C2P
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| N1 | C2 | sing | 1.35Å | 1.35Å | |
| N1 | C6 | sing | 1.36Å | 1.32Å | |
| N1 | C1' | sing | 1.46Å | 1.42Å | |
| C2 | N3 | sing | 1.33Å | 1.34Å | |
| C2 | O2 | doub | 1.22Å | 1.19Å | |
| N3 | C4 | doub | 1.33Å | 1.33Å | |
| C4 | C5 | sing | 1.41Å | 1.40Å | |
| C4 | N4 | sing | 1.38Å | 1.33Å | |
| C5 | C6 | doub | 1.35Å | 1.33Å | |
| C5 | H5 | sing | 1.08Å | 1.10Å | |
| C6 | H6 | sing | 1.08Å | 1.10Å | |
| N4 | HN41 | sing | 0.97Å | 1.02Å | |
| N4 | HN42 | sing | 0.97Å | 1.02Å | |
| C1' | C2' | sing | 1.54Å | 1.55Å | |
| C1' | O4' | sing | 1.45Å | 1.45Å | |
| C1' | H1' | sing | 1.09Å | 1.11Å | |
| C2' | O2' | sing | 1.43Å | 1.48Å | |
| C2' | C3' | sing | 1.55Å | 1.59Å | |
| C2' | H2' | sing | 1.09Å | 1.11Å | |
| O2' | P | sing | 1.61Å | 1.53Å | |
| C3' | C4' | sing | 1.54Å | 1.56Å | |
| C3' | O3' | sing | 1.43Å | 1.44Å | |
| C3' | H3' | sing | 1.09Å | 1.11Å | |
| C4' | O4' | sing | 1.44Å | 1.45Å | |
| C4' | C5' | sing | 1.53Å | 1.53Å | |
| C4' | H4' | sing | 1.09Å | 1.12Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| C5' | O5' | sing | 1.43Å | 1.42Å | |
| C5' | H5'1 | sing | 1.09Å | 1.12Å | |
| C5' | H5'2 | sing | 1.09Å | 1.12Å | |
| O5' | HO5' | sing | 0.97Å | 0.95Å | |
| P | O1P | doub | 1.48Å | 1.52Å | |
| P | O2P | sing | 1.61Å | 1.46Å | |
| P | O3P | sing | 1.61Å | 1.53Å | |
| O2P | HOP2 | sing | 0.97Å | 0.95Å | |
| O3P | HOP3 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| C2 | N1 | C6 | 120.5° | 120.3° |
| C2 | N1 | C1' | 112.4° | 119.9° |
| N1 | C2 | N3 | 115.2° | 121.1° |
| N1 | C2 | O2 | 116.1° | 119.5° |
| C6 | N1 | C1' | 126.0° | 119.8° |
| N1 | C6 | C5 | 124.0° | 119.3° |
| N1 | C6 | H6 | 117.5° | 120.3° |
| N1 | C1' | C2' | 116.4° | 110.4° |
| N1 | C1' | O4' | 104.1° | 110.3° |
| N1 | C1' | H1' | 107.2° | 110.4° |
| N3 | C2 | O2 | 128.5° | 119.4° |
| C2 | N3 | C4 | 127.0° | 120.7° |
| N3 | C4 | C5 | 115.8° | 119.6° |
| N3 | C4 | N4 | 126.3° | 120.2° |
| C5 | C4 | N4 | 117.9° | 120.2° |
| C4 | C5 | C6 | 117.2° | 119.0° |
| C4 | C5 | H5 | 123.9° | 120.5° |
| C4 | N4 | HN41 | 126.2° | 120.0° |
| C4 | N4 | HN42 | 106.3° | 120.0° |
| C6 | C5 | H5 | 118.9° | 120.6° |
