C2R
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| PA | O1A | doub | 1.48Å | 1.51Å | |
| PA | O2A | sing | 1.61Å | 1.52Å | |
| PA | O3A | sing | 1.61Å | 1.53Å | |
| PA | O5' | sing | 1.61Å | 1.63Å | |
| O2A | H2A | sing | 0.97Å | 0.95Å | |
| O3A | H3A | sing | 0.97Å | 0.95Å | |
| O5' | C5' | sing | 1.43Å | 1.44Å | |
| C2' | O2' | sing | 1.43Å | 1.41Å | |
| C2' | C3' | sing | 1.55Å | 1.53Å | |
| C2' | C1' | sing | 1.54Å | 1.53Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| O2' | H3 | sing | 0.97Å | 0.95Å | |
| C3' | O3' | sing | 1.43Å | 1.42Å | |
| C3' | C4' | sing | 1.54Å | 1.52Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| O3' | H1 | sing | 0.97Å | 0.95Å | |
| C5' | C4' | sing | 1.53Å | 1.51Å | |
| C5' | H5'1 | sing | 1.09Å | 1.10Å | |
| C5' | H5'2 | sing | 1.09Å | 1.10Å | |
| C4' | O4' | sing | 1.44Å | 1.45Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| O4' | C1' | sing | 1.45Å | 1.42Å | |
| C1' | N1 | sing | 1.47Å | 1.46Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| N1 | C5 | sing | 1.36Å | 1.37Å | Aromatic |
| N1 | C2 | sing | 1.36Å | 1.37Å | Aromatic |
| C5 | C4 | doub | 1.39Å | 1.38Å | Aromatic |
| C5 | N5 | sing | 1.38Å | 1.33Å | |
| C4 | N3 | sing | 1.36Å | 1.39Å | Aromatic |
| C4 | C6 | sing | 1.46Å | 1.52Å | |
| N3 | C2 | doub | 1.30Å | 1.31Å | Aromatic |
| C2 | H2 | sing | 1.08Å | 1.08Å | |
| N5 | HN51 | sing | 0.97Å | 1.00Å | |
| N5 | HN52 | sing | 0.97Å | 1.00Å | |
| C6 | O7 | sing | 1.35Å | 1.25Å | |
| C6 | O8 | doub | 1.22Å | 1.25Å | |
| O7 | HO7 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O1A | PA | O2A | 112.7° | 109.5° |
| O1A | PA | O3A | 112.7° | 109.5° |
| O1A | PA | O5' | 105.0° | 109.5° |
| O2A | PA | O3A | 112.5° | 109.4° |
| O2A | PA | O5' | 106.7° | 109.5° |
| PA | O2A | H2A | 109.5° | 106.9° |
| O3A | PA | O5' | 106.5° | 109.4° |
| PA | O3A | H3A | 109.5° | 106.8° |
| PA | O5' | C5' | 121.6° | 106.8° |
| O5' | C5' | C4' | 109.8° | 109.5° |
| O5' | C5' | H5'1 | 109.3° | 109.5° |
| O5' | C5' | H5'2 | 109.3° | 109.5° |
| O2' | C2' | C3' | 113.8° | 110.5° |
| O2' | C2' | C1' | 110.9° | 110.8° |
| O2' | C2' | H2' | 103.4° | 110.5° |
| C2' | O2' | H3 | 109.5° | 106.8° |
| C3' | C2' | C1' | 102.0° | 104.0° |
| C3' | C2' | H2' | 112.2° | 110.5° |
