Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

C2E

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
P1O2Psing1.61Å1.51Å
O1PP1doub1.48Å1.50Å
O5'P1sing1.61Å1.59Å
C5'O5'sing1.43Å1.42Å
C4'O4'sing1.43Å1.43Å
C4'C5'sing1.53Å1.51Å
C3'C4'sing1.54Å1.52Å
O3'P11sing1.61Å1.60Å
O3'C3'sing1.43Å1.44Å
C2'C3'sing1.54Å1.49Å
C2'C1'sing1.54Å1.52Å
O2'C2'sing1.43Å1.43Å
C1'O4'sing1.43Å1.43Å
C1'N9sing1.47Å1.46Å
N9C4sing1.37Å1.31ÅAromatic
N9C8sing1.36Å1.34ÅAromatic
C8N7doub1.30Å1.35ÅAromatic
C5N7sing1.36Å1.34ÅAromatic
C5C6sing1.41Å1.47Å
C6O6doub1.22Å1.25Å
N1C6sing1.35Å1.34Å
C2N1sing1.36Å1.35Å
N2C2sing1.37Å1.35Å
N3C2doub1.31Å1.36Å
N3C4sing1.34Å1.35Å
C4C5doub1.40Å1.46ÅAromatic
P11O21sing1.61Å1.50Å
P11O5Asing1.61Å1.59Å
O11P11doub1.48Å1.50Å
C5AO5Asing1.43Å1.43Å
C5AC4Asing1.53Å1.51Å
C4AO4Asing1.43Å1.44Å
C4AC3Asing1.54Å1.52Å
O4AC1Asing1.43Å1.43Å
C3AC2Asing1.54Å1.50Å
O3AC3Asing1.43Å1.44Å
O3AP1sing1.61Å1.62Å
C2AO2Asing1.43Å1.44Å
C1AC2Asing1.54Å1.53Å
C1AN91sing1.47Å1.48Å
N91C41sing1.37Å1.32ÅAromatic
C81N71doub1.30Å1.35ÅAromatic
C81N91sing1.37Å1.35ÅAromatic
N71C51sing1.36Å1.34ÅAromatic
C51C41doub1.40Å1.46ÅAromatic
C51C61sing1.41Å1.47Å
C61O61doub1.22Å1.25Å
C61N11sing1.35Å1.34Å
C21N11sing1.36Å1.35Å
C21N21sing1.37Å1.35Å
N31C21doub1.31Å1.35Å
C41N31sing1.34Å1.35Å
O2PHO2Psing0.97Å0.95Å
C5'H5'1sing1.09Å1.10Å
C5'H5'2sing1.09Å1.10Å
C4'H4'sing1.09Å1.10Å
C3'H3'sing1.09Å1.10Å
C2'H2'sing1.09Å1.10Å
O2'HO2'sing0.97Å0.95Å
C1'H1'sing1.09Å1.10Å
C8H8sing1.08Å1.08Å
N1HN1sing0.97Å1.00Å
N2HN21sing0.97Å1.00Å
N2HN22sing0.97Å1.00Å
O21HO21sing0.97Å0.95Å
C5AH511sing1.09Å1.10Å
C5AH512sing1.09Å1.10Å
C4AH4Asing1.09Å1.10Å
C3AH3Asing1.09Å1.10Å
C2AH2Asing1.09Å1.10Å
O2AHO2Asing0.97Å0.95Å
C1AH1Asing1.09Å1.10Å
C81H81sing1.08Å1.08Å
N11HN11sing0.97Å1.00Å
N21HN24sing0.97Å1.00Å
N21HN23sing0.97Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O2PP1O1P113.5°109.5°
O2PP1O5'111.8°109.5°
O2PP1O3A108.6°109.5°
P1O2PHO2P109.5°114.0°
O1PP1O5'106.5°109.5°
O1PP1O3A107.2°109.4°
P1O5'C5'119.3°123.3°
O5'P1O3A109.1°109.5°
O5'C5'C4'109.2°109.7°
O5'C5'H5'1109.5°109.4°
O5'C5'H5'2109.6°109.5°
O4'C4'C5'110.1°109.6°
O4'C4'C3'105.7°107.7°
C4'O4'C1'110.7°109.6°
O4'C4'H4'112.8°109.8°
C5'C4'C3'112.9°110.0°
C4'C5'H5'1109.6°109.4°
C4'C5'H5'2109.6°109.4°
