C2L
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| OP3 | P | sing | 1.62Å | 16.59Å | |
| OP3 | HOP3 | sing | 0.98Å | 0.95Å | |
| P | OP1 | doub | 1.50Å | 1.48Å | |
| P | OP2 | sing | 1.62Å | 1.48Å | |
| P | O5' | sing | 1.62Å | 1.61Å | |
| OP2 | HOP2 | sing | 0.98Å | 0.95Å | |
| O5' | C5' | sing | 1.42Å | 1.41Å | |
| C5' | C4' | sing | 1.52Å | 1.53Å | |
| C5' | H5' | sing | 1.09Å | 1.09Å | |
| C5' | H5'' | sing | 1.09Å | 1.09Å | |
| C4' | O4' | sing | 1.44Å | 1.42Å | |
| C4' | C3' | sing | 1.52Å | 1.53Å | |
| C4' | H4' | sing | 1.09Å | 1.09Å | |
| O4' | C1' | sing | 1.44Å | 1.42Å | |
| C3' | O3' | sing | 1.43Å | 1.42Å | |
| C3' | C2' | sing | 1.51Å | 1.53Å | |
| C3' | H3' | sing | 1.09Å | 1.09Å | |
| O3' | CA' | sing | 1.42Å | 1.42Å | |
| C2' | O2' | sing | 1.41Å | 1.43Å | |
| C2' | C1' | sing | 1.52Å | 1.52Å | |
| C2' | H2' | sing | 1.10Å | 1.09Å | |
| O2' | HO2' | sing | 0.97Å | 0.95Å | |
| C1' | N1 | sing | 1.43Å | 1.48Å | |
| C1' | H1' | sing | 1.09Å | 1.07Å | |
| N1 | C2 | sing | 1.41Å | 1.40Å | |
| N1 | C6 | sing | 1.39Å | 1.36Å | |
| C2 | O2 | doub | 1.23Å | 1.23Å | |
| C2 | N3 | sing | 1.38Å | 1.37Å | |
| N3 | C4 | doub | 1.31Å | 1.34Å | |
| C4 | N4 | sing | 1.38Å | 1.34Å | |
| C4 | C5 | sing | 1.50Å | 1.45Å | |
| N4 | H41 | sing | 0.99Å | 1.02Å | |
| N4 | H42 | sing | 0.99Å | 1.01Å | |
| C5 | C6 | doub | 1.34Å | 1.35Å | |
| C5 | C7 | sing | 1.49Å | 1.51Å | |
| C6 | H6 | sing | 1.09Å | 1.07Å | |
| CA' | CB' | sing | 1.52Å | 1.53Å | |
| CA' | HA'1 | sing | 1.09Å | 1.09Å | |
| CA' | HA'2 | sing | 1.09Å | 1.09Å | |
| CB' | OC' | sing | 1.42Å | 1.42Å | |
| CB' | HB'1 | sing | 1.09Å | 1.09Å | |
| CB' | HB'2 | sing | 1.09Å | 1.09Å | |
| OC' | CD' | sing | 1.42Å | 1.42Å | |
| CD' | HD'1 | sing | 1.09Å | 1.09Å | |
| CD' | HD'2 | sing | 1.09Å | 1.09Å | |
| CD' | HD'3 | sing | 1.09Å | 1.09Å | |
| C7 | H71 | sing | 1.09Å | 1.09Å | |
| C7 | H72 | sing | 1.09Å | 1.11Å | |
| C7 | H73 | sing | 1.09Å | 1.09Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| P | OP3 | HOP3 | 148.3° | 119.0° |
| OP3 | P | OP1 | 148.2° | 115.3° |
| OP3 | P | OP2 | 90.6° | 103.3° |
| OP3 | P | O5' | 47.5° | 103.8° |
| OP1 | P | OP2 | 119.6° | 114.9° |
| OP1 | P | O5' | 108.9° | 115.0° |
| OP2 | P | O5' | 107.2° | 102.9° |
| P | OP2 | HOP2 | 90.6° | 119.0° |
| P | O5' | C5' | 121.3° | 118.5° |
| O5' | C5' | C4' | 110.4° | 108.6° |
| O5' | C5' | H5' | 109.3° | 109.2° |
