C2S

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
OP3	P	sing	1.63Å	15.70Å
OP3	HOP3	sing	0.98Å	0.95Å
P	S1P	doub	1.96Å	1.98Å
P	S2P	sing	2.12Å	1.98Å
P	O5'	sing	1.63Å	1.61Å
S2P	HOP2	sing	1.34Å	0.95Å
O5'	C5'	sing	1.42Å	1.42Å
C5'	C4'	sing	1.52Å	1.53Å
C5'	H5'	sing	1.09Å	1.09Å
C5'	H5''	sing	1.09Å	1.09Å
C4'	O4'	sing	1.44Å	1.42Å
C4'	C3'	sing	1.52Å	1.54Å
C4'	H4'	sing	1.09Å	1.09Å
O4'	C1'	sing	1.43Å	1.41Å
C3'	O3'	sing	1.43Å	1.42Å
C3'	C2'	sing	1.51Å	1.53Å
C3'	H3'	sing	1.09Å	1.09Å
O3'	HO3'	sing	0.97Å	0.95Å
C2'	C1'	sing	1.52Å	1.52Å
C2'	H2'1	sing	1.10Å	1.11Å
C1'	N1	sing	1.43Å	1.49Å
C1'	H1'	sing	1.10Å	1.10Å
N1	C2	sing	1.42Å	1.40Å
N1	C6	sing	1.39Å	1.37Å
C2	O2	doub	1.23Å	1.23Å
C2	N3	sing	1.38Å	1.36Å
N3	C4	doub	1.31Å	1.32Å
C4	N4	sing	1.38Å	1.31Å
C4	C5	sing	1.49Å	1.43Å
N4	H41	sing	0.99Å	1.03Å
N4	H42	sing	0.99Å	1.00Å
C5	C6	doub	1.33Å	1.36Å
C5	H5	sing	1.08Å	1.08Å
C6	H6	sing	1.09Å	1.08Å
C2'	H2'2	sing	1.09Å	1.10Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
P	OP3	HOP3	126.5°	118.4°
OP3	P	S1P	126.5°	110.6°
OP3	P	S2P	123.8°	105.4°
OP3	P	O5'	64.2°	98.6°
S1P	P	S2P	108.2°	119.0°
S1P	P	O5'	110.7°	113.2°
S2P	P	O5'	110.6°	107.8°
P	S2P	HOP2	123.8°	97.8°
P	O5'	C5'	120.6°	120.1°
O5'	C5'	C4'	112.2°	108.9°
O5'	C5'	H5'	109.1°	109.0°
O5'	C5'	H5''	109.5°	108.9°
C4'	C5'	H5'	108.8°	110.3°
C4'	C5'	H5''	108.4°	110.3°
C5'	C4'	O4'	110.5°	107.9°
C5'	C4'	C3'	114.5°	112.9°
C5'	C4'	H4'	108.1°	109.5°
H5'	C5'	H5''	108.7°	109.3°
O4'	C4'	C3'	107.4°	106.2°
O4'	C4'	H4'	108.2°	107.9°
C4'	O4'	C1'	106.5°	109.3°
C3'	C4'	H4'	107.9°	112.2°
C4'	C3'	O3'	108.6°	109.9°
C4'	C3'	C2'	102.0°	103.1°
C4'	C3'	H3'	111.8°	113.5°
O4'	C1'	C2'	102.6°	107.4°
O4'	C1'	N1	111.6°	109.3°
O4'	C1'	H1'	109.4°	108.0°
O3'	C3'	C2'	112.0°	109.7°
O3'	C3'	H3'	110.8°	107.4°
C3'	O3'	HO3'	108.6°	107.3°
C2'	C3'	H3'	111.2°	113.2°
C3'	C2'	C1'	100.8°	102.5°
C3'	C2'	H2'1	104.7°	109.7°
C3'	C2'	H2'2	174.5°	114.1°
C1'	C2'	H2'1	154.4°	110.6°
C2'	C1'	N1	113.7°	112.8°
C2'	C1'	H1'	108.7°	111.5°
C1'	C2'	H2'2	80.9°	111.7°