C5'C4'H4'105.6°109.8°
C4'C3'O3'111.3°110.5°
C4'C3'C2'100.7°105.0°
C3'C4'H4'110.0°109.9°
C4'C3'H3'116.2°110.6°
P11O3'C3'109.7°123.3°
O3'P11O21108.6°109.4°
O3'P11O5A108.8°109.6°
O3'P11O11107.6°109.5°
O3'C3'C2'115.6°110.4°
O3'C3'H3'101.6°110.2°
C3'C2'C1'105.9°105.0°
C3'C2'O2'108.9°110.3°
C2'C3'H3'112.0°110.1°
C3'C2'H2'112.5°110.3°
C1'C2'O2'110.5°110.3°
C2'C1'O4'104.5°107.7°
C2'C1'N9109.8°109.8°
C1'C2'H2'111.0°110.4°
C2'C1'H1'112.2°109.9°
O2'C2'H2'108.1°110.3°
C2'O2'HO2'109.5°114.0°
O4'C1'N9108.6°109.8°
O4'C1'H1'113.3°109.8°
C1'N9C4125.1°126.3°
C1'N9C8126.1°126.2°
N9C1'H1'108.4°109.8°
C4N9C8108.8°107.5°
N9C4N3134.9°134.2°
N9C4C5106.3°106.1°
N9C8N7111.0°109.8°
N9C8H8124.5°125.1°
C8N7C5107.1°109.4°
N7C8H8124.5°125.1°
N7C5C6135.9°134.2°
N7C5C4106.7°107.2°
C5C6O6120.7°120.8°
C5C6N1118.3°118.4°
C6C5C4117.4°118.6°
O6C6N1120.9°120.8°
C6N1C2121.9°120.3°
C6N1HN1119.1°119.9°
N1C2N2119.3°119.0°
N1C2N3122.7°121.9°
C2N1HN1119.0°119.9°
N2C2N3118.0°119.0°
C2N2HN21120.0°120.0°
C2N2HN22120.0°120.0°
C2N3C4120.9°121.1°
N3C4C5118.8°119.7°
O21P11O5A110.9°109.5°
O21P11O11110.9°109.4°
P11O21HO21109.5°114.0°
O5AP11O11109.9°109.4°
P11O5AC5A118.8°123.2°
O5AC5AC4A110.2°109.8°
O5AC5AH511109.3°109.4°
O5AC5AH512109.2°109.5°
C5AC4AO4A112.1°109.7°
C5AC4AC3A113.0°109.9°
C4AC5AH511109.2°109.4°
C4AC5AH512109.2°109.4°
C5AC4AH4A104.0°109.9°
O4AC4AC3A105.6°107.7°
C4AO4AC1A110.7°109.8°
O4AC4AH4A111.6°109.8°
C4AC3AC2A101.8°105.0°
C4AC3AO3A111.5°110.6°
C3AC4AH4A110.7°109.8°
C4AC3AH3A114.8°110.6°
O4AC1AC2A105.1°107.9°
O4AC1AN91110.3°109.8°
O4AC1AH1A111.8°109.8°
C2AC3AO3A114.0°110.2°
C3AC2AO2A109.0°110.3°
C3AC2AC1A105.8°105.1°
C2AC3AH3A112.3°110.0°
C3AC2AH2A112.7°110.4°
C3AO3AP1111.6°123.1°
O3AC3AH3A102.8°110.4°
O2AC2AC1A111.1°110.3°
O2AC2AH2A107.6°110.3°
C2AO2AHO2A109.5°114.0°
C2AC1AN91109.4°109.8°
C1AC2AH2A110.7°110.3°
C2AC1AH1A112.7°109.8°
C1AN91C41125.1°126.3°
C1AN91C81126.7°126.2°
N91C1AH1A107.7°109.7°
C41N91C81108.2°107.5°
N91C41C51107.0°106.1°
N91C41N31133.9°134.2°
N71C81N91111.1°109.8°
C81N71C51107.3°109.4°
N71C81H81124.5°125.1°
N91C81H81124.4°125.1°
N71C51C41106.3°107.2°
N71C51C61136.4°134.2°
C41C51C61117.3°118.6°
C51C41N31119.0°119.7°
C51C61O61121.9°120.8°
C51C61N11118.0°118.4°
O61C61N11120.1°120.8°
C61N11C21122.3°120.3°