| O5' | C5' | H5'' | 109.6° | 109.3° |
| C4' | C5' | H5' | 109.7° | 110.1° |
| C4' | C5' | H5'' | 108.7° | 110.1° |
| C5' | C4' | O4' | 110.7° | 108.2° |
| C5' | C4' | C3' | 115.3° | 113.3° |
| C5' | C4' | H4' | 108.6° | 109.3° |
| H5' | C5' | H5'' | 109.2° | 109.6° |
| O4' | C4' | C3' | 105.4° | 105.9° |
| O4' | C4' | H4' | 108.1° | 107.7° |
| C4' | O4' | C1' | 108.9° | 109.2° |
| C3' | C4' | H4' | 108.6° | 112.2° |
| C4' | C3' | O3' | 113.0° | 107.9° |
| C4' | C3' | C2' | 99.7° | 102.1° |
| C4' | C3' | H3' | 110.0° | 114.5° |
| O4' | C1' | C2' | 107.1° | 106.5° |
| O4' | C1' | N1 | 113.3° | 109.0° |
| O4' | C1' | H1' | 106.9° | 108.9° |
| O3' | C3' | C2' | 114.2° | 110.3° |
| O3' | C3' | H3' | 110.2° | 107.8° |
| C3' | O3' | CA' | 112.9° | 111.3° |
| C2' | C3' | H3' | 109.1° | 114.0° |
| C3' | C2' | O2' | 109.6° | 112.3° |
| C3' | C2' | C1' | 102.0° | 102.0° |
| C3' | C2' | H2' | 109.8° | 110.1° |
| O3' | CA' | CB' | 109.9° | 109.1° |
| O3' | CA' | HA'1 | 110.2° | 108.1° |
| O3' | CA' | HA'2 | 109.8° | 108.3° |
| O2' | C2' | C1' | 109.1° | 112.6° |
| O2' | C2' | H2' | 115.1° | 108.6° |
| C2' | O2' | HO2' | 109.6° | 107.1° |
| C1' | C2' | H2' | 110.4° | 111.1° |
| C2' | C1' | N1 | 114.0° | 112.5° |
| C2' | C1' | H1' | 111.2° | 112.6° |
| N1 | C1' | H1' | 104.2° | 107.3° |
| C1' | N1 | C2 | 119.9° | 122.0° |
| C1' | N1 | C6 | 119.6° | 118.7° |
| C2 | N1 | C6 | 120.4° | 119.3° |
| N1 | C2 | O2 | 121.3° | 121.0° |
| N1 | C2 | N3 | 118.8° | 118.8° |
| N1 | C6 | C5 | 121.9° | 123.4° |
| N1 | C6 | H6 | 114.5° | 115.3° |
| O2 | C2 | N3 | 120.0° | 120.2° |
| C2 | N3 | C4 | 121.3° | 121.5° |
| N3 | C4 | N4 | 117.4° | 118.6° |
| N3 | C4 | C5 | 120.4° | 121.5° |
| N4 | C4 | C5 | 122.2° | 119.8° |
| C4 | N4 | H41 | 119.0° | 117.9° |
| C4 | N4 | H42 | 120.4° | 117.9° |
| C4 | C5 | C6 | 117.2° | 115.5° |
| C4 | C5 | C7 | 123.4° | 120.6° |
| H41 | N4 | H42 | 120.6° | 124.2° |
| C6 | C5 | C7 | 119.4° | 123.9° |
| C5 | C6 | H6 | 123.6° | 121.4° |
| C5 | C7 | H71 | 106.5° | 109.9° |
| C5 | C7 | H72 | 110.3° | 109.9° |
| C5 | C7 | H73 | 109.8° | 109.9° |
| CB' | CA' | HA'1 | 109.3° | 111.1° |
| CB' | CA' | HA'2 | 108.4° | 110.5° |
| CA' | CB' | OC' | 109.6° | 109.0° |
| CA' | CB' | HB'1 | 109.3° | 111.1° |
| CA' | CB' | HB'2 | 108.7° | 110.5° |
| HA'1 | CA' | HA'2 | 109.2° | 109.6° |
| OC' | CB' | HB'1 | 110.5° | 108.1° |
| OC' | CB' | HB'2 | 109.5° | 108.3° |
| CB' | OC' | CD' | 112.2° | 111.5° |
