C31
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| P | O1P | sing | 1.61Å | 1.61Å | |
| P | O2P | doub | 1.48Å | 1.45Å | |
| P | O3P | sing | 1.61Å | 1.60Å | |
| P | O5' | sing | 1.61Å | 1.61Å | |
| O1P | H1P | sing | 0.97Å | 0.95Å | |
| O3P | H3P | sing | 0.97Å | 0.95Å | |
| O5' | C5' | sing | 1.43Å | 1.52Å | |
| C5' | C4' | sing | 1.53Å | 1.49Å | |
| C5' | H5'1 | sing | 1.09Å | 1.12Å | |
| C5' | H5'2 | sing | 1.09Å | 1.11Å | |
| C4' | O4' | sing | 1.44Å | 1.44Å | |
| C4' | C3' | sing | 1.54Å | 1.52Å | |
| C4' | H4' | sing | 1.09Å | 1.11Å | |
| O4' | C1' | sing | 1.44Å | 1.40Å | |
| C3' | O3' | sing | 1.43Å | 1.42Å | |
| C3' | C2' | sing | 1.55Å | 1.53Å | |
| C3' | H3' | sing | 1.09Å | 1.12Å | |
| O3' | HA | sing | 0.97Å | 0.95Å | |
| C2' | O2' | sing | 1.43Å | 1.41Å | |
| C2' | C1' | sing | 1.55Å | 1.53Å | |
| C2' | H2' | sing | 1.09Å | 1.11Å | |
| O2' | CA' | sing | 1.43Å | 1.42Å | |
| C1' | N1 | sing | 1.46Å | 1.48Å | |
| C1' | H1' | sing | 1.09Å | 1.11Å | |
| N1 | C2 | sing | 1.35Å | 1.39Å | |
| N1 | C6 | sing | 1.36Å | 1.38Å | |
| C2 | O2 | doub | 1.22Å | 1.21Å | |
| C2 | N3 | sing | 1.33Å | 1.37Å | |
| N3 | C4 | doub | 1.33Å | 1.38Å | |
| C4 | N4 | sing | 1.38Å | 1.24Å | |
| C4 | C5 | sing | 1.41Å | 1.43Å | |
| N4 | H4N1 | sing | 0.97Å | 1.02Å | |
| N4 | H4N2 | sing | 0.97Å | 1.02Å | |
| C5 | C6 | doub | 1.35Å | 1.35Å | |
| C5 | H5 | sing | 1.08Å | 1.10Å | |
| C6 | H6 | sing | 1.08Å | 1.10Å | |
| CA' | CB' | sing | 1.53Å | 1.42Å | |
| CA' | HA'1 | sing | 1.09Å | 1.11Å | |
| CA' | HA'2 | sing | 1.09Å | 1.11Å | |
| CB' | CC | sing | 1.53Å | 1.41Å | |
| CB' | HB'1 | sing | 1.09Å | 1.11Å | |
| CB' | HB'2 | sing | 1.09Å | 1.12Å | |
| CC | ND' | sing | 1.47Å | 1.38Å | |
| CC | HCC1 | sing | 1.09Å | 1.12Å | |
| CC | HCC2 | sing | 1.09Å | 1.11Å | |
| ND' | HD'1 | sing | 1.01Å | 1.02Å | |
| ND' | HD'2 | sing | 1.01Å | 1.02Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O1P | P | O2P | 114.5° | 109.4° |
| O1P | P | O3P | 95.8° | 109.4° |
| O1P | P | O5' | 103.7° | 109.6° |
| P | O1P | H1P | 114.5° | 106.9° |
| O2P | P | O3P | 106.7° | 109.4° |
| O2P | P | O5' | 108.0° | 109.5° |
| O3P | P | O5' | 127.9° | 109.5° |
| P | O3P | H3P | 95.7° | 106.8° |
| P | O5' | C5' | 125.0° | 106.8° |
| O5' | C5' | C4' | 115.1° | 109.5° |
| O5' | C5' | H5'1 | 110.2° | 109.5° |
| O5' | C5' | H5'2 | 110.1° | 109.5° |