C61N11HN11118.9°119.8°
N11C21N21118.7°119.0°
N11C21N31122.7°121.9°
C21N11HN11118.8°119.9°
N21C21N31118.5°119.1°
C21N21HN24120.0°120.0°
C21N21HN23120.0°120.0°
C21N31C41120.7°121.2°
H5'1C5'H5'2109.4°109.4°
HN21N2HN22120.0°120.0°
H511C5AH512109.7°109.3°
HN24N21HN23120.0°120.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O2PP1O1PO5'123.4°120.0°
O2PP1O1PO3A119.9°120.0°
O2PP1O5'O3A120.1°120.0°
O2PP1O5'C5'178.8°70.0°
O2PP1O3AC3A55.7°45.2°
O1PP1O5'O3A115.4°120.0°
O1PP1O5'C5'54.3°50.1°
O1PP1O3AC3A178.7°165.2°
O1PP1O2PHO2P0.0°60.0°
P1O5'C5'C4'178.0°161.6°
O5'P1O3AC3A66.4°74.8°
O5'P1O2PHO2P120.5°60.0°
P1O5'C5'H5'158.0°41.6°
P1O5'C5'H5'261.9°78.3°
O5'C5'C4'O4'53.9°172.5°
O5'C5'C4'H5'1120.0°120.0°
O5'C5'C4'H5'2120.0°120.1°
O5'C5'C4'C3'63.9°69.3°
C5'O5'P1O3A61.1°170.0°
O5'C5'H5'1H5'2120.1°119.9°
O5'C5'C4'H4'175.9°51.7°
O4'C4'C5'C3'117.8°118.2°
O4'C4'C5'H4'122.0°120.7°
O4'C4'C3'H4'122.0°119.6°
O4'C4'C3'O3'156.1°132.7°
O4'C4'C3'C2'33.0°13.7°
C4'O4'C1'C2'1.2°22.4°
C4'O4'C1'N9115.9°142.0°
O4'C4'C5'H5'1173.9°52.4°
O4'C4'C5'H5'266.1°67.4°
O4'C4'C3'H3'88.2°105.1°
C4'O4'C1'H1'123.7°97.2°
C5'C4'C3'H4'117.6°121.0°
C5'C4'C3'O3'83.5°107.9°
C5'C4'C3'C2'153.4°133.1°
C5'C4'O4'C1'142.6°142.4°
C4'C5'H5'1H5'2120.1°119.8°
C5'C4'C3'H3'32.2°14.3°
C4'C3'O3'P11147.0°118.6°
C4'C3'O3'C2'114.1°115.7°
C4'C3'O3'H3'124.4°122.5°
C4'C3'C2'H3'124.2°119.1°
C4'C3'C2'C1'33.8°0.5°
C4'C3'C2'O2'85.0°118.3°
C3'C4'O4'C1'20.4°22.8°
C3'C4'C5'H5'156.1°170.6°
C3'C4'C5'H5'2176.1°50.8°
C4'C3'C2'H2'155.2°119.5°
P11O3'C3'C2'98.9°125.7°
O3'P11O21O5A119.5°120.1°
O3'P11O21O11118.1°119.9°
O3'P11O5AO11117.6°120.0°
O3'P11O5AC5A61.6°173.7°
P11O3'C3'H3'22.6°3.9°
O3'P11O21HO21118.1°179.9°
O3'C3'C2'H3'115.8°121.9°
O3'C3'C2'C1'153.8°119.6°
O3'C3'C2'O2'35.0°0.7°
C3'O3'P11O2154.2°40.9°
C3'O3'P11O5A66.6°79.2°
C3'O3'P11O11174.4°160.8°
O3'C3'C4'H4'34.1°13.1°
O3'C3'C2'H2'84.8°121.4°
C3'C2'C1'O2'117.8°118.9°
C3'C2'C1'H2'122.3°118.9°
C3'C2'O2'H2'122.5°122.2°
C3'C2'C1'O4'22.8°12.8°
C3'C2'C1'N993.5°132.4°
C2'C3'C4'H4'89.0°105.9°
C3'C2'O2'HO2'180.0°180.0°
C3'C2'C1'H1'145.9°106.8°
C1'C2'O2'H2'121.6°122.2°
C2'C1'O4'N9117.1°119.5°
C2'C1'O4'H1'122.4°119.6°
C2'C1'N9H1'122.8°120.9°
C2'C1'N9C466.4°85.0°
C2'C1'N9C8113.1°94.7°
C1'C2'C3'H3'90.4°118.5°
C1'C2'O2'HO2'64.1°64.4°