| HB'1 | CB' | HB'2 | 109.3° | 109.7° |
| OC' | CD' | HD'1 | 110.1° | 109.5° |
| OC' | CD' | HD'2 | 109.0° | 109.5° |
| OC' | CD' | HD'3 | 110.1° | 109.0° |
| HD'1 | CD' | HD'2 | 108.9° | 110.1° |
| HD'1 | CD' | HD'3 | 109.7° | 109.3° |
| HD'2 | CD' | HD'3 | 109.0° | 109.4° |
| H71 | C7 | H72 | 108.8° | 109.2° |
| H71 | C7 | H73 | 110.2° | 109.2° |
| H72 | C7 | H73 | 111.2° | 108.7° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| OP3 | P | OP1 | OP2 | 159.9° | 120.0° |
| OP3 | P | OP1 | O5' | 36.3° | 120.7° |
| OP3 | P | OP2 | O5' | 45.2° | 107.7° |
| OP3 | P | OP2 | HOP2 | 180.0° | 78.5° |
| OP3 | P | O5' | C5' | 114.8° | 53.2° |
| HOP3 | OP3 | P | OP1 | 180.0° | 48.7° |
| HOP3 | OP3 | P | OP2 | 17.3° | 77.5° |
| HOP3 | OP3 | P | O5' | 130.5° | 175.4° |
| OP1 | P | OP2 | O5' | 124.4° | 125.8° |
| OP1 | P | OP2 | HOP2 | 10.4° | 48.0° |
| OP1 | P | O5' | C5' | 40.1° | 179.9° |
| OP2 | P | O5' | C5' | 170.8° | 54.2° |
| O5' | P | OP2 | HOP2 | 134.8° | 173.8° |
| P | O5' | C5' | C4' | 162.8° | 180.0° |
| P | O5' | C5' | H5' | 76.4° | 59.9° |
| P | O5' | C5' | H5'' | 43.2° | 59.9° |
| O5' | C5' | C4' | H5' | 120.5° | 119.5° |
| O5' | C5' | C4' | H5'' | 120.2° | 119.6° |
| O5' | C5' | H5' | H5'' | 119.8° | 119.6° |
| O5' | C5' | C4' | O4' | 65.2° | 62.4° |
| O5' | C5' | C4' | C3' | 54.3° | 179.5° |
| O5' | C5' | C4' | H4' | 176.3° | 54.6° |
| C4' | C5' | H5' | H5'' | 119.0° | 121.2° |
| C5' | C4' | O4' | C3' | 125.3° | 121.7° |
| C5' | C4' | O4' | H4' | 118.8° | 118.1° |
| C5' | C4' | C3' | H4' | 122.0° | 124.4° |
| C5' | C4' | O4' | C1' | 151.0° | 109.0° |
| C5' | C4' | C3' | O3' | 76.5° | 156.8° |
| C5' | C4' | C3' | C2' | 161.8° | 86.9° |
| C5' | C4' | C3' | H3' | 47.2° | 36.8° |
| H5' | C5' | C4' | O4' | 174.3° | 57.1° |
| H5' | C5' | C4' | C3' | 66.2° | 60.0° |
| H5' | C5' | C4' | H4' | 55.8° | 174.1° |
| H5'' | C5' | C4' | O4' | 55.0° | 178.0° |
| H5'' | C5' | C4' | C3' | 174.5° | 60.9° |
| H5'' | C5' | C4' | H4' | 63.5° | 65.0° |
| O4' | C4' | C3' | H4' | 115.6° | 117.2° |
| O4' | C4' | C3' | O3' | 161.1° | 84.7° |
| O4' | C4' | C3' | C2' | 39.4° | 31.5° |
| O4' | C4' | C3' | H3' | 75.2° | 155.2° |
| C4' | O4' | C1' | C2' | 0.7° | 11.3° |
| C4' | O4' | C1' | N1 | 127.3° | 132.9° |
| C4' | O4' | C1' | H1' | 118.6° | 110.3° |
| C3' | C4' | O4' | C1' | 25.7° | 12.8° |
| C4' | C3' | O3' | C2' | 113.1° | 110.7° |
| C4' | C3' | O3' | H3' | 123.6° | 124.2° |
