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C2Y

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C7C8doub1.39Å1.39ÅAromatic
C7C6sing1.38Å1.38ÅAromatic
C8C9sing1.38Å1.39ÅAromatic
C6C5doub1.39Å1.40ÅAromatic
C9C4doub1.39Å1.38ÅAromatic
C5C4sing1.40Å1.40ÅAromatic
C5C2sing1.47Å1.45ÅAromatic
O1C1sing1.45Å1.45Å
O1Csing1.35Å1.33Å
C4Nsing1.38Å1.38ÅAromatic
C2Csing1.47Å1.45Å
C2C3doub1.36Å1.38ÅAromatic
COdoub1.22Å1.20Å
NC3sing1.35Å1.36ÅAromatic
C6H1sing1.08Å1.08Å
C7H2sing1.08Å1.08Å
C8H3sing1.08Å1.08Å
C9H4sing1.08Å1.08Å
NH5sing0.97Å1.00Å
C1H6sing1.09Å1.10Å
C1H7sing1.09Å1.10Å
C1H8sing1.09Å1.10Å
C3H9sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C8C7C6120.7°120.2°
C7C8C9120.9°120.7°
C8C7H2119.6°119.9°
C7C8H3119.5°119.6°
C7C6C5119.6°119.7°
C7C6H1120.2°120.2°
C6C7H2119.7°119.9°
C8C9C4118.1°119.9°
C9C8H3119.5°119.7°
C8C9H4121.0°120.0°
C6C5C4118.5°120.1°
C6C5C2134.3°134.0°
C5C6H1120.2°120.1°
C9C4C5122.2°119.4°
C9C4N130.3°133.1°
C4C9H4121.0°120.1°
C4C5C2107.2°105.9°
C5C4N107.4°107.5°
C5C2C129.5°126.8°
C5C2C3105.7°106.4°
C1O1C115.9°117.0°
O1C1H6109.5°109.4°
O1C1H7109.5°109.5°
O1C1H8109.5°109.5°
O1CC2111.8°120.0°
O1CO123.8°120.0°
C4NC3109.4°110.4°
C4NH5125.3°124.8°
CC2C3124.6°126.8°
C2CO124.3°120.0°
C2C3N110.3°109.8°
C2C3H9124.9°125.1°
C3NH5125.3°124.8°
NC3H9124.9°125.1°
H6C1H7109.5°109.5°
H6C1H8109.5°109.5°
H7C1H8109.4°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C8C7C6H2180.0°179.8°
C7C8C9H3180.0°179.8°
C8C7C6C50.6°0.0°
C7C8C9C41.0°0.5°
C8C7C6H1179.4°180.0°
C7C8C9H4179.0°180.0°
C6C7C8C90.6°0.2°
C7C6C5H1180.0°180.0°
C7C6C5C41.3°0.0°
C7C6C5C2176.4°180.0°
C6C7C8H3179.4°180.0°
C8C9C4H4180.0°179.5°
C8C9C4C50.4°0.5°
C8C9C4N177.7°179.8°
C9C8C7H2179.4°180.0°
C6C5C4C90.8°0.3°
C6C5C4C2178.2°180.0°
C6C5C4N179.2°180.0°
C6C5C2C4.7°0.0°
C6C5C2C3178.9°180.0°
C5C6C7H2179.4°179.8°
C9C4C5N178.5°179.7°
C9C4C5C2177.5°179.8°
C9C4NC3177.7°179.7°
C4C9C8H3179.0°179.7°
C9C4NH52.3°0.4°
C4C5C2C173.1°180.0°
C4C5C2C31.1°0.0°
C5C4NC30.5°0.0°
C4C5C6H1178.7°180.0°
C5C4C9H4179.6°180.0°
C5C4NH5179.5°180.0°
C5C2CO15.9°180.0°
C2C5C4N1.0°0.0°
C5C2CC3173.2°179.9°
C5C2CO171.8°0.0°
C5C2C3N0.8°0.0°
C2C5C6H13.6°0.0°
C5C2C3H9179.3°180.0°
C1O1CC2174.7°180.0°
C1O1CO3.1°0.0°
O1C1H6H7120.0°120.0°
O1C1H6H8120.0°120.0°
O1C1H7H8120.0°120.0°
O1CC2O177.7°180.0°
O1CC2C3179.1°0.1°
CO1C1H6180.0°180.0°
CO1C1H760.0°60.0°
CO1C1H860.0°60.0°
C4NC3C20.2°0.0°
C4NC3H5180.0°179.9°
NC4C9H42.3°0.3°
C4NC3H9179.9°180.0°
CC2C3N173.8°180.0°
CC2C3H96.2°0.1°
C3C2CO1.3°179.9°
C2C3NH9180.0°180.0°
C2C3NH5179.8°180.0°
H1C6C7H20.6°0.2°
H2C7C8H30.6°0.2°
H3C8C9H41.0°0.2°
H5NC3H90.1°0.1°
H6C1H7H8120.0°120.0°

223166

PDB entries from 2024-07-31

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