O2'C2'C1'O4'95.0°131.7°
O2'C2'C1'N9148.8°108.8°
O2'C2'C3'H3'150.8°122.6°
O2'C2'C1'H1'28.2°12.1°
O4'C1'N9H1'123.5°120.9°
O4'C1'N9C4179.9°156.8°
O4'C1'N9C80.6°23.5°
C1'O4'C4'H4'99.8°96.8°
O4'C1'C2'H2'145.1°106.1°
C1'N9C4C8179.6°179.7°
C1'N9C8N7179.7°180.0°
C1'N9C4N30.6°0.8°
C1'N9C4C5179.8°179.9°
N9C1'C2'H2'28.9°13.4°
C1'N9C8H80.3°0.0°
C4N9C8N70.1°0.3°
N9C4C5N70.3°0.4°
N9C4C5C6180.0°179.8°
N9C4N3C2179.8°179.5°
N9C4N3C5179.5°179.0°
C4N9C1'H1'56.4°35.9°
C4N9C8H8179.9°179.8°
N9C8N7H8180.0°180.0°
N9C8N7C50.1°0.0°
C8N9C4N3179.8°179.5°
C8N9C4C50.2°0.4°
C8N9C1'H1'124.1°144.4°
C8N7C5C6179.9°180.0°
C8N7C5C40.3°0.2°
N7C5C6C4179.6°179.7°
N7C5C6O60.5°0.0°
N7C5C6N1179.9°180.0°
N7C5C4N3179.9°179.6°
C5N7C8H8179.9°180.0°
C5C6O6N1179.6°180.0°
C5C6N1C20.2°0.0°
C6C5C4N30.4°0.6°
C5C6N1HN1179.7°179.9°
O6C6N1C2179.8°180.0°
O6C6C5C4180.0°179.7°
O6C6N1HN10.1°0.1°
C6N1C2HN1180.0°179.9°
C6N1C2N2179.9°180.0°
C6N1C2N30.1°0.0°
N1C6C5C40.3°0.3°
N1C2N2N3179.8°180.0°
N1C2N3C40.2°0.3°
N1C2N2HN21179.8°0.0°
N1C2N2HN220.2°180.0°
N2C2N3C4180.0°179.7°
N2C2N1HN10.0°0.1°
C2N2HN21HN22180.0°180.0°
C2N3C4C50.3°0.5°
N3C2N1HN1179.8°179.9°
N3C2N2HN210.0°180.0°
N3C2N2HN22180.0°0.0°
O21P11O5AO11123.0°119.9°
O21P11O5AC5A179.0°66.2°
P11O5AC5AC4A178.7°169.4°
O5AP11O21HO21122.4°59.9°
P11O5AC5AH51158.7°49.3°
P11O5AC5AH51261.3°70.5°
O11P11O5AC5A55.9°53.7°
O11P11O21HO210.0°60.0°
O5AC5AC4AH511120.0°120.1°
O5AC5AC4AH512120.0°120.1°
O5AC5AC4AO4A57.6°172.1°
O5AC5AC4AC3A61.6°69.6°
O5AC5AH511H512119.7°119.9°
O5AC5AC4AH4A178.3°51.3°
C5AC4AO4AC3A123.5°119.6°
C5AC4AO4AH4A116.2°120.9°
C5AC4AC3AH4A116.2°121.1°
C5AC4AO4AC1A143.2°141.9°
C5AC4AC3AC2A154.3°133.9°
C5AC4AC3AO3A83.7°107.4°
C4AC5AH511H512119.7°119.8°
C5AC4AC3AH3A32.7°15.3°
O4AC4AC3AH4A120.9°119.4°
O4AC4AC3AC2A31.5°14.4°
O4AC4AC3AO3A153.5°133.1°
C4AO4AC1AC2A0.4°20.9°
C4AO4AC1AN91117.3°140.5°
O4AC4AC5AH511177.6°52.0°
O4AC4AC5AH51262.4°67.8°
O4AC4AC3AH3A90.2°104.3°
C4AO4AC1AH1A122.9°98.8°
C3AC4AO4AC1A19.8°22.2°
C4AC3AC2AO3A120.2°119.0°
C4AC3AC2AH3A123.3°119.0°
C4AC3AO3AH3A123.5°122.7°
C4AC3AO3AP1144.9°121.2°
C4AC3AC2AO2A87.8°116.9°
C4AC3AC2AC1A31.7°2.0°
C3AC4AC5AH51158.4°170.2°
C3AC4AC5AH512178.4°50.5°
C4AC3AC2AH2A152.8°121.0°
O4AC1AC2AC3A20.8°10.9°
O4AC1AC2AO2A97.3°129.8°
O4AC1AC2AN91118.4°119.7°
