C1Y

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C8	N7	sing	1.36Å	1.37Å	Aromatic
C8	C9	doub	1.35Å	1.39Å	Aromatic
N7	C5	sing	1.37Å	1.33Å	Aromatic
C9	C10	sing	1.51Å	1.51Å
C9	C4	sing	1.46Å	1.47Å	Aromatic
C10	N1'	sing	1.47Å	1.46Å
C5	C4	doub	1.41Å	1.45Å	Aromatic
C5	C6	sing	1.40Å	1.47Å	Aromatic
N6	C6	sing	1.39Å	1.35Å
C4	N3	sing	1.34Å	1.36Å	Aromatic
C6	N1	doub	1.33Å	1.36Å	Aromatic
N1'	C1'	sing	1.49Å	1.49Å
N1'	C2'	sing	1.48Å	1.48Å
C1'	C4'	sing	1.55Å	1.53Å
N3	C2	doub	1.31Å	1.34Å	Aromatic
N1	C2	sing	1.32Å	1.35Å	Aromatic
C2'	C3'	sing	1.54Å	1.51Å
C4'	C20	sing	1.53Å	1.54Å
C4'	C3'	sing	1.55Å	1.52Å
C21	C20	sing	1.53Å	1.54Å
C21	C22	sing	1.53Å	1.52Å
O3'	C3'	sing	1.43Å	1.44Å
C10	H1	sing	1.09Å	1.10Å
C10	H2	sing	1.09Å	1.10Å
C20	H3	sing	1.09Å	1.10Å
C20	H4	sing	1.09Å	1.10Å
C21	H5	sing	1.09Å	1.10Å
C21	H6	sing	1.09Å	1.10Å
C8	H7	sing	1.08Å	1.08Å
C22	H8	sing	1.09Å	1.10Å
C22	H9	sing	1.09Å	1.10Å
C22	H10	sing	1.09Å	1.10Å
O3'	H11	sing	0.97Å	0.95Å
C3'	H12	sing	1.09Å	1.10Å
C2'	H13	sing	1.09Å	1.10Å
C2'	H14	sing	1.09Å	1.10Å
C1'	H16	sing	1.09Å	1.10Å
C1'	H17	sing	1.09Å	1.10Å
C4'	H18	sing	1.09Å	1.10Å
N7	H19	sing	0.97Å	1.00Å
N6	H20	sing	0.97Å	1.00Å
N6	H21	sing	0.97Å	1.00Å
C2	H22	sing	1.08Å	1.08Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
N7	C8	C9	111.3°	109.9°
C8	N7	C5	110.4°	109.8°
N7	C8	H7	124.4°	125.1°
C8	N7	H19	124.8°	125.1°
C8	C9	C10	125.5°	126.5°
C8	C9	C4	104.5°	107.1°
C9	C8	H7	124.4°	125.1°
N7	C5	C4	107.7°	107.3°
N7	C5	C6	136.8°	134.6°
C5	N7	H19	124.8°	125.1°
C10	C9	C4	130.0°	126.4°
C9	C10	N1'	117.7°	109.5°
C9	C10	H1	107.4°	109.5°
C9	C10	H2	107.3°	109.5°
C9	C4	C5	106.2°	105.9°
C9	C4	N3	131.8°	134.9°
C10	N1'	C1'	116.9°	111.0°
C10	N1'	C2'	114.3°	111.0°
N1'	C10	H1	107.4°	109.4°
N1'	C10	H2	107.4°	109.5°
C4	C5	C6	115.5°	118.1°
C5	C4	N3	122.0°	119.1°
C5	C6	N6	120.1°	120.7°
C5	C6	N1	118.0°	118.6°
N6	C6	N1	121.8°	120.7°
C6	N6	H20	109.5°	120.0°
C6	N6	H21	109.5°	120.0°
C4	N3	C2	118.9°	120.4°
C6	N1	C2	122.3°	121.4°
