C
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| OP3 | P | sing | 1.61Å | 1.60Å | |
| OP3 | HOP3 | sing | 0.97Å | 0.95Å | |
| P | OP1 | doub | 1.48Å | 1.46Å | |
| P | OP2 | sing | 1.61Å | 1.48Å | |
| P | O5' | sing | 1.61Å | 1.58Å | |
| OP2 | HOP2 | sing | 0.97Å | 0.95Å | |
| O5' | C5' | sing | 1.43Å | 1.44Å | |
| C5' | C4' | sing | 1.53Å | 1.50Å | |
| C5' | H5' | sing | 1.09Å | 1.11Å | |
| C5' | H5'' | sing | 1.09Å | 1.12Å | |
| C4' | O4' | sing | 1.44Å | 1.49Å | |
| C4' | C3' | sing | 1.54Å | 1.53Å | |
| C4' | H4' | sing | 1.09Å | 1.11Å | |
| O4' | C1' | sing | 1.44Å | 1.44Å | |
| C3' | O3' | sing | 1.43Å | 1.41Å | |
| C3' | C2' | sing | 1.55Å | 1.49Å | |
| C3' | H3' | sing | 1.09Å | 1.12Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| C2' | O2' | sing | 1.43Å | 1.39Å | |
| C2' | C1' | sing | 1.54Å | 1.50Å | |
| C2' | H2' | sing | 1.09Å | 1.11Å | |
| O2' | HO2' | sing | 0.97Å | 0.95Å | |
| C1' | N1 | sing | 1.46Å | 1.50Å | |
| C1' | H1' | sing | 1.09Å | 1.11Å | |
| N1 | C2 | sing | 1.34Å | 1.35Å | |
| N1 | C6 | sing | 1.36Å | 1.36Å | |
| C2 | O2 | doub | 1.22Å | 1.28Å | |
| C2 | N3 | sing | 1.33Å | 1.37Å | |
| N3 | C4 | doub | 1.33Å | 1.30Å | |
| C4 | N4 | sing | 1.38Å | 1.36Å | |
| C4 | C5 | sing | 1.41Å | 1.46Å | |
| N4 | H41 | sing | 0.97Å | 1.02Å | |
| N4 | H42 | sing | 0.97Å | 1.02Å | |
| C5 | C6 | doub | 1.35Å | 1.32Å | |
| C5 | H5 | sing | 1.08Å | 1.10Å | |
| C6 | H6 | sing | 1.08Å | 1.10Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| P | OP3 | HOP3 | 106.3° | 106.8° |
| OP3 | P | OP1 | 106.3° | 109.5° |
| OP3 | P | OP2 | 109.2° | 109.4° |
| OP3 | P | O5' | 103.3° | 109.5° |
| OP1 | P | OP2 | 119.7° | 109.5° |
| OP1 | P | O5' | 110.4° | 109.5° |
| OP2 | P | O5' | 106.7° | 109.4° |
| P | OP2 | HOP2 | 119.8° | 106.9° |
| P | O5' | C5' | 122.6° | 106.8° |
| O5' | C5' | C4' | 108.6° | 109.5° |
| O5' | C5' | H5' | 112.5° | 109.4° |
| O5' | C5' | H5'' | 112.5° | 109.5° |
| C4' | C5' | H5' | 112.6° | 109.5° |
| C4' | C5' | H5'' | 112.6° | 109.4° |
| C5' | C4' | O4' | 108.2° | 110.4° |
| C5' | C4' | C3' | 119.0° | 110.6° |
| C5' | C4' | H4' | 102.2° | 110.3° |
| H5' | C5' | H5'' | 97.9° | 109.5° |
| O4' | C4' | C3' | 104.1° | 104.8° |