| C4' | C5' | H5'1 | 110.2° | 109.4° |
| C4' | C5' | H5'2 | 110.2° | 109.4° |
| C5' | C4' | O4' | 109.9° | 110.0° |
| C5' | C4' | C3' | 112.9° | 109.9° |
| C5' | C4' | H4' | 108.2° | 109.9° |
| H5'1 | C5' | H5'2 | 100.1° | 109.5° |
| O4' | C4' | C3' | 109.3° | 107.3° |
| O4' | C4' | H4' | 108.2° | 109.8° |
| C4' | O4' | C1' | 109.2° | 107.0° |
| C3' | C4' | H4' | 108.2° | 109.9° |
| C4' | C3' | O3' | 112.0° | 110.5° |
| C4' | C3' | C2' | 105.0° | 104.2° |
| C4' | C3' | H3' | 111.0° | 110.5° |
| O4' | C1' | C2' | 109.5° | 103.5° |
| O4' | C1' | N1 | 109.8° | 110.6° |
| O4' | C1' | H1' | 107.2° | 110.6° |
| O3' | C3' | C2' | 106.7° | 110.5° |
| O3' | C3' | H3' | 111.0° | 110.4° |
| C3' | O3' | HA | 112.0° | 106.8° |
| C2' | C3' | H3' | 110.9° | 110.6° |
| C3' | C2' | O2' | 112.5° | 110.9° |
| C3' | C2' | C1' | 104.5° | 102.1° |
| C3' | C2' | H2' | 109.7° | 110.9° |
| O2' | C2' | C1' | 110.5° | 110.9° |
| O2' | C2' | H2' | 109.7° | 110.8° |
| C2' | O2' | CA' | 112.3° | 106.8° |
| C1' | C2' | H2' | 109.7° | 110.9° |
| C2' | C1' | N1 | 115.6° | 110.8° |
| C2' | C1' | H1' | 107.2° | 110.6° |
| O2' | CA' | CB' | 113.5° | 109.5° |
| O2' | CA' | HA'1 | 110.8° | 109.5° |
| O2' | CA' | HA'2 | 110.7° | 109.5° |
| N1 | C1' | H1' | 107.2° | 110.5° |
| C1' | N1 | C2 | 118.9° | 119.8° |
| C1' | N1 | C6 | 120.9° | 119.8° |
| C2 | N1 | C6 | 120.2° | 120.4° |
| N1 | C2 | O2 | 123.5° | 119.5° |
| N1 | C2 | N3 | 115.3° | 121.0° |
| N1 | C6 | C5 | 122.8° | 119.2° |
| N1 | C6 | H6 | 118.6° | 120.3° |
| O2 | C2 | N3 | 121.2° | 119.5° |
| C2 | N3 | C4 | 127.5° | 120.7° |
| N3 | C4 | N4 | 119.5° | 120.2° |
| N3 | C4 | C5 | 114.4° | 119.6° |
| N4 | C4 | C5 | 126.1° | 120.2° |
| C4 | N4 | H4N1 | 119.4° | 120.0° |
| C4 | N4 | H4N2 | 126.1° | 119.9° |
| C4 | C5 | C6 | 119.7° | 119.0° |
| C4 | C5 | H5 | 120.1° | 120.5° |
| H4N1 | N4 | H4N2 | 114.5° | 120.1° |
| C6 | C5 | H5 | 120.1° | 120.5° |
| C5 | C6 | H6 | 118.6° | 120.4° |
| CB' | CA' | HA'1 | 110.7° | 109.4° |
| CB' | CA' | HA'2 | 110.7° | 109.4° |
| CA' | CB' | CC | 104.2° | 109.5° |
| CA' | CB' | HB'1 | 114.2° | 109.5° |
| CA' | CB' | HB'2 | 114.2° | 109.4° |
| HA'1 | CA' | HA'2 | 99.6° | 109.5° |
| CC | CB' | HB'1 | 114.2° | 109.5° |
| CC | CB' | HB'2 | 114.2° | 109.4° |
| CB' | CC | ND' | 111.7° | 109.5° |
| CB' | CC | HCC1 | 111.4° | 109.5° |
| CB' | CC | HCC2 | 111.4° | 109.5° |