C1'	N1'	C2'	107.4°	105.8°
N1'	C1'	C4'	105.6°	103.3°
N1'	C1'	H16	110.4°	110.7°
N1'	C1'	H17	110.4°	110.7°
N1'	C2'	C3'	101.0°	107.1°
N1'	C2'	H13	111.6°	109.9°
N1'	C2'	H14	111.5°	110.1°
C1'	C4'	C20	113.0°	110.7°
C1'	C4'	C3'	104.0°	102.8°
C4'	C1'	H16	110.4°	110.6°
C4'	C1'	H17	110.4°	110.7°
C1'	C4'	H18	108.8°	110.7°
N3	C2	N1	123.3°	122.4°
N3	C2	H22	118.4°	118.8°
N1	C2	H22	118.4°	118.8°
C2'	C3'	C4'	104.6°	105.2°
C2'	C3'	O3'	108.0°	110.3°
C2'	C3'	H12	110.2°	110.3°
C3'	C2'	H13	111.5°	109.9°
C3'	C2'	H14	111.6°	109.9°
C20	C4'	C3'	113.5°	110.9°
C4'	C20	C21	113.8°	109.5°
C4'	C20	H3	108.4°	109.5°
C4'	C20	H4	108.4°	109.5°
C20	C4'	H18	108.6°	110.7°
C4'	C3'	O3'	112.5°	110.3°
C4'	C3'	H12	110.0°	110.3°
C3'	C4'	H18	108.8°	110.8°
C20	C21	C22	115.2°	109.5°
C21	C20	H3	108.4°	109.5°
C21	C20	H4	108.4°	109.5°
C20	C21	H5	108.0°	109.5°
C20	C21	H6	108.0°	109.5°
C22	C21	H5	108.0°	109.5°
C22	C21	H6	108.0°	109.5°
C21	C22	H8	109.5°	109.5°
C21	C22	H9	109.5°	109.5°
C21	C22	H10	109.5°	109.5°
C3'	O3'	H11	109.5°	114.0°
O3'	C3'	H12	111.3°	110.2°
H1	C10	H2	109.4°	109.5°
H3	C20	H4	109.5°	109.5°
H5	C21	H6	109.5°	109.5°
H8	C22	H9	109.5°	109.5°
H8	C22	H10	109.4°	109.5°
H9	C22	H10	109.5°	109.5°
H13	C2'	H14	109.5°	109.9°
H16	C1'	H17	109.5°	110.7°
H20	N6	H21	109.4°	120.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
N7	C8	C9	H7	180.0°	179.9°
C8	N7	C5	H19	180.0°	179.9°
N7	C8	C9	C10	178.8°	180.0°
N7	C8	C9	C4	1.3°	0.2°
C8	N7	C5	C4	0.7°	0.1°
C8	N7	C5	C6	179.3°	179.9°
C9	C8	N7	C5	1.3°	0.1°
C8	C9	C10	C4	176.8°	179.7°
C8	C9	C10	N1'	110.4°	100.0°
C8	C9	C4	C5	0.9°	0.3°
C8	C9	C4	N3	179.6°	180.0°
C8	C9	C10	H1	10.8°	140.0°
C8	C9	C10	H2	128.4°	20.0°
C9	C8	N7	H19	178.7°	180.0°
N7	C5	C4	C9	0.1°	0.2°
N7	C5	C4	C6	180.0°	180.0°
N7	C5	C6	N6	0.2°	0.0°
N7	C5	C4	N3	179.7°	180.0°
N7	C5	C6	N1	179.3°	180.0°
C5	N7	C8	H7	178.7°	180.0°
C9	C10	N1'	H1	121.2°	120.0°
C9	C10	N1'	H2	121.2°	120.0°
C10	C9	C4	C5	178.2°	180.0°
C10	C9	C4	N3	2.2°	0.2°