| O4' | C4' | H4' | 117.6° | 110.3° |
| C4' | O4' | C1' | 105.5° | 105.2° |
| C3' | C4' | H4' | 106.5° | 110.3° |
| C4' | C3' | O3' | 108.3° | 110.5° |
| C4' | C3' | C2' | 99.4° | 104.1° |
| C4' | C3' | H3' | 119.1° | 110.4° |
| O4' | C1' | C2' | 108.2° | 104.9° |
| O4' | C1' | N1 | 108.8° | 110.4° |
| O4' | C1' | H1' | 111.6° | 110.4° |
| O3' | C3' | C2' | 116.5° | 110.6° |
| O3' | C3' | H3' | 103.0° | 110.5° |
| C3' | O3' | HO3' | 108.2° | 106.8° |
| C2' | C3' | H3' | 111.3° | 110.6° |
| C3' | C2' | O2' | 111.7° | 110.5° |
| C3' | C2' | C1' | 101.8° | 104.0° |
| C3' | C2' | H2' | 112.6° | 110.5° |
| O2' | C2' | C1' | 108.1° | 110.8° |
| O2' | C2' | H2' | 106.9° | 110.4° |
| C2' | O2' | HO2' | 111.6° | 106.9° |
| C1' | C2' | H2' | 115.9° | 110.4° |
| C2' | C1' | N1 | 112.1° | 110.4° |
| C2' | C1' | H1' | 108.4° | 110.3° |
| N1 | C1' | H1' | 107.7° | 110.3° |
| C1' | N1 | C2 | 118.7° | 119.8° |
| C1' | N1 | C6 | 119.7° | 119.8° |
| C2 | N1 | C6 | 121.7° | 120.4° |
| N1 | C2 | O2 | 119.6° | 119.5° |
| N1 | C2 | N3 | 121.7° | 121.1° |
| N1 | C6 | C5 | 119.7° | 119.2° |
| N1 | C6 | H6 | 121.5° | 120.4° |
| O2 | C2 | N3 | 118.7° | 119.4° |
| C2 | N3 | C4 | 116.4° | 120.7° |
| N3 | C4 | N4 | 119.7° | 120.2° |
| N3 | C4 | C5 | 123.6° | 119.6° |
| N4 | C4 | C5 | 116.8° | 120.2° |
| C4 | N4 | H41 | 116.8° | 120.0° |
| C4 | N4 | H42 | 109.6° | 120.1° |
| C4 | C5 | C6 | 116.9° | 119.0° |
| C4 | C5 | H5 | 126.2° | 120.5° |
| H41 | N4 | H42 | 109.5° | 119.9° |
| C6 | C5 | H5 | 116.9° | 120.5° |
| C5 | C6 | H6 | 118.8° | 120.3° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| OP3 | P | OP1 | OP2 | 124.2° | 120.0° |
| OP3 | P | OP1 | O5' | 111.4° | 120.0° |
| OP3 | P | OP2 | O5' | 111.0° | 119.9° |
| OP3 | P | OP2 | HOP2 | 57.2° | 60.0° |
| OP3 | P | O5' | C5' | 63.4° | 180.0° |
| HOP3 | OP3 | P | OP1 | 179.9° | 60.0° |
| HOP3 | OP3 | P | OP2 | 49.5° | 60.1° |
| HOP3 | OP3 | P | O5' | 63.8° | 180.0° |
| OP1 | P | OP2 | O5' | 126.2° | 120.0° |
| OP1 | P | OP2 | HOP2 | 179.9° | 180.0° |
| OP1 | P | O5' | C5' | 49.9° | 60.0° |
| OP2 | P | O5' | C5' | 178.5° | 60.1° |
| O5' | P | OP2 | HOP2 | 53.9° | 59.9° |
| P | O5' | C5' | C4' | 176.3° | 180.0° |
| P | O5' | C5' | H5' | 58.4° | 60.0° |