| HB'1 | CB' | HB'2 | 96.2° | 109.6° |
| ND' | CC | HCC1 | 111.4° | 109.5° |
| ND' | CC | HCC2 | 111.4° | 109.5° |
| CC | ND' | HD'1 | 125.9° | 106.7° |
| CC | ND' | HD'2 | 125.9° | 106.7° |
| HCC1 | CC | HCC2 | 99.0° | 109.4° |
| HD'1 | ND' | HD'2 | 82.7° | 106.7° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O1P | P | O2P | O3P | 104.6° | 119.9° |
| O1P | P | O2P | O5' | 115.0° | 120.1° |
| O1P | P | O3P | O5' | 112.4° | 120.1° |
| O1P | P | O3P | H3P | 180.0° | 60.1° |
| O1P | P | O5' | C5' | 51.1° | 180.0° |
| O2P | P | O3P | O5' | 129.9° | 120.0° |
| O2P | P | O1P | H1P | 180.0° | 60.0° |
| O2P | P | O3P | H3P | 62.3° | 180.0° |
| O2P | P | O5' | C5' | 173.0° | 60.0° |
| O3P | P | O1P | H1P | 68.8° | 59.9° |
| O3P | P | O5' | C5' | 57.6° | 60.0° |
| O5' | P | O1P | H1P | 62.5° | 180.0° |
| O5' | P | O3P | H3P | 67.6° | 60.0° |
| P | O5' | C5' | C4' | 70.8° | 180.0° |
| P | O5' | C5' | H5'1 | 164.0° | 60.0° |
| P | O5' | C5' | H5'2 | 54.5° | 60.0° |
| O5' | C5' | C4' | H5'1 | 125.2° | 120.1° |
| O5' | C5' | C4' | H5'2 | 125.2° | 120.0° |
| O5' | C5' | H5'1 | H5'2 | 116.0° | 120.0° |
| O5' | C5' | C4' | O4' | 133.7° | 62.1° |
| O5' | C5' | C4' | C3' | 104.0° | 180.0° |
| O5' | C5' | C4' | H4' | 15.7° | 59.0° |
| C4' | C5' | H5'1 | H5'2 | 116.0° | 119.9° |
| C5' | C4' | O4' | C3' | 124.4° | 119.5° |
| C5' | C4' | O4' | H4' | 118.0° | 121.1° |
| C5' | C4' | C3' | H4' | 119.7° | 121.1° |
| C5' | C4' | O4' | C1' | 114.1° | 146.0° |
| C5' | C4' | C3' | O3' | 122.3° | 119.6° |
| C5' | C4' | C3' | C2' | 122.3° | 121.6° |
| C5' | C4' | C3' | H3' | 2.4° | 2.9° |
| H5'1 | C5' | C4' | O4' | 101.1° | 177.9° |
| H5'1 | C5' | C4' | C3' | 21.2° | 60.0° |
| H5'1 | C5' | C4' | H4' | 141.0° | 61.1° |
| H5'2 | C5' | C4' | O4' | 8.5° | 57.9° |
| H5'2 | C5' | C4' | C3' | 130.7° | 60.0° |
| H5'2 | C5' | C4' | H4' | 109.5° | 179.0° |
| O4' | C4' | C3' | H4' | 117.6° | 119.4° |
| O4' | C4' | C3' | O3' | 115.1° | 120.8° |
| O4' | C4' | C3' | C2' | 0.3° | 2.0° |
| O4' | C4' | C3' | H3' | 120.3° | 116.7° |
| C4' | O4' | C1' | C2' | 16.3° | 40.0° |
| C4' | O4' | C1' | N1 | 111.6° | 158.7° |
| C4' | O4' | C1' | H1' | 132.3° | 78.5° |
| C3' | C4' | O4' | C1' | 10.4° | 26.5° |
| C4' | C3' | O3' | C2' | 114.4° | 114.8° |
| C4' | C3' | O3' | H3' | 124.6° | 122.5° |
| C4' | C3' | C2' | H3' | 119.9° | 118.7° |
| C4' | C3' | O3' | HA | 180.0° | 65.2° |
