3° |
C5 | C4 | N4 | C7 | 7.2° | 179.7° |
C5 | C4 | N4 | H4 | 172.8° | 0.3° |
N4 | C7 | H7C1 | H7C2 | 125.3° | 120.0° |
N4 | C7 | H7C1 | H7C3 | 125.2° | 120.0° |
N4 | C7 | H7C2 | H7C3 | 113.4° | 120.0° |
H4 | N4 | C7 | H7C1 | 0.0° | 0.0° |
H4 | N4 | C7 | H7C2 | 125.3° | 120.0° |
H4 | N4 | C7 | H7C3 | 125.2° | 120.0° |
H7C1 | C7 | H7C2 | H7C3 | 113.4° | 120.0° |
C3' | C2' | H2' | H2'' | 122.2° | 122.5° |
C2' | C3' | O3' | H3' | 119.9° | 123.7° |
C2' | C3' | O3' | HO3' | 66.1° | 61.4° |
H2' | C2' | C3' | O3' | 41.0° | 20.4° |
H2' | C2' | C3' | H3' | 78.9° | 144.0° |
H2'' | C2' | C3' | O3' | 150.6° | 102.2° |
H2'' | C2' | C3' | H3' | 30.6° | 21.4° |
H3' | C3' | O3' | HO3' | 53.8° | 62.2° |