| P | O5' | C5' | H5'' | 51.0° | 60.0° |
| O5' | C5' | C4' | H5' | 125.2° | 120.0° |
| O5' | C5' | C4' | H5'' | 125.3° | 120.0° |
| O5' | C5' | H5' | H5'' | 118.4° | 120.0° |
| O5' | C5' | C4' | O4' | 74.5° | 61.4° |
| O5' | C5' | C4' | C3' | 44.0° | 176.9° |
| O5' | C5' | C4' | H4' | 160.8° | 60.8° |
| C4' | C5' | H5' | H5'' | 118.5° | 119.9° |
| C5' | C4' | O4' | C3' | 127.5° | 119.1° |
| C5' | C4' | O4' | H4' | 115.0° | 122.2° |
| C5' | C4' | C3' | H4' | 114.6° | 122.3° |
| C5' | C4' | O4' | C1' | 150.7° | 159.5° |
| C5' | C4' | C3' | O3' | 75.5° | 98.3° |
| C5' | C4' | C3' | C2' | 162.4° | 142.9° |
| C5' | C4' | C3' | H3' | 41.5° | 24.2° |
| H5' | C5' | C4' | O4' | 160.3° | 178.6° |
| H5' | C5' | C4' | C3' | 81.3° | 63.1° |
| H5' | C5' | C4' | H4' | 35.6° | 59.2° |
| H5'' | C5' | C4' | O4' | 50.8° | 58.6° |
| H5'' | C5' | C4' | C3' | 169.2° | 56.9° |
| H5'' | C5' | C4' | H4' | 73.9° | 179.2° |
| O4' | C4' | C3' | H4' | 124.9° | 118.8° |
| O4' | C4' | C3' | O3' | 163.9° | 142.8° |
| O4' | C4' | C3' | C2' | 41.9° | 24.0° |
| O4' | C4' | C3' | H3' | 79.0° | 94.7° |
| C4' | O4' | C1' | C2' | 5.0° | 40.4° |
| C4' | O4' | C1' | N1 | 117.1° | 159.3° |
| C4' | O4' | C1' | H1' | 124.2° | 78.5° |
| C3' | C4' | O4' | C1' | 23.1° | 40.5° |
| C4' | C3' | O3' | C2' | 110.8° | 114.7° |
| C4' | C3' | O3' | H3' | 127.0° | 122.5° |
| C4' | C3' | C2' | H3' | 126.5° | 118.6° |
| C4' | C3' | O3' | HO3' | 180.0° | 180.0° |
| C4' | C3' | C2' | O2' | 71.3° | 118.9° |
| C4' | C3' | C2' | C1' | 43.8° | 0.1° |
| C4' | C3' | C2' | H2' | 168.5° | 118.6° |
| H4' | C4' | O4' | C1' | 94.4° | 78.3° |
| H4' | C4' | C3' | O3' | 39.0° | 24.0° |
| H4' | C4' | C3' | C2' | 83.0° | 94.7° |
| H4' | C4' | C3' | H3' | 156.0° | 146.6° |
| O4' | C1' | C2' | C3' | 31.7° | 23.9° |
| O4' | C1' | C2' | O2' | 85.9° | 142.6° |
| O4' | C1' | C2' | N1 | 120.0° | 118.9° |
| O4' | C1' | C2' | H1' | 121.2° | 118.9° |
| O4' | C1' | C2' | H2' | 154.2° | 94.7° |
| O4' | C1' | N1 | H1' | 121.2° | 122.3° |
| O4' | C1' | N1 | C2 | 155.9° | 57.0° |
| O4' | C1' | N1 | C6 | 26.0° | 123.0° |
| O3' | C3' | C2' | H3' | 117.6° | 122.7° |
| O3' | C3' | C2' | O2' | 44.6° | 0.2° |
| O3' | C3' | C2' | C1' | 159.7° | 118.8° |