| C2' | C3' | O3' | 111.1° | 110.5° |
| C2' | C3' | C4' | 102.8° | 104.1° |
| C2' | C3' | H3' | 113.1° | 110.6° |
| C1' | C2' | H2' | 115.0° | 110.4° |
| C2' | C1' | O4' | 106.7° | 104.9° |
| C2' | C1' | N1 | 111.3° | 110.4° |
| C2' | C1' | H1' | 109.4° | 110.4° |
| O3' | C3' | C4' | 110.6° | 110.5° |
| O3' | C3' | H3' | 105.7° | 110.5° |
| C3' | O3' | H1 | 109.5° | 106.8° |
| C4' | C3' | H3' | 113.7° | 110.5° |
| C3' | C4' | C5' | 115.2° | 110.5° |
| C3' | C4' | O4' | 105.8° | 104.8° |
| C3' | C4' | H4' | 108.0° | 110.4° |
| C4' | C5' | H5'1 | 109.2° | 109.4° |
| C4' | C5' | H5'2 | 109.3° | 109.4° |
| C5' | C4' | O4' | 108.8° | 110.3° |
| C5' | C4' | H4' | 104.9° | 110.3° |
| H5'1 | C5' | H5'2 | 109.8° | 109.5° |
| O4' | C4' | H4' | 114.4° | 110.3° |
| C4' | O4' | C1' | 110.3° | 105.2° |
| O4' | C1' | N1 | 107.2° | 110.3° |
| O4' | C1' | H1' | 113.4° | 110.3° |
| N1 | C1' | H1' | 108.9° | 110.3° |
| C1' | N1 | C5 | 127.3° | 126.1° |
| C1' | N1 | C2 | 126.9° | 126.2° |
| C5 | N1 | C2 | 105.8° | 107.7° |
| N1 | C5 | C4 | 105.8° | 106.3° |
| N1 | C5 | N5 | 126.9° | 126.8° |
| N1 | C2 | N3 | 113.8° | 109.5° |
| N1 | C2 | H2 | 123.1° | 125.3° |
| C4 | C5 | N5 | 127.4° | 126.9° |
| C5 | C4 | N3 | 110.7° | 107.3° |
| C5 | C4 | C6 | 125.3° | 126.4° |
| C5 | N5 | HN51 | 109.5° | 120.0° |
| C5 | N5 | HN52 | 109.5° | 120.0° |
| N3 | C4 | C6 | 123.9° | 126.4° |
| C4 | N3 | C2 | 103.9° | 109.2° |
| C4 | C6 | O7 | 118.4° | 120.0° |
| C4 | C6 | O8 | 118.5° | 120.0° |
| N3 | C2 | H2 | 123.1° | 125.2° |
| HN51 | N5 | HN52 | 109.5° | 120.0° |
| O7 | C6 | O8 | 123.1° | 120.0° |
| C6 | O7 | HO7 | 109.5° | 106.8° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O1A | PA | O2A | O3A | 128.9° | 120.0° |
| O1A | PA | O2A | O5' | 114.7° | 120.0° |
| O1A | PA | O3A | O5' | 114.6° | 120.0° |
| O1A | PA | O2A | H2A | 119.9° | 60.0° |
| O1A | PA | O3A | H3A | 87.9° | 180.0° |
| O1A | PA | O5' | C5' | 176.5° | 55.0° |
| O2A | PA | O3A | O5' | 116.5° | 120.0° |
| O2A | PA | O3A | H3A | 41.0° | 60.0° |
| O2A | PA | O5' | C5' | 56.7° | 175.0° |
| O3A | PA | O2A | H2A | 111.2° | 60.0° |
| O3A | PA | O5' | C5' | 63.7° | 65.0° |
| O5' | PA | O2A | H2A | 5.2° | 180.0° |
| O5' | PA | O3A | H3A | 157.5° | 60.0° |
| PA | O5' | C5' | C4' | 166.2° | 180.0° |