C9	C10	N1'	C1'	47.5°	170.0°
C9	C10	N1'	C2'	79.1°	72.6°
C9	C10	H1	H2	116.2°	120.0°
C10	C9	C8	H7	1.2°	0.1°
C4	C9	C10	N1'	72.8°	80.3°
C9	C4	C5	N3	179.6°	179.8°
C9	C4	C5	C6	179.9°	179.8°
C9	C4	N3	C2	179.7°	179.7°
C4	C9	C10	H1	166.0°	39.7°
C4	C9	C10	H2	48.4°	159.7°
C4	C9	C8	H7	178.7°	179.9°
C10	N1'	C1'	C2'	130.0°	120.5°
C10	N1'	C1'	C4'	150.4°	159.7°
C10	N1'	C2'	C3'	169.6°	145.8°
N1'	C10	H1	H2	116.3°	120.0°
C10	N1'	C2'	H13	71.8°	26.4°
C10	N1'	C2'	H14	51.0°	94.7°
C10	N1'	C1'	H16	31.0°	41.3°
C10	N1'	C1'	H17	90.2°	81.8°
C4	C5	C6	N6	179.8°	180.0°
C4	C5	C6	N1	0.6°	0.0°
C5	C4	N3	C2	0.2°	0.0°
C4	C5	N7	H19	179.3°	179.9°
C5	C6	N6	N1	179.5°	180.0°
C6	C5	C4	N3	0.2°	0.0°
C5	C6	N1	C2	1.0°	0.1°
C6	C5	N7	H19	0.7°	0.2°
C5	C6	N6	H20	179.6°	0.0°
C5	C6	N6	H21	60.4°	180.0°
N6	C6	N1	C2	179.4°	179.9°
C6	N6	H20	H21	120.0°	180.0°
C4	N3	C2	N1	0.5°	0.1°
C4	N3	C2	H22	179.5°	180.0°
C6	N1	C2	N3	0.9°	0.1°
N1	C6	N6	H20	0.0°	180.0°
N1	C6	N6	H21	120.0°	0.0°
C6	N1	C2	H22	179.0°	180.0°
N1'	C1'	C4'	H16	119.4°	118.5°
N1'	C1'	C4'	H17	119.4°	118.5°
C1'	N1'	C2'	C3'	38.2°	25.3°
N1'	C1'	C4'	C20	117.7°	155.8°
N1'	C1'	C4'	C3'	5.8°	37.3°
C1'	N1'	C10	H1	73.7°	50.0°
C1'	N1'	C10	H2	168.7°	70.0°
C1'	N1'	C2'	H13	156.8°	94.1°
C1'	N1'	C2'	H14	80.4°	144.8°
N1'	C1'	H16	H17	121.7°	123.1°
N1'	C1'	C4'	H18	121.6°	81.1°
C2'	N1'	C1'	C4'	20.5°	39.1°
N1'	C2'	C3'	H13	118.6°	119.4°
N1'	C2'	C3'	H14	118.6°	119.6°
N1'	C2'	C3'	C4'	41.3°	1.3°
N1'	C2'	C3'	O3'	78.7°	117.7°
C2'	N1'	C10	H1	159.7°	167.4°
C2'	N1'	C10	H2	42.1°	47.4°
N1'	C2'	C3'	H12	159.5°	120.3°
N1'	C2'	H13	H14	123.9°	121.3°
C2'	N1'	C1'	H16	98.9°	79.2°
C2'	N1'	C1'	H17	139.9°	157.6°
C1'	C4'	C3'	C2'	29.2°	21.9°
C1'	C4'	C20	C3'	118.0°	113.5°
C1'	C4'	C20	H18	120.8°	123.1°
C1'	C4'	C3'	H18	115.8°	118.3°
C1'	C4'	C20	C21	89.1°	66.5°
C1'	C4'	C3'	O3'	87.7°	140.8°
C1'	C4'	C20	H3	150.2°	53.6°
C1'	C4'	C20	H4	31.5°	173.5°
C1'	C4'	C3'	H12	147.6°	97.1°
C4'	C1'	H16	H17	121.8°	123.0°
N3	C2	N1	H22	180.0°	179.9°
C2'	C3'	C4'	C20	93.9°	140.2°