H2'1	C2'	H2'2	74.0°	108.3°
N1	C1'	H1'	110.6°	107.8°
C1'	N1	C2	118.9°	122.0°
C1'	N1	C6	121.1°	118.6°
C2	N1	C6	120.0°	119.4°
N1	C2	O2	122.0°	121.0°
N1	C2	N3	120.0°	118.8°
N1	C6	C5	120.4°	122.7°
N1	C6	H6	118.5°	116.2°
O2	C2	N3	118.1°	120.2°
C2	N3	C4	119.6°	121.1°
N3	C4	N4	116.1°	120.2°
N3	C4	C5	122.8°	121.7°
N4	C4	C5	121.1°	118.2°
C4	N4	H41	115.7°	118.0°
C4	N4	H42	121.9°	118.0°
C4	C5	C6	117.2°	116.3°
C4	C5	H5	122.5°	120.6°
H41	N4	H42	121.8°	123.9°
C6	C5	H5	120.3°	123.1°
C5	C6	H6	121.1°	121.1°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
OP3	P	S1P	S2P	166.1°	122.2°
OP3	P	S1P	O5'	72.6°	109.6°
OP3	P	S2P	O5'	72.1°	104.5°
OP3	P	S2P	HOP2	180.0°	66.6°
OP3	P	O5'	C5'	72.2°	180.0°
HOP3	OP3	P	S1P	180.0°	167.3°
HOP3	OP3	P	S2P	16.0°	37.4°
HOP3	OP3	P	O5'	82.5°	73.8°
S1P	P	S2P	O5'	121.4°	130.7°
S1P	P	S2P	HOP2	13.5°	58.1°
S1P	P	O5'	C5'	49.4°	63.1°
S2P	P	O5'	C5'	169.3°	70.7°
O5'	P	S2P	HOP2	107.9°	171.1°
P	O5'	C5'	C4'	172.8°	180.0°
P	O5'	C5'	H5'	66.5°	59.6°
P	O5'	C5'	H5''	52.3°	59.6°
O5'	C5'	C4'	H5'	120.9°	119.6°
O5'	C5'	C4'	H5''	121.1°	119.5°
O5'	C5'	H5'	H5''	119.4°	119.0°
O5'	C5'	C4'	O4'	67.0°	62.4°
O5'	C5'	C4'	C3'	54.5°	179.5°
O5'	C5'	C4'	H4'	174.8°	54.7°
C4'	C5'	H5'	H5''	117.8°	121.5°
C5'	C4'	O4'	C3'	125.6°	121.4°
C5'	C4'	O4'	H4'	118.1°	118.2°
C5'	C4'	C3'	H4'	120.4°	124.3°
C5'	C4'	O4'	C1'	148.3°	108.6°
C5'	C4'	C3'	O3'	124.5°	154.2°
C5'	C4'	C3'	C2'	117.0°	88.8°
C5'	C4'	C3'	H3'	1.9°	34.0°
H5'	C5'	C4'	O4'	172.2°	57.1°
H5'	C5'	C4'	C3'	66.4°	60.0°
H5'	C5'	C4'	H4'	53.9°	174.3°
H5''	C5'	C4'	O4'	54.2°	178.1°
H5''	C5'	C4'	C3'	175.6°	61.0°
H5''	C5'	C4'	H4'	64.1°	64.8°
O4'	C4'	C3'	H4'	116.5°	117.6°
O4'	C4'	C3'	O3'	112.4°	87.7°
O4'	C4'	C3'	C2'	6.1°	29.2°
O4'	C4'	C3'	H3'	125.0°	152.1°
C4'	O4'	C1'	C2'	42.4°	9.0°
C4'	O4'	C1'	N1	164.4°	131.7°
C4'	O4'	C1'	H1'	72.9°	111.3°
C3'	C4'	O4'	C1'	22.7°	12.7°
C4'	C3'	O3'	C2'	111.9°	112.7°
C4'	C3'	O3'	H3'	123.2°	123.9°
C4'	C3'	C2'	H3'	119.4°	123.0°
C4'	C3'	O3'	HO3'	180.0°	128.0°
C4'	C3'	C2'	C1'	29.8°	33.4°