| O3' | C3' | C2' | H2' | 75.6° | 122.7° |
| C2' | C3' | O3' | HO3' | 69.2° | 65.3° |
| C3' | C2' | O2' | C1' | 111.1° | 114.7° |
| C3' | C2' | O2' | H2' | 123.5° | 122.6° |
| C3' | C2' | C1' | H2' | 122.5° | 118.6° |
| C3' | C2' | O2' | HO2' | 180.0° | 61.4° |
| C3' | C2' | C1' | N1 | 88.3° | 142.8° |
| C3' | C2' | C1' | H1' | 153.0° | 95.0° |
| H3' | C3' | O3' | HO3' | 52.9° | 57.4° |
| H3' | C3' | C2' | O2' | 162.2° | 122.5° |
| H3' | C3' | C2' | C1' | 82.7° | 118.5° |
| H3' | C3' | C2' | H2' | 42.1° | 0.0° |
| O2' | C2' | C1' | H2' | 119.8° | 122.7° |
| O2' | C2' | C1' | N1 | 154.0° | 98.5° |
| O2' | C2' | C1' | H1' | 35.3° | 23.7° |
| C1' | C2' | O2' | HO2' | 68.8° | 176.1° |
| C2' | C1' | N1 | H1' | 119.2° | 122.2° |
| C2' | C1' | N1 | C2 | 84.4° | 58.5° |
| C2' | C1' | N1 | C6 | 93.6° | 121.5° |
| H2' | C2' | O2' | HO2' | 56.5° | 61.2° |
| H2' | C2' | C1' | N1 | 34.2° | 24.2° |
| H2' | C2' | C1' | H1' | 84.5° | 146.4° |
| C1' | N1 | C2 | C6 | 178.0° | 180.0° |
| C1' | N1 | C2 | O2 | 0.7° | 0.0° |
| C1' | N1 | C2 | N3 | 178.9° | 180.0° |
| C1' | N1 | C6 | C5 | 179.8° | 179.7° |
| C1' | N1 | C6 | H6 | 0.1° | 0.1° |
| H1' | C1' | N1 | C2 | 34.8° | 179.3° |
| H1' | C1' | N1 | C6 | 147.2° | 0.7° |
| N1 | C2 | O2 | N3 | 179.6° | 180.0° |
| N1 | C2 | N3 | C4 | 0.3° | 0.0° |
| C2 | N1 | C6 | C5 | 2.2° | 0.4° |
| C2 | N1 | C6 | H6 | 177.9° | 179.9° |
| C6 | N1 | C2 | O2 | 178.7° | 179.9° |
| C6 | N1 | C2 | N3 | 0.9° | 0.1° |
| N1 | C6 | C5 | C4 | 2.1° | 0.6° |
| N1 | C6 | C5 | H6 | 180.0° | 179.6° |
| N1 | C6 | C5 | H5 | 177.8° | 180.0° |
| O2 | C2 | N3 | C4 | 179.9° | 180.0° |
| C2 | N3 | C4 | N4 | 179.2° | 180.0° |
| C2 | N3 | C4 | C5 | 0.3° | 0.2° |
| N3 | C4 | N4 | C5 | 179.5° | 179.8° |
| N3 | C4 | N4 | H41 | 0.5° | 0.0° |
| N3 | C4 | N4 | H42 | 125.7° | 179.7° |
| N3 | C4 | C5 | C6 | 1.0° | 0.5° |
| N3 | C4 | C5 | H5 | 179.0° | 180.0° |
| C4 | N4 | H41 | H42 | 125.3° | 179.7° |
| N4 | C4 | C5 | C6 | 179.5° | 179.7° |
| N4 | C4 | C5 | H5 | 0.6° | 0.3° |
| C5 | C4 | N4 | H41 | 180.0° | 179.7° |
| C5 | C4 | N4 | H42 | 54.7° | 0.5° |
| C4 | C5 | C6 | H5 | 179.9° | 179.4° |
| C4 | C5 | C6 | H6 | 177.9° | 179.8° |
| H5 | C5 | C6 | H6 | 2.1° | 0.4° |