| C5 | C6 | H6 | 118.5° | 120.4° |
| HN41 | N4 | HN42 | 106.3° | 120.0° |
| C2' | C1' | O4' | 104.6° | 104.9° |
| C2' | C1' | H1' | 106.6° | 110.4° |
| C1' | C2' | O2' | 119.5° | 110.8° |
| C1' | C2' | C3' | 99.9° | 104.0° |
| C1' | C2' | H2' | 109.4° | 110.5° |
| O4' | C1' | H1' | 118.4° | 110.4° |
| C1' | O4' | C4' | 110.1° | 105.3° |
| O2' | C2' | C3' | 109.0° | 110.4° |
| O2' | C2' | H2' | 100.4° | 110.4° |
| C2' | O2' | P | 132.1° | 106.8° |
| C3' | C2' | H2' | 119.9° | 110.6° |
| C2' | C3' | C4' | 96.4° | 104.1° |
| C2' | C3' | O3' | 112.3° | 110.6° |
| C2' | C3' | H3' | 114.6° | 110.6° |
| O2' | P | O1P | 109.0° | 109.4° |
| O2' | P | O2P | 107.0° | 109.5° |
| O2' | P | O3P | 105.0° | 109.5° |
| C4' | C3' | O3' | 105.3° | 110.5° |
| C4' | C3' | H3' | 120.8° | 110.4° |
| C3' | C4' | O4' | 101.8° | 104.8° |
| C3' | C4' | C5' | 112.1° | 110.5° |
| C3' | C4' | H4' | 122.4° | 110.3° |
| O3' | C3' | H3' | 107.0° | 110.5° |
| C3' | O3' | HO3' | 112.3° | 106.8° |
| O4' | C4' | C5' | 127.8° | 110.4° |
| O4' | C4' | H4' | 103.5° | 110.4° |
| C5' | C4' | H4' | 90.8° | 110.3° |
| C4' | C5' | O5' | 102.2° | 109.5° |
| C4' | C5' | H5'1 | 115.0° | 109.5° |
| C4' | C5' | H5'2 | 115.0° | 109.4° |
| O5' | C5' | H5'1 | 115.0° | 109.5° |
| O5' | C5' | H5'2 | 115.0° | 109.4° |
| C5' | O5' | HO5' | 102.2° | 106.9° |
| H5'1 | C5' | H5'2 | 95.4° | 109.5° |
| O1P | P | O2P | 117.9° | 109.4° |
| O1P | P | O3P | 105.7° | 109.5° |
| O2P | P | O3P | 111.4° | 109.5° |
| P | O2P | HOP2 | 107.1° | 106.8° |
| P | O3P | HOP3 | 105.0° | 106.8° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| C2 | N1 | C6 | C1' | 167.4° | 180.0° |
| N1 | C2 | N3 | O2 | 175.5° | 179.9° |
| N1 | C2 | N3 | C4 | 5.3° | 0.1° |
| C2 | N1 | C6 | C5 | 2.6° | 0.3° |
| C2 | N1 | C6 | H6 | 177.4° | 180.0° |
| C2 | N1 | C1' | C2' | 111.1° | 58.4° |
| C2 | N1 | C1' | O4' | 134.4° | 57.0° |
| C2 | N1 | C1' | H1' | 8.1° | 179.2° |
| C6 | N1 | C2 | N3 | 5.8° | 0.0° |
| C6 | N1 | C2 | O2 | 178.1° | 179.9° |
| N1 | C6 | C5 | C4 | 1.8° | 0.5° |
| N1 | C6 | C5 | H6 | 180.0° | 179.7° |
| N1 | C6 | C5 | H5 | 178.2° | 180.0° |
| C6 | N1 | C1' | C2' | 80.6° | 121.6° |
| C6 | N1 | C1' | O4' | 33.9° | 123.0° |
| C6 | N1 | C1' | H1' | 160.2° | 0.8° |