| PA | O5' | C5' | H5'1 | 73.9° | 60.0° |
| PA | O5' | C5' | H5'2 | 46.2° | 60.0° |
| O5' | C5' | C4' | C3' | 50.6° | 178.1° |
| O5' | C5' | C4' | H5'1 | 119.8° | 120.1° |
| O5' | C5' | C4' | H5'2 | 120.0° | 120.0° |
| O5' | C5' | H5'1 | H5'2 | 119.9° | 120.0° |
| O5' | C5' | C4' | O4' | 68.0° | 66.4° |
| O5' | C5' | C4' | H4' | 169.1° | 55.8° |
| O2' | C2' | C3' | C1' | 119.5° | 118.9° |
| O2' | C2' | C3' | H2' | 117.0° | 122.6° |
| O2' | C2' | C1' | H2' | 116.9° | 122.7° |
| O2' | C2' | C3' | O3' | 35.8° | 0.1° |
| O2' | C2' | C3' | C4' | 154.1° | 118.8° |
| O2' | C2' | C3' | H3' | 82.9° | 122.6° |
| O2' | C2' | C1' | O4' | 151.9° | 142.6° |
| O2' | C2' | C1' | N1 | 91.5° | 98.5° |
| O2' | C2' | C1' | H1' | 28.8° | 23.7° |
| C3' | C2' | C1' | H2' | 121.6° | 118.5° |
| C3' | C2' | O2' | H3 | 93.1° | 61.5° |
| C2' | C3' | O3' | C4' | 113.5° | 114.7° |
| C2' | C3' | O3' | H3' | 123.1° | 122.7° |
| C2' | C3' | C4' | H3' | 122.6° | 118.7° |
| C2' | C3' | O3' | H1 | 58.0° | 65.3° |
| C2' | C3' | C4' | C5' | 92.6° | 143.0° |
| C2' | C3' | C4' | O4' | 27.7° | 24.1° |
| C2' | C3' | C4' | H4' | 150.6° | 94.7° |
| C3' | C2' | C1' | O4' | 30.4° | 23.8° |
| C3' | C2' | C1' | N1 | 147.0° | 142.7° |
| C3' | C2' | C1' | H1' | 92.6° | 95.0° |
| C1' | C2' | O2' | H3 | 21.2° | 176.2° |
| C1' | C2' | C3' | O3' | 83.7° | 118.8° |
| C1' | C2' | C3' | C4' | 34.6° | 0.1° |
| C1' | C2' | C3' | H3' | 157.6° | 118.5° |
| C2' | C1' | O4' | C4' | 13.6° | 40.4° |
| C2' | C1' | O4' | N1 | 119.3° | 118.9° |
| C2' | C1' | O4' | H1' | 120.5° | 118.9° |
| C2' | C1' | N1 | H1' | 120.7° | 122.3° |
| C2' | C1' | N1 | C5 | 77.9° | 86.6° |
| C2' | C1' | N1 | C2 | 101.7° | 93.5° |
| H2' | C2' | O2' | H3 | 144.9° | 61.1° |
| H2' | C2' | C3' | O3' | 152.8° | 122.7° |
| H2' | C2' | C3' | C4' | 88.9° | 118.6° |
| H2' | C2' | C3' | H3' | 34.1° | 0.1° |
| H2' | C2' | C1' | O4' | 91.3° | 94.7° |
| H2' | C2' | C1' | N1 | 25.4° | 24.2° |
| H2' | C2' | C1' | H1' | 145.7° | 146.4° |
| O3' | C3' | C4' | H3' | 118.7° | 122.6° |
| O3' | C3' | C4' | C5' | 148.7° | 98.3° |
| O3' | C3' | C4' | O4' | 91.0° | 142.8° |
| O3' | C3' | C4' | H4' | 31.9° | 24.0° |
| C4' | C3' | O3' | H1 | 55.4° | 180.0° |
| C3' | C4' | C5' | O4' | 118.6° | 115.5° |
| C3' | C4' | C5' | H4' | 118.6° | 122.4° |