| C4' | C3' | C2' | O2' | 111.2° | 139.1° |
| C4' | C3' | C2' | C1' | 8.7° | 20.8° |
| C4' | C3' | C2' | H2' | 126.3° | 97.3° |
| H4' | C4' | O4' | C1' | 128.0° | 92.9° |
| H4' | C4' | C3' | O3' | 2.5° | 1.4° |
| H4' | C4' | C3' | C2' | 117.9° | 117.3° |
| H4' | C4' | C3' | H3' | 122.1° | 123.9° |
| O4' | C1' | C2' | C3' | 15.6° | 37.0° |
| O4' | C1' | C2' | O2' | 105.7° | 155.2° |
| O4' | C1' | C2' | N1 | 124.6° | 118.6° |
| O4' | C1' | C2' | H1' | 116.0° | 118.5° |
| O4' | C1' | C2' | H2' | 133.1° | 81.2° |
| O4' | C1' | N1 | H1' | 116.1° | 122.9° |
| O4' | C1' | N1 | C2 | 14.1° | 58.3° |
| O4' | C1' | N1 | C6 | 165.6° | 121.4° |
| O3' | C3' | C2' | H3' | 121.0° | 122.5° |
| O3' | C3' | C2' | O2' | 7.9° | 20.3° |
| O3' | C3' | C2' | C1' | 127.8° | 97.9° |
| O3' | C3' | C2' | H2' | 114.6° | 143.9° |
| C2' | C3' | O3' | HA | 65.6° | 180.0° |
| C3' | C2' | O2' | C1' | 116.4° | 112.8° |
| C3' | C2' | O2' | H2' | 122.5° | 123.6° |
| C3' | C2' | C1' | H2' | 117.6° | 118.2° |
| C3' | C2' | O2' | CA' | 172.9° | 94.3° |
| C3' | C2' | C1' | N1 | 109.0° | 155.6° |
| C3' | C2' | C1' | H1' | 131.5° | 81.5° |
| H3' | C3' | O3' | HA | 55.4° | 57.4° |
| H3' | C3' | C2' | O2' | 128.9° | 102.2° |
| H3' | C3' | C2' | C1' | 111.2° | 139.5° |
| H3' | C3' | C2' | H2' | 6.4° | 21.4° |
| O2' | C2' | C1' | H2' | 121.2° | 123.6° |
| O2' | C2' | C1' | N1 | 129.7° | 86.2° |
| O2' | C2' | C1' | H1' | 10.3° | 36.7° |
| C2' | O2' | CA' | CB' | 74.8° | 180.0° |
| C2' | O2' | CA' | HA'1 | 50.5° | 60.0° |
| C2' | O2' | CA' | HA'2 | 160.0° | 60.0° |
| C1' | C2' | O2' | CA' | 70.7° | 152.9° |
| C2' | C1' | N1 | H1' | 119.4° | 122.9° |
| C2' | C1' | N1 | C2 | 110.3° | 55.9° |
| C2' | C1' | N1 | C6 | 69.9° | 124.3° |
| H2' | C2' | O2' | CA' | 50.4° | 29.3° |
| H2' | C2' | C1' | N1 | 8.5° | 37.4° |
| H2' | C2' | C1' | H1' | 110.9° | 160.3° |
| O2' | CA' | CB' | HA'1 | 125.3° | 120.0° |
| O2' | CA' | CB' | HA'2 | 125.3° | 120.0° |
| O2' | CA' | HA'1 | HA'2 | 116.6° | 120.1° |
| O2' | CA' | CB' | CC | 178.2° | 180.0° |
| O2' | CA' | CB' | HB'1 | 53.0° | 60.0° |
| O2' | CA' | CB' | HB'2 | 56.5° | 60.0° |
| C1' | N1 | C2 | C6 | 179.8° | 179.7° |
| C1' | N1 | C2 | O2 | 1.3° | 0.3° |
| C1' | N1 | C2 | N3 | 179.0° | 179.7° |
| C1' | N1 | C6 | C5 | 179.6° | 180.0° |
| C1' | N1 | C6 | H6 | 0.4° | 0.0° |
| H1' | C1' | N1 | C2 | 130.2° | 178.8° |