| C1' | N1 | C2 | N3 | 174.8° | 179.9° |
| C1' | N1 | C2 | O2 | 9.1° | 0.0° |
| C1' | N1 | C6 | C5 | 170.0° | 179.7° |
| C1' | N1 | C6 | H6 | 10.0° | 0.0° |
| N1 | C1' | C2' | O4' | 114.2° | 118.8° |
| N1 | C1' | C2' | H1' | 119.5° | 122.3° |
| N1 | C1' | O4' | H1' | 118.8° | 122.2° |
| N1 | C1' | C2' | O2' | 158.9° | 98.6° |
| N1 | C1' | C2' | C3' | 82.5° | 142.8° |
| N1 | C1' | C2' | H2' | 44.2° | 24.1° |
| N1 | C1' | O4' | C4' | 121.5° | 159.3° |
| C2 | N3 | C4 | C5 | 1.2° | 0.2° |
| C2 | N3 | C4 | N4 | 178.3° | 179.9° |
| O2 | C2 | N3 | C4 | 179.2° | 180.0° |
| N3 | C4 | C5 | N4 | 179.5° | 179.7° |
| N3 | C4 | C5 | C6 | 2.5° | 0.5° |
| N3 | C4 | C5 | H5 | 177.5° | 180.0° |
| N3 | C4 | N4 | HN41 | 180.0° | 0.0° |
| N3 | C4 | N4 | HN42 | 54.8° | 179.7° |
| C4 | C5 | C6 | H5 | 180.0° | 179.5° |
| C4 | C5 | C6 | H6 | 178.3° | 179.7° |
| C5 | C4 | N4 | HN41 | 0.5° | 179.7° |
| C5 | C4 | N4 | HN42 | 124.7° | 0.6° |
| N4 | C4 | C5 | C6 | 178.0° | 179.8° |
| N4 | C4 | C5 | H5 | 2.0° | 0.3° |
| C4 | N4 | HN41 | HN42 | 125.2° | 179.7° |
| H5 | C5 | C6 | H6 | 1.8° | 0.3° |
| C2' | C1' | O4' | H1' | 118.5° | 118.9° |
| C1' | C2' | O2' | C3' | 113.8° | 114.7° |
| C1' | C2' | O2' | H2' | 119.5° | 122.7° |
| C1' | C2' | C3' | H2' | 119.3° | 118.6° |
| C1' | C2' | O2' | P | 146.7° | 123.8° |
| C1' | C2' | C3' | C4' | 47.9° | 0.0° |
| C1' | C2' | C3' | O3' | 157.3° | 118.7° |
| C1' | C2' | C3' | H3' | 80.3° | 118.6° |
| C2' | C1' | O4' | C4' | 1.1° | 40.5° |
| O4' | C1' | C2' | O2' | 86.9° | 142.6° |
| O4' | C1' | C2' | C3' | 31.7° | 24.0° |
| O4' | C1' | C2' | H2' | 158.4° | 94.7° |
| C1' | O4' | C4' | C3' | 30.7° | 40.5° |
| C1' | O4' | C4' | C5' | 161.1° | 159.5° |
| C1' | O4' | C4' | H4' | 97.1° | 78.3° |
| H1' | C1' | C2' | O2' | 39.4° | 23.7° |
| H1' | C1' | C2' | C3' | 157.9° | 94.9° |
| H1' | C1' | C2' | H2' | 75.4° | 146.4° |
| H1' | C1' | O4' | C4' | 119.7° | 78.4° |
| O2' | C2' | C3' | H2' | 114.6° | 122.5° |
| O2' | C2' | C3' | C4' | 78.2° | 118.8° |
| O2' | C2' | C3' | O3' | 31.2° | 0.1° |
| O2' | C2' | C3' | H3' | 153.6° | 122.6° |
| C2' | O2' | P | O1P | 48.2° | 60.0° |
| C2' | O2' | P | O2P | 176.8° | 180.0° |
| C2' | O2' | P | O3P | 64.6° | 60.0° |