| C4' | C3' | C2' | H3' | 115.3° | 124.0° |
| C4' | C3' | O3' | CA' | 178.1° | 69.2° |
| C4' | C3' | C2' | O2' | 78.3° | 158.0° |
| C4' | C3' | C2' | C1' | 37.3° | 37.1° |
| C4' | C3' | C2' | H2' | 154.4° | 80.9° |
| H4' | C4' | O4' | C1' | 90.3° | 133.0° |
| H4' | C4' | C3' | O3' | 45.5° | 32.5° |
| H4' | C4' | C3' | C2' | 76.2° | 148.7° |
| H4' | C4' | C3' | H3' | 169.2° | 87.6° |
| O4' | C1' | C2' | C3' | 24.1° | 30.7° |
| O4' | C1' | C2' | O2' | 91.8° | 151.3° |
| O4' | C1' | C2' | N1 | 126.1° | 119.3° |
| O4' | C1' | C2' | H1' | 116.4° | 119.3° |
| O4' | C1' | C2' | H2' | 140.8° | 86.6° |
| O4' | C1' | N1 | H1' | 115.7° | 117.7° |
| O4' | C1' | N1 | C2 | 143.9° | 147.8° |
| O4' | C1' | N1 | C6 | 36.2° | 32.3° |
| O3' | C3' | C2' | H3' | 123.9° | 121.5° |
| O3' | C3' | C2' | O2' | 42.6° | 43.5° |
| O3' | C3' | C2' | C1' | 158.2° | 77.4° |
| O3' | C3' | C2' | H2' | 84.7° | 164.6° |
| C3' | O3' | CA' | CB' | 177.8° | 179.0° |
| C3' | O3' | CA' | HA'1 | 57.3° | 60.0° |
| C3' | O3' | CA' | HA'2 | 63.1° | 58.8° |
| C2' | C3' | O3' | CA' | 68.7° | 180.0° |
| C3' | C2' | O2' | C1' | 111.0° | 114.5° |
| C3' | C2' | O2' | H2' | 124.3° | 122.0° |
| C3' | C2' | C1' | H2' | 116.7° | 117.3° |
| C3' | C2' | O2' | HO2' | 180.0° | 168.8° |
| C3' | C2' | C1' | N1 | 102.0° | 150.0° |
| C3' | C2' | C1' | H1' | 140.6° | 88.5° |
| H3' | C3' | O3' | CA' | 54.6° | 54.9° |
| H3' | C3' | C2' | O2' | 166.5° | 78.0° |
| H3' | C3' | C2' | C1' | 77.9° | 161.1° |
| H3' | C3' | C2' | H2' | 39.2° | 43.1° |
| O3' | CA' | CB' | HA'1 | 121.0° | 119.1° |
| O3' | CA' | CB' | HA'2 | 120.0° | 118.9° |
| O3' | CA' | HA'1 | HA'2 | 120.7° | 117.8° |
| O3' | CA' | CB' | OC' | 67.4° | 60.9° |
| O3' | CA' | CB' | HB'1 | 53.8° | 180.0° |
| O3' | CA' | CB' | HB'2 | 173.0° | 58.0° |
| O2' | C2' | C1' | H2' | 127.4° | 122.1° |
| O2' | C2' | C1' | N1 | 142.1° | 89.4° |
| O2' | C2' | C1' | H1' | 24.6° | 32.1° |
| C1' | C2' | O2' | HO2' | 69.0° | 54.3° |
| C2' | C1' | N1 | H1' | 121.4° | 124.4° |
| C2' | C1' | N1 | C2 | 93.2° | 94.4° |
| C2' | C1' | N1 | C6 | 86.7° | 85.6° |
| H2' | C2' | O2' | HO2' | 55.6° | 69.2° |
| H2' | C2' | C1' | N1 | 14.7° | 32.7° |
| H2' | C2' | C1' | H1' | 102.7° | 154.2° |
| C1' | N1 | C2 | C6 | 179.9° | 180.0° |
| C1' | N1 | C2 | O2 | 0.2° | 0.0° |
| C1' | N1 | C2 | N3 | 179.9° | 180.0° |
| C1' | N1 | C6 | C5 | 179.7° | 180.0° |
| C1' | N1 | C6 | H6 | 0.4° | 0.0° |