| H1' | C1' | N1 | C6 | 49.5° | 1.4° |
| N1 | C2 | O2 | N3 | 179.6° | 179.4° |
| N1 | C2 | N3 | C4 | 1.0° | 0.6° |
| C2 | N1 | C6 | C5 | 0.7° | 0.2° |
| C2 | N1 | C6 | H6 | 179.4° | 179.8° |
| C6 | N1 | C2 | O2 | 178.5° | 180.0° |
| C6 | N1 | C2 | N3 | 1.2° | 0.6° |
| N1 | C6 | C5 | C4 | 0.2° | 0.0° |
| N1 | C6 | C5 | H6 | 180.0° | 180.0° |
| N1 | C6 | C5 | H5 | 179.8° | 180.0° |
| O2 | C2 | N3 | C4 | 178.7° | 180.0° |
| C2 | N3 | C4 | N4 | 179.8° | 179.7° |
| C2 | N3 | C4 | C5 | 0.1° | 0.4° |
| N3 | C4 | N4 | C5 | 180.0° | 179.9° |
| N3 | C4 | N4 | H4N1 | 180.0° | 0.1° |
| N3 | C4 | N4 | H4N2 | 0.0° | 179.9° |
| N3 | C4 | C5 | C6 | 0.5° | 0.0° |
| N3 | C4 | C5 | H5 | 179.5° | 179.9° |
| C4 | N4 | H4N1 | H4N2 | 180.0° | 180.0° |
| N4 | C4 | C5 | C6 | 179.5° | 179.9° |
| N4 | C4 | C5 | H5 | 0.5° | 0.0° |
| C5 | C4 | N4 | H4N1 | 0.0° | 180.0° |
| C5 | C4 | N4 | H4N2 | 180.0° | 0.0° |
| C4 | C5 | C6 | H5 | 180.0° | 179.9° |
| C4 | C5 | C6 | H6 | 179.7° | 180.0° |
| H5 | C5 | C6 | H6 | 0.3° | 0.0° |
| CB' | CA' | HA'1 | HA'2 | 116.6° | 119.9° |
| CA' | CB' | CC | HB'1 | 125.3° | 120.0° |
| CA' | CB' | CC | HB'2 | 125.3° | 119.9° |
| CA' | CB' | HB'1 | HB'2 | 120.1° | 120.0° |
| CA' | CB' | CC | ND' | 171.2° | 180.0° |
| CA' | CB' | CC | HCC1 | 46.0° | 60.0° |
| CA' | CB' | CC | HCC2 | 63.5° | 60.0° |
| HA'1 | CA' | CB' | CC | 56.5° | 60.0° |
| HA'1 | CA' | CB' | HB'1 | 178.2° | 180.0° |
| HA'1 | CA' | CB' | HB'2 | 68.8° | 60.0° |
| HA'2 | CA' | CB' | CC | 53.0° | 60.0° |
| HA'2 | CA' | CB' | HB'1 | 72.3° | 60.0° |
| HA'2 | CA' | CB' | HB'2 | 178.2° | 179.9° |
| CC | CB' | HB'1 | HB'2 | 120.1° | 120.0° |
| CB' | CC | ND' | HCC1 | 125.3° | 120.0° |
| CB' | CC | ND' | HCC2 | 125.3° | 120.0° |
| CB' | CC | HCC1 | HCC2 | 117.2° | 120.0° |
| CB' | CC | ND' | HD'1 | 34.1° | 180.0° |
| CB' | CC | ND' | HD'2 | 143.5° | 66.3° |
| HB'1 | CB' | CC | ND' | 63.5° | 60.0° |
| HB'1 | CB' | CC | HCC1 | 171.2° | 180.0° |
| HB'1 | CB' | CC | HCC2 | 61.8° | 60.0° |
| HB'2 | CB' | CC | ND' | 46.0° | 60.1° |
| HB'2 | CB' | CC | HCC1 | 79.3° | 60.0° |
| HB'2 | CB' | CC | HCC2 | 171.3° | 179.9° |
| ND' | CC | HCC1 | HCC2 | 117.3° | 120.0° |
| CC | ND' | HD'1 | HD'2 | 129.7° | 113.8° |
| HCC1 | CC | ND' | HD'1 | 91.2° | 60.0° |
| HCC1 | CC | ND' | HD'2 | 18.2° | 53.8° |
| HCC2 | CC | ND' | HD'1 | 159.3° | 60.0° |
| HCC2 | CC | ND' | HD'2 | 91.3° | 173.8° |