O4AC1AC2AH1A121.9°119.7°
O4AC1AN91H1A122.2°120.8°
O4AC1AN91C41164.3°156.5°
O4AC1AN91C8116.2°23.9°
C1AO4AC4AH4A100.6°97.2°
O4AC1AC2AH2A143.2°108.0°
C2AC3AO3AH3A121.9°121.7°
C2AC3AO3AP1100.5°123.2°
C3AC2AO2AC1A116.2°115.7°
C3AC2AO2AH2A122.5°122.2°
C3AC2AC1AH2A122.4°118.9°
C3AC2AC1AN9197.5°130.6°
C2AC3AC4AH4A89.5°105.1°
C3AC2AO2AHO2A180.0°180.0°
C3AC2AC1AH1A142.7°108.7°
O3AC3AC2AO2A32.4°2.2°
O3AC3AC2AC1A151.9°121.1°
O3AC3AC4AH4A32.5°13.7°
O3AC3AC2AH2A87.0°120.0°
O3AP1O2PHO2P119.1°180.0°
P1O3AC3AH3A21.4°1.5°
O2AC2AC1AH2A119.5°122.2°
O2AC2AC1AN91144.3°110.5°
O2AC2AC3AH3A148.8°124.1°
O2AC2AC1AH1A24.6°10.2°
C2AC1AN91H1A122.7°120.7°
C2AC1AN91C4180.6°85.0°
C2AC1AN91C8198.8°94.6°
C1AC2AC3AH3A91.6°117.0°
C1AC2AO2AHO2A63.7°64.3°
C1AN91C41C81179.5°179.7°
C1AN91C81N71179.3°180.0°
C1AN91C41C51179.1°179.9°
C1AN91C41N310.2°0.9°
N91C1AC2AH2A24.8°11.6°
C1AN91C81H810.7°0.1°
C41N91C81N710.2°0.3°
N91C41C51N710.5°0.4°
N91C41C51N31179.4°179.1°
N91C41C51C61179.7°179.8°
N91C41N31C21179.7°179.5°
C41N91C1AH1A42.1°35.7°
C41N91C81H81179.8°179.7°
N71C81N91H81180.0°179.9°
C81N71C51C410.3°0.2°
C81N71C51C61179.9°180.0°
N91C81N71C510.1°0.0°
C81N91C41C510.4°0.5°
C81N91C41N31179.7°179.4°
C81N91C1AH1A138.5°144.7°
N71C51C41C61179.9°179.8°
N71C51C61O610.4°0.1°
N71C51C61N11180.0°180.0°
N71C51C41N31179.9°179.6°
C51N71C81H81179.9°180.0°
C41C51C61O61179.8°179.6°
C41C51C61N110.1°0.3°
C51C41N31C210.5°0.7°
C51C61O61N11179.7°179.9°
C51C61N11C210.2°0.0°
C61C51C41N310.3°0.6°
C51C61N11HN11179.8°180.0°
O61C61N11C21179.9°180.0°
O61C61N11HN110.1°0.1°
C61N11C21HN11180.0°180.0°
C61N11C21N21179.7°180.0°
C61N11C21N310.4°0.0°
N11C21N21N31179.8°180.0°
N11C21N31C410.6°0.4°
N11C21N21HN24179.8°0.0°
N11C21N21HN230.2°179.9°
N21C21N31C41179.6°179.6°
N21C21N11HN110.3°0.0°
C21N21HN24HN23180.0°179.9°
N31C21N11HN11179.5°180.0°
N31C21N21HN240.0°180.0°
N31C21N21HN23180.0°0.1°
H5'1C5'C4'H4'64.1°68.3°
H5'2C5'C4'H4'55.9°171.9°
H4'C4'C3'H3'149.8°135.4°
H3'C3'C2'H2'31.0°0.4°
H2'C2'O2'HO2'57.5°57.8°
H2'C2'C1'H1'91.7°134.3°
H511C5AC4AH4A61.6°68.8°
H512C5AC4AH4A58.3°171.4°
H4AC4AC3AH3A148.9°136.3°
H3AC3AC2AH2A29.4°2.0°
H2AC2AO2AHO2A57.5°57.8°
H2AC2AC1AH1A94.9°132.3°

222926

PDB entries from 2024-07-24

PDB statisticsPDBj update infoContact PDBjnumon