| H1' | C1' | N1 | C2 | 28.2° | 30.0° |
| H1' | C1' | N1 | C6 | 151.9° | 150.0° |
| N1 | C2 | O2 | N3 | 179.9° | 180.0° |
| N1 | C2 | N3 | C4 | 0.3° | 0.0° |
| C2 | N1 | C6 | C5 | 0.4° | 0.0° |
| C2 | N1 | C6 | H6 | 179.5° | 180.0° |
| C6 | N1 | C2 | O2 | 179.9° | 180.0° |
| C6 | N1 | C2 | N3 | 0.0° | 0.0° |
| N1 | C6 | C5 | C4 | 0.4° | 0.0° |
| N1 | C6 | C5 | H6 | 179.8° | 180.0° |
| N1 | C6 | C5 | C7 | 179.7° | 180.0° |
| O2 | C2 | N3 | C4 | 179.6° | 180.0° |
| C2 | N3 | C4 | N4 | 179.6° | 180.0° |
| C2 | N3 | C4 | C5 | 0.2° | 0.1° |
| N3 | C4 | N4 | C5 | 179.9° | 180.0° |
| N3 | C4 | N4 | H41 | 0.1° | 154.6° |
| N3 | C4 | N4 | H42 | 179.9° | 25.5° |
| N3 | C4 | C5 | C6 | 0.1° | 0.0° |
| N3 | C4 | C5 | C7 | 180.0° | 179.9° |
| C4 | N4 | H41 | H42 | 179.8° | 179.9° |
| N4 | C4 | C5 | C6 | 180.0° | 180.0° |
| N4 | C4 | C5 | C7 | 0.2° | 0.0° |
| C5 | C4 | N4 | H41 | 180.0° | 25.3° |
| C5 | C4 | N4 | H42 | 0.2° | 154.6° |
| C4 | C5 | C6 | C7 | 179.8° | 180.0° |
| C4 | C5 | C6 | H6 | 179.4° | 180.0° |
| C4 | C5 | C7 | H71 | 177.5° | 161.8° |
| C4 | C5 | C7 | H72 | 64.6° | 78.0° |
| C4 | C5 | C7 | H73 | 58.2° | 41.6° |
| C6 | C5 | C7 | H71 | 2.3° | 18.2° |
| C6 | C5 | C7 | H72 | 115.5° | 102.0° |
| C6 | C5 | C7 | H73 | 121.6° | 138.4° |
| C7 | C5 | C6 | H6 | 0.4° | 0.0° |
| C5 | C7 | H71 | H72 | 118.8° | 120.6° |
| C5 | C7 | H71 | H73 | 119.0° | 120.6° |
| C5 | C7 | H72 | H73 | 122.0° | 120.3° |
| CB' | CA' | HA'1 | HA'2 | 118.5° | 122.5° |
| CA' | CB' | OC' | HB'1 | 120.5° | 121.0° |
| CA' | CB' | OC' | HB'2 | 119.1° | 120.2° |
| CA' | CB' | HB'1 | HB'2 | 118.8° | 122.5° |
| CA' | CB' | OC' | CD' | 180.0° | 179.0° |
| HA'1 | CA' | CB' | OC' | 53.7° | 180.0° |
| HA'1 | CA' | CB' | HB'1 | 174.9° | 60.9° |
| HA'1 | CA' | CB' | HB'2 | 65.9° | 61.2° |
| HA'2 | CA' | CB' | OC' | 172.7° | 58.0° |
| HA'2 | CA' | CB' | HB'1 | 66.1° | 61.1° |
| HA'2 | CA' | CB' | HB'2 | 53.1° | 176.9° |
| OC' | CB' | HB'1 | HB'2 | 120.5° | 117.9° |
| CB' | OC' | CD' | HD'1 | 60.0° | 93.0° |
| CB' | OC' | CD' | HD'2 | 179.5° | 146.2° |
| CB' | OC' | CD' | HD'3 | 61.1° | 26.6° |
| HB'1 | CB' | OC' | CD' | 59.6° | 60.0° |
| HB'2 | CB' | OC' | CD' | 60.8° | 58.8° |
| OC' | CD' | HD'1 | HD'2 | 119.5° | 120.4° |
| OC' | CD' | HD'1 | HD'3 | 121.3° | 119.3° |
| OC' | CD' | HD'2 | HD'3 | 120.2° | 119.4° |
| HD'1 | CD' | HD'2 | HD'3 | 119.6° | 120.2° |
| H71 | C7 | H72 | H73 | 121.6° | 119.1° |