C4'	C3'	C2'	H2'1	153.3°	84.1°
C4'	C3'	C2'	H2'2	77.9°	154.3°
H4'	C4'	O4'	C1'	93.5°	133.2°
H4'	C4'	C3'	O3'	4.1°	29.9°
H4'	C4'	C3'	C2'	122.6°	146.9°
H4'	C4'	C3'	H3'	118.5°	90.3°
O4'	C1'	C2'	C3'	44.7°	26.9°
O4'	C1'	C2'	N1	120.6°	120.5°
O4'	C1'	C2'	H1'	115.8°	118.1°
O4'	C1'	C2'	H2'1	142.1°	90.0°
O4'	C1'	N1	H1'	122.0°	117.1°
O4'	C1'	N1	C2	126.2°	147.1°
O4'	C1'	N1	C6	55.4°	32.9°
O4'	C1'	C2'	H2'2	130.0°	149.4°
O3'	C3'	C2'	H3'	124.6°	119.9°
O3'	C3'	C2'	C1'	86.2°	83.6°
O3'	C3'	C2'	H2'1	90.8°	158.9°
O3'	C3'	C2'	H2'2	166.2°	37.2°
C2'	C3'	O3'	HO3'	68.1°	119.3°
C3'	C2'	C1'	H2'1	173.2°	116.9°
C3'	C2'	C1'	H2'2	174.7°	122.5°
C3'	C2'	H2'1	H2'2	174.5°	125.1°
C3'	C2'	C1'	N1	165.3°	147.4°
C3'	C2'	C1'	H1'	71.1°	91.2°
H3'	C3'	O3'	HO3'	56.8°	4.1°
H3'	C3'	C2'	C1'	149.1°	156.4°
H3'	C3'	C2'	H2'1	33.9°	38.9°
H3'	C3'	C2'	H2'2	41.5°	82.7°
C1'	C2'	H2'1	H2'2	12.4°	122.7°
C2'	C1'	N1	H1'	122.6°	123.5°
C2'	C1'	N1	C2	118.4°	93.5°
C2'	C1'	N1	C6	60.0°	86.5°
H2'1	C2'	C1'	N1	21.5°	30.6°
H2'1	C2'	C1'	H1'	102.1°	151.9°
C1'	N1	C2	C6	178.4°	180.0°
C1'	N1	C2	O2	2.3°	0.0°
C1'	N1	C2	N3	177.0°	180.0°
C1'	N1	C6	C5	177.4°	180.0°
C1'	N1	C6	H6	2.8°	0.0°
N1	C1'	C2'	H2'2	9.4°	90.1°
H1'	C1'	N1	C2	4.2°	30.0°
H1'	C1'	N1	C6	177.4°	150.0°
H1'	C1'	C2'	H2'2	114.2°	31.3°
N1	C2	O2	N3	179.3°	180.0°
N1	C2	N3	C4	1.3°	0.0°
C2	N1	C6	C5	0.9°	0.0°
C2	N1	C6	H6	178.8°	180.0°
C6	N1	C2	O2	179.3°	180.0°
C6	N1	C2	N3	1.4°	0.0°
N1	C6	C5	C4	0.2°	0.0°
N1	C6	C5	H6	179.7°	180.0°
N1	C6	C5	H5	179.9°	179.9°
O2	C2	N3	C4	179.4°	180.0°
C2	N3	C4	N4	179.0°	180.0°
C2	N3	C4	C5	0.6°	0.0°
N3	C4	N4	C5	179.6°	180.0°
N3	C4	N4	H41	2.8°	162.3°
N3	C4	N4	H42	174.1°	17.6°
N3	C4	C5	C6	0.1°	0.0°
N3	C4	C5	H5	179.7°	179.9°
C4	N4	H41	H42	171.4°	179.9°
N4	C4	C5	C6	179.5°	180.0°
N4	C4	C5	H5	0.1°	0.1°
C5	C4	N4	H41	176.8°	17.7°
C5	C4	N4	H42	5.5°	162.4°
C4	C5	C6	H5	179.7°	179.9°
C4	C5	C6	H6	179.5°	180.0°
H5	C5	C6	H6	0.2°	0.0°

Definition date:	2001-11-02
Last modified:	2011-06-04
Release status:	REL
Processing site:	RCSB