C2'	C3'	C4'	O3'	116.9°	119.0°
C2'	C3'	C4'	H12	118.4°	119.0°
C2'	C3'	O3'	H12	121.1°	122.1°
C2'	C3'	O3'	H11	180.0°	62.7°
C3'	C2'	H13	H14	124.0°	121.1°
C2'	C3'	C4'	H18	145.0°	96.5°
C20	C4'	C3'	H18	121.1°	123.3°
C4'	C20	C21	H3	120.7°	120.0°
C4'	C20	C21	H4	120.7°	120.0°
C4'	C20	C21	C22	112.7°	180.0°
C20	C4'	C3'	O3'	149.2°	100.8°
C4'	C20	H3	H4	118.0°	120.0°
C4'	C20	C21	H5	126.5°	60.0°
C4'	C20	C21	H6	8.1°	60.0°
C20	C4'	C3'	H12	24.4°	21.2°
C20	C4'	C1'	H16	1.7°	37.3°
C20	C4'	C1'	H17	122.9°	85.7°
C3'	C4'	C20	C21	152.8°	179.9°
C4'	C3'	O3'	H12	124.0°	122.1°
C3'	C4'	C20	H3	32.2°	59.9°
C3'	C4'	C20	H4	86.5°	60.1°
C4'	C3'	O3'	H11	65.1°	178.6°
C4'	C3'	C2'	H13	159.9°	118.1°
C4'	C3'	C2'	H14	77.3°	120.8°
C3'	C4'	C1'	H16	125.1°	81.2°
C3'	C4'	C1'	H17	113.6°	155.8°
C20	C21	C22	H5	120.9°	120.0°
C20	C21	C22	H6	120.8°	120.0°
C21	C20	H3	H4	118.0°	120.0°
C20	C21	H5	H6	117.4°	120.0°
C20	C21	C22	H8	180.0°	60.0°
C20	C21	C22	H9	60.0°	60.0°
C20	C21	C22	H10	60.0°	180.0°
C21	C20	C4'	H18	31.6°	56.7°
C22	C21	C20	H3	8.0°	60.0°
C22	C21	C20	H4	126.7°	60.0°
C22	C21	H5	H6	117.4°	120.0°
C21	C22	H8	H9	120.0°	120.0°
C21	C22	H8	H10	120.0°	120.0°
C21	C22	H9	H10	120.0°	120.0°
O3'	C3'	C2'	H13	39.9°	122.9°
O3'	C3'	C2'	H14	162.7°	1.8°
O3'	C3'	C4'	H18	28.1°	22.5°
H3	C20	C21	H5	112.9°	60.0°
H3	C20	C21	H6	128.8°	180.0°
H3	C20	C4'	H18	89.0°	176.7°
H4	C20	C21	H5	5.8°	NaN°
H4	C20	C21	H6	112.5°	60.0°
H4	C20	C4'	H18	152.3°	63.3°
H5	C21	C22	H8	59.1°	NaN°
H5	C21	C22	H9	179.1°	60.0°
H5	C21	C22	H10	60.9°	60.0°
H6	C21	C22	H8	59.2°	60.0°
H6	C21	C22	H9	60.8°	180.0°
H6	C21	C22	H10	179.2°	60.0°
H7	C8	N7	H19	1.3°	0.1°
H8	C22	H9	H10	120.0°	120.0°
H11	O3'	C3'	H12	58.9°	59.3°
H12	C3'	C2'	H13	81.9°	0.9°
H12	C3'	C2'	H14	40.9°	120.2°
H12	C3'	C4'	H18	96.6°	144.5°
H16	C1'	C4'	H18	119.0°	160.4°
H17	C1'	C4'	H18	2.2°	37.4°

Release date:	2018-09-12
Definition date:	2017-09-11
Last modified:	2021-03-01
Release status:	REL
Processing site:	RCSB
Derived from:	6AYO