| C3' | C4' | C5' | H5'1 | 170.4° | 58.0° |
| C3' | C4' | C5' | H5'2 | 69.4° | 61.9° |
| C3' | C4' | O4' | H4' | 118.7° | 118.9° |
| C3' | C4' | O4' | C1' | 9.0° | 40.5° |
| H3' | C3' | O3' | H1 | 178.9° | 57.4° |
| H3' | C3' | C4' | C5' | 30.0° | 24.2° |
| H3' | C3' | C4' | O4' | 150.3° | 94.7° |
| H3' | C3' | C4' | H4' | 86.8° | 146.5° |
| C4' | C5' | H5'1 | H5'2 | 119.9° | 119.9° |
| C5' | C4' | O4' | H4' | 117.0° | 122.1° |
| C5' | C4' | O4' | C1' | 115.3° | 159.5° |
| H5'1 | C5' | C4' | O4' | 51.8° | 173.5° |
| H5'1 | C5' | C4' | H4' | 71.0° | 64.3° |
| H5'2 | C5' | C4' | O4' | 172.0° | 53.6° |
| H5'2 | C5' | C4' | H4' | 49.1° | 175.7° |
| C4' | O4' | C1' | N1 | 133.0° | 159.3° |
| C4' | O4' | C1' | H1' | 106.9° | 78.5° |
| H4' | C4' | O4' | C1' | 127.8° | 78.4° |
| O4' | C1' | N1 | H1' | 123.0° | 122.2° |
| O4' | C1' | N1 | C5 | 165.8° | 157.9° |
| O4' | C1' | N1 | C2 | 14.7° | 22.0° |
| C1' | N1 | C5 | C2 | 179.6° | 180.0° |
| C1' | N1 | C5 | C4 | 179.3° | 179.7° |
| C1' | N1 | C5 | N5 | 0.3° | 0.0° |
| C1' | N1 | C2 | N3 | 179.4° | 180.0° |
| C1' | N1 | C2 | H2 | 0.6° | 0.0° |
| H1' | C1' | N1 | C5 | 42.8° | 35.7° |
| H1' | C1' | N1 | C2 | 137.7° | 144.2° |
| N1 | C5 | C4 | N5 | 179.6° | 179.7° |
| N1 | C5 | C4 | N3 | 0.4° | 0.5° |
| N1 | C5 | C4 | C6 | 177.5° | 180.0° |
| C5 | N1 | C2 | N3 | 0.2° | 0.0° |
| C5 | N1 | C2 | H2 | 179.8° | 180.0° |
| N1 | C5 | N5 | HN51 | 155.1° | 0.0° |
| N1 | C5 | N5 | HN52 | 84.9° | 179.7° |
| C2 | N1 | C5 | C4 | 0.3° | 0.3° |
| C2 | N1 | C5 | N5 | 179.9° | 180.0° |
| N1 | C2 | N3 | C4 | 0.1° | 0.3° |
| N1 | C2 | N3 | H2 | 180.0° | 179.9° |
| C5 | C4 | N3 | C6 | 177.9° | 179.5° |
| C5 | C4 | N3 | C2 | 0.3° | 0.5° |
| C4 | C5 | N5 | HN51 | 24.4° | 179.7° |
| C4 | C5 | N5 | HN52 | 95.6° | 0.6° |
| C5 | C4 | C6 | O7 | 3.8° | 179.5° |
| C5 | C4 | C6 | O8 | 175.7° | 0.6° |
| N5 | C5 | C4 | N3 | 180.0° | 179.8° |
| N5 | C5 | C4 | C6 | 2.1° | 0.3° |
| C5 | N5 | HN51 | HN52 | 120.0° | 179.7° |
| C4 | N3 | C2 | H2 | 179.9° | 179.7° |
| N3 | C4 | C6 | O7 | 178.5° | 0.1° |
| N3 | C4 | C6 | O8 | 2.0° | 180.0° |
| C6 | C4 | N3 | C2 | 177.7° | 180.0° |
| C4 | C6 | O7 | O8 | 179.4° | 180.0° |
| C4 | C6 | O7 | HO7 | 179.4° | 180.0° |
| O8 | C6 | O7 | HO7 | 0.0° | 0.0° |
