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Summary Geometry Related PDB entries

BZE

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C6	C10	doub	1.38Å	1.39Å	Aromatic
C6	C2	sing	1.39Å	1.40Å	Aromatic
C10	C14	sing	1.38Å	1.40Å	Aromatic
N13	C8	sing	1.38Å	1.35Å
C8	N4	doub	1.33Å	1.35Å	Aromatic
C8	N11	sing	1.33Å	1.34Å	Aromatic
N4	C1	sing	1.33Å	1.35Å	Aromatic
N11	C7	doub	1.33Å	1.34Å	Aromatic
C1	C2	sing	1.48Å	1.48Å
C1	N3	doub	1.33Å	1.36Å	Aromatic
C2	C5	doub	1.39Å	1.39Å	Aromatic
C14	C9	doub	1.38Å	1.39Å	Aromatic
C7	N3	sing	1.33Å	1.35Å	Aromatic
C7	N12	sing	1.38Å	1.34Å
C5	C9	sing	1.38Å	1.40Å	Aromatic
N13	H1	sing	0.97Å	1.00Å
N13	H2	sing	0.97Å	1.00Å
N12	H3	sing	0.97Å	1.00Å
N12	H4	sing	0.97Å	1.00Å
C6	H5	sing	1.08Å	1.08Å
C10	H6	sing	1.08Å	1.08Å
C14	H7	sing	1.08Å	1.08Å
C9	H8	sing	1.08Å	1.08Å
C5	H9	sing	1.08Å	1.08Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C10	C6	C2	119.1°	119.8°
C6	C10	C14	120.6°	120.2°
C10	C6	H5	120.4°	120.1°
C6	C10	H6	119.7°	119.9°
C6	C2	C1	121.4°	120.1°
C6	C2	C5	120.5°	119.8°
C2	C6	H5	120.5°	120.1°
C10	C14	C9	120.0°	120.2°
C14	C10	H6	119.7°	119.9°
C10	C14	H7	120.0°	119.9°
N13	C8	N4	122.0°	120.0°
N13	C8	N11	118.7°	120.0°
C8	N13	H1	109.5°	120.0°
C8	N13	H2	109.5°	120.0°
N4	C8	N11	119.3°	120.0°
C8	N4	C1	120.0°	120.0°
C8	N11	C7	121.4°	120.0°
N4	C1	C2	116.0°	120.0°
N4	C1	N3	120.7°	120.0°
N11	C7	N3	119.8°	120.0°
N11	C7	N12	118.1°	120.0°
C2	C1	N3	123.3°	120.0°
C1	C2	C5	118.1°	120.1°
C1	N3	C7	118.7°	120.0°
C2	C5	C9	120.2°	119.8°
C2	C5	H9	119.9°	120.1°
C14	C9	C5	119.6°	120.2°
C9	C14	H7	120.0°	119.9°
C14	C9	H8	120.2°	119.9°
N3	C7	N12	122.1°	120.0°
C7	N12	H3	109.5°	120.0°
C7	N12	H4	109.4°	120.0°
C5	C9	H8	120.2°	119.9°
C9	C5	H9	119.9°	120.1°
H1	N13	H2	109.5°	120.0°
H3	N12	H4	109.5°	120.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C10	C6	C2	H5	180.0°	179.9°
C6	C10	C14	H6	180.0°	180.0°
C10	C6	C2	C1	178.8°	179.9°
C10	C6	C2	C5	0.0°	0.3°
C6	C10	C14	C9	0.1°	0.0°
C6	C10	C14	H7	179.9°	180.0°
C2	C6	C10	C14	0.1°	0.0°
C6	C2	C1	N4	121.5°	0.2°
C6	C2	C1	C5	178.8°	179.8°
C6	C2	C1	N3	58.9°	179.8°
C6	C2	C5	C9	0.1°	0.5°
C2	C6	C10	H6	180.0°	180.0°
C6	C2	C5	H9	179.9°	179.7°
C10	C14	C9	H7	180.0°	180.0°
C10	C14	C9	C5	0.2°	0.3°
C14	C10	C6	H5	180.0°	179.9°
C10	C14	C9	H8	179.8°	179.9°
N13	C8	N4	N11	179.5°	179.8°
N13	C8	N4	C1	179.7°	179.8°
N13	C8	N11	C7	179.6°	180.0°
C8	N13	H1	H2	120.0°	179.7°
N4	C8	N11	C7	0.1°	0.2°
C8	N4	C1	C2	179.8°	180.0°
C8	N4	C1	N3	0.7°	0.4°
N4	C8	N13	H1	0.0°	0.0°
N4	C8	N13	H2	120.0°	179.8°
N11	C8	N4	C1	0.2°	0.4°
C8	N11	C7	N3	0.5°	0.0°
C8	N11	C7	N12	179.4°	180.0°
N11	C8	N13	H1	179.5°	179.8°
N11	C8	N13	H2	59.5°	0.0°
N4	C1	C2	N3	179.6°	179.6°
N4	C1	C2	C5	57.2°	180.0°
N4	C1	N3	C7	1.0°	0.2°
N11	C7	N3	C1	0.9°	0.0°
N11	C7	N3	N12	178.9°	180.0°
N11	C7	N12	H3	0.0°	0.0°
N11	C7	N12	H4	120.0°	180.0°
C2	C1	N3	C7	179.4°	179.8°
C1	C2	C5	C9	178.6°	179.7°
C1	C2	C6	H5	1.3°	0.1°
C1	C2	C5	H9	1.4°	0.0°
N3	C1	C2	C5	122.4°	0.4°
C1	N3	C7	N12	179.8°	180.0°
C2	C5	C9	C14	0.3°	0.5°
C2	C5	C9	H9	180.0°	179.7°
C5	C2	C6	H5	180.0°	179.8°
C2	C5	C9	H8	179.7°	179.7°
C14	C9	C5	H8	180.0°	179.8°
C9	C14	C10	H6	179.9°	180.0°
C14	C9	C5	H9	179.7°	179.7°
N3	C7	N12	H3	178.9°	180.0°
N3	C7	N12	H4	58.8°	0.0°
C7	N12	H3	H4	120.0°	180.0°
C5	C9	C14	H7	179.7°	179.7°
H5	C6	C10	H6	0.0°	0.1°
H6	C10	C14	H7	0.1°	0.0°
H7	C14	C9	H8	0.3°	0.0°
H8	C9	C5	H9	0.3°	0.0°

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PDB entries from 2026-02-18

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