| C3' | C2' | O2' | P | 99.5° | 121.5° |
| C2' | C3' | C4' | O3' | 115.3° | 118.8° |
| C2' | C3' | C4' | H3' | 123.7° | 118.7° |
| C2' | C3' | O3' | H3' | 126.6° | 122.8° |
| C2' | C3' | C4' | O4' | 48.0° | 24.0° |
| C2' | C3' | C4' | C5' | 172.5° | 142.9° |
| C2' | C3' | C4' | H4' | 66.5° | 94.9° |
| C2' | C3' | O3' | HO3' | 180.0° | 176.2° |
| H2' | C2' | O2' | P | 27.3° | 1.1° |
| H2' | C2' | C3' | C4' | 167.2° | 118.6° |
| H2' | C2' | C3' | O3' | 83.4° | 122.7° |
| H2' | C2' | C3' | H3' | 39.0° | 0.0° |
| O2' | P | O1P | O2P | 122.3° | 120.0° |
| O2' | P | O1P | O3P | 112.4° | 120.0° |
| O2' | P | O2P | O3P | 114.3° | 120.0° |
| O2' | P | O2P | HOP2 | 180.0° | 179.9° |
| O2' | P | O3P | HOP3 | 179.9° | 60.1° |
| C4' | C3' | O3' | H3' | 129.7° | 122.5° |
| C3' | C4' | O4' | C5' | 130.3° | 119.0° |
| C3' | C4' | O4' | H4' | 127.8° | 118.8° |
| C3' | C4' | C5' | H4' | 125.8° | 122.3° |
| C4' | C3' | O3' | HO3' | 76.3° | 61.5° |
| C3' | C4' | C5' | O5' | 77.0° | 176.9° |
| C3' | C4' | C5' | H5'1 | 157.6° | 63.0° |
| C3' | C4' | C5' | H5'2 | 48.3° | 57.0° |
| O3' | C3' | C4' | O4' | 163.3° | 142.8° |
| O3' | C3' | C4' | C5' | 57.3° | 98.3° |
| O3' | C3' | C4' | H4' | 48.7° | 23.9° |
| H3' | C3' | C4' | O4' | 75.7° | 94.6° |
| H3' | C3' | C4' | C5' | 63.7° | 24.3° |
| H3' | C3' | C4' | H4' | 169.7° | 146.5° |
| H3' | C3' | O3' | HO3' | 53.4° | 61.1° |
| O4' | C4' | C5' | H4' | 107.9° | 122.3° |
| O4' | C4' | C5' | O5' | 49.3° | 61.4° |
| O4' | C4' | C5' | H5'1 | 76.0° | 178.5° |
| O4' | C4' | C5' | H5'2 | 174.6° | 58.5° |
| C4' | C5' | O5' | H5'1 | 125.3° | 120.1° |
| C4' | C5' | O5' | H5'2 | 125.3° | 119.9° |
| C4' | C5' | H5'1 | H5'2 | 120.8° | 120.0° |
| C4' | C5' | O5' | HO5' | 180.0° | 180.0° |
| H4' | C4' | C5' | O5' | 157.2° | 60.9° |
| H4' | C4' | C5' | H5'1 | 31.9° | 59.2° |
| H4' | C4' | C5' | H5'2 | 77.5° | 179.2° |
| O5' | C5' | H5'1 | H5'2 | 120.8° | 119.9° |
| H5'1 | C5' | O5' | HO5' | 54.7° | 59.9° |
| H5'2 | C5' | O5' | HO5' | 54.7° | 60.1° |
| O1P | P | O2P | O3P | 122.5° | 120.0° |
| O1P | P | O2P | HOP2 | 56.8° | 60.0° |
| O1P | P | O3P | HOP3 | 64.9° | 180.0° |
| O2P | P | O3P | HOP3 | 64.4° | 60.0° |
| O3P | P | O2P | HOP2 | 65.7° | 